Wall clock time and date at job start Tue Mar 31 2020 01:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00418 * 2 1 4 4 H 1.48495 * 109.47362 * 240.00530 * 3 2 1 5 5 H 1.48509 * 109.46781 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47347 * 119.99944 * 3 2 1 7 7 C 1.37879 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00334 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99724 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46890 * 180.02562 * 9 7 2 11 11 O 1.45195 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.34761 * 117.00008 * 179.97438 * 11 10 9 13 13 O 1.21512 * 120.00167 * 0.02562 * 12 11 10 14 14 C 1.47385 * 119.99713 * 179.97438 * 12 11 10 15 15 C 1.39852 * 120.07734 * 359.72242 * 14 12 11 16 16 C 1.36581 * 120.04931 * 179.71266 * 15 14 12 17 17 C 1.39237 * 120.20488 * 0.56774 * 16 15 14 18 18 N 1.39007 * 119.92735 * 179.73656 * 17 16 15 19 19 C 1.39234 * 120.14528 * 359.71270 * 17 16 15 20 20 N 1.48022 * 120.02919 * 179.97438 * 19 17 16 21 21 O 1.21798 * 120.00033 * 217.79812 * 20 19 17 22 22 O 1.21802 * 119.99863 * 37.79236 * 20 19 17 23 23 C 1.37649 * 119.94835 * 359.97438 * 19 17 16 24 24 H 0.97004 * 119.99447 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47147 * 60.00403 * 9 7 2 26 26 H 1.09000 * 109.47363 * 300.00322 * 9 7 2 27 27 H 1.09000 * 109.47076 * 300.00125 * 10 9 7 28 28 H 1.08999 * 109.47201 * 60.00063 * 10 9 7 29 29 H 1.07996 * 119.97517 * 359.97438 * 15 14 12 30 30 H 1.07998 * 119.89744 * 180.25575 * 16 15 14 31 31 H 0.97005 * 119.99580 * 188.58255 * 18 17 16 32 32 H 0.96996 * 120.00422 * 8.57833 * 18 17 16 33 33 H 1.08001 * 120.10056 * 180.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5192 -4.9195 -0.0011 12 6 2.2532 -6.0497 -0.0018 13 8 3.4666 -5.9862 -0.0013 14 6 1.5840 -7.3629 -0.0018 15 6 0.1875 -7.4379 0.0046 16 6 -0.4321 -8.6551 -0.0014 17 6 0.3225 -9.8252 -0.0020 18 7 -0.3141 -11.0609 -0.0026 19 6 1.7134 -9.7603 -0.0025 20 7 2.5131 -11.0059 -0.0026 21 8 3.5437 -11.0679 0.6435 22 8 2.1404 -11.9688 -0.6487 23 6 2.3442 -8.5369 -0.0030 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8719 -3.6043 -0.8905 28 1 2.8719 -3.6044 0.8894 29 1 -0.4015 -6.5327 0.0100 30 1 -1.5107 -8.7101 -0.0006 31 1 0.2023 -11.8726 0.1224 32 1 -1.2746 -11.1117 -0.1279 33 1 3.4229 -8.4836 -0.0038 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021712356.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:42 Heat of formation + Delta-G solvation = -72.145659 kcal Electronic energy + Delta-G solvation = -20549.046632 eV Core-core repulsion = 16963.896242 eV Total energy + Delta-G solvation = -3585.150391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.50030 -40.50452 -39.32005 -36.90110 -36.25452 -35.26167 -33.41303 -32.40252 -30.60979 -29.81140 -26.74090 -25.34049 -23.94125 -23.08512 -21.47127 -20.81817 -19.36566 -18.96121 -18.33458 -17.83513 -17.30468 -16.77777 -16.40576 -16.05315 -16.02544 -14.83573 -14.66460 -14.57008 -14.18303 -13.60293 -13.32535 -12.94740 -12.40014 -12.21240 -11.84853 -11.54797 -11.38929 -11.33585 -11.22139 -11.12578 -10.79846 -10.78475 -10.43144 -10.04780 -9.73543 -9.71231 -9.37792 -8.53931 -8.48673 -6.15603 -4.20066 -0.19917 0.35541 0.90825 1.11840 2.36333 2.85954 2.98583 3.27296 3.28312 3.31440 3.34989 3.87685 4.32413 4.39308 4.51293 4.57441 4.74567 5.11018 5.21357 5.22489 5.58096 5.74222 5.83077 6.01007 6.01832 6.10265 6.43324 6.55546 6.81709 6.82814 7.37303 7.47924 7.54759 7.79981 8.03964 8.18031 8.85128 9.44726 10.95830 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.041244 B = 0.002956 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.721049 B = 9470.943924 C =10086.689899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.352 6.352 12 C 0.507 3.493 13 O -0.512 6.512 14 C -0.169 4.169 15 C 0.031 3.969 16 C -0.206 4.206 17 C 0.306 3.694 18 N -0.844 5.844 19 C -0.135 4.135 20 N 0.040 4.960 21 O -0.146 6.146 22 O -0.180 6.180 23 C 0.047 3.953 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.162 0.838 30 H 0.153 0.847 31 H 0.411 0.589 32 H 0.413 0.587 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 -21.090 0.109 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.268 6.268 12 C 0.352 3.648 13 O -0.403 6.403 14 C -0.173 4.173 15 C 0.011 3.989 16 C -0.229 4.229 17 C 0.192 3.808 18 N -0.383 5.383 19 C -0.224 4.224 20 N 0.558 4.442 21 O -0.367 6.367 22 O -0.388 6.388 23 C 0.027 3.973 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.180 0.820 30 H 0.171 0.829 31 H 0.244 0.756 32 H 0.244 0.756 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.203 -20.361 0.075 20.790 hybrid contribution 0.604 0.301 -0.010 0.675 sum -3.599 -20.060 0.065 20.380 Atomic orbital electron populations 1.69956 1.06101 1.27166 1.49648 1.24973 0.94925 0.99399 0.94771 0.86523 0.79494 0.82401 0.78841 1.20032 1.21110 1.20030 1.20936 0.93197 0.90068 1.52432 0.92245 1.19176 0.94171 0.88932 0.98901 1.23730 0.96476 0.78153 1.01265 1.86546 1.41916 1.15556 1.82748 1.20595 0.85577 0.85175 0.73469 1.90839 1.14876 1.88259 1.46296 1.18850 0.93546 0.90553 1.14363 1.21468 0.93315 0.98955 0.85120 1.20465 1.00745 0.89497 1.12153 1.17604 0.88143 0.88207 0.86840 1.42880 1.12180 1.05506 1.77732 1.20200 0.89350 0.84922 1.27890 1.43388 1.00691 1.02072 0.98082 1.94587 1.12777 1.89208 1.40113 1.94463 1.74544 1.28534 1.41298 1.20750 1.02093 0.87890 0.86548 0.92617 0.95295 0.95292 0.92059 0.92015 0.82035 0.82901 0.75557 0.75648 0.82155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.08 1.61 5.41 37.16 0.20 1.81 16 11 O -0.35 -6.48 9.46 -40.66 -0.38 -6.87 16 12 C 0.51 8.50 7.89 34.45 0.27 8.77 16 13 O -0.51 -9.88 16.13 -19.27 -0.31 -10.19 16 14 C -0.17 -2.14 5.88 -104.96 -0.62 -2.76 16 15 C 0.03 0.30 9.56 -39.58 -0.38 -0.08 16 16 C -0.21 -1.51 9.82 -39.81 -0.39 -1.90 16 17 C 0.31 2.59 6.71 -83.87 -0.56 2.03 16 18 N -0.84 -4.88 8.78 32.41 0.28 -4.59 16 19 C -0.13 -1.50 6.50 -79.79 -0.52 -2.02 16 20 N 0.04 0.49 4.27 34.04 0.15 0.63 16 21 O -0.15 -2.00 18.95 -29.46 -0.56 -2.55 16 22 O -0.18 -2.16 16.80 -29.46 -0.50 -2.65 16 23 C 0.05 0.57 9.21 -39.19 -0.36 0.21 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.16 1.45 7.60 -52.49 -0.40 1.05 16 30 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.41 2.62 6.51 -40.82 -0.27 2.36 16 32 H 0.41 1.10 8.84 -40.82 -0.36 0.74 16 33 H 0.16 2.01 7.60 -52.49 -0.40 1.61 16 LS Contribution 306.66 15.07 4.62 4.62 Total: -1.00 -31.85 306.66 -6.98 -38.83 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -3.08 Total: -1.61 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.92 Total: -6.62 kcal Atomic # 7 Polarization: -30.10 SS G_CDS: 1.17 Total: -28.94 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.75 Total: -22.27 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.85 -6.98 -38.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021712356.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.317 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds