Wall clock time and date at job start Tue Mar 31 2020 01:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48496 * 109.47443 * 59.99520 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 O 1.42903 * 109.46878 * 179.97438 * 13 11 10 15 15 C 1.35904 * 116.99628 * 179.97438 * 14 13 11 16 16 C 1.38750 * 120.05931 * 359.72554 * 15 14 13 17 17 C 1.38118 * 119.95074 * 179.78891 * 16 15 14 18 18 C 1.38299 * 120.04796 * 0.48601 * 17 16 15 19 19 C 1.38235 * 120.11352 * 359.74707 * 18 17 16 20 20 N 1.48005 * 119.97171 * 180.02562 * 19 18 17 21 21 O 1.21803 * 119.99801 * 180.02562 * 20 19 18 22 22 O 1.21803 * 120.00183 * 0.02562 * 20 19 18 23 23 C 1.38175 * 120.05747 * 0.02562 * 19 18 17 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 26 26 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 27 27 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 28 28 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 29 29 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 30 30 H 1.08009 * 120.02793 * 0.02562 * 16 15 14 31 31 H 1.07999 * 119.97895 * 180.23097 * 17 16 15 32 32 H 1.08003 * 119.94271 * 179.76787 * 18 17 16 33 33 H 1.07990 * 120.02869 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 8 2.0187 -7.2663 0.0032 15 6 2.7589 -8.4060 0.0042 16 6 4.1446 -8.3348 -0.0004 17 6 4.8947 -9.4945 0.0050 18 6 4.2656 -10.7262 0.0050 19 6 2.8853 -10.7999 0.0047 20 7 2.2153 -12.1196 0.0053 21 8 0.9990 -12.1851 0.0046 22 8 2.8802 -13.1402 0.0064 23 6 2.1304 -9.6426 0.0040 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 3.1568 -3.4354 0.0021 28 1 3.3612 -5.9713 -0.8858 29 1 3.3585 -5.9707 0.8942 30 1 4.6363 -7.3732 -0.0045 31 1 5.9733 -9.4396 0.0052 32 1 4.8539 -11.6319 0.0055 33 1 1.0520 -9.7007 0.0043 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025393937.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:53 Heat of formation + Delta-G solvation = -73.873248 kcal Electronic energy + Delta-G solvation = -20189.692255 eV Core-core repulsion = 16604.466950 eV Total energy + Delta-G solvation = -3585.225305 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.33228 -41.63263 -40.38981 -38.59271 -37.74839 -36.21174 -34.43028 -33.01724 -32.01348 -30.38168 -28.45376 -27.61671 -24.75879 -24.05655 -23.26783 -21.65334 -20.68011 -19.86554 -19.22302 -18.69233 -18.32844 -17.78910 -17.52853 -17.39690 -16.88530 -16.69386 -15.91867 -15.85169 -15.13445 -14.75514 -14.29272 -14.29036 -14.00641 -13.73772 -13.28071 -12.92326 -12.86614 -12.77533 -12.65128 -12.36974 -12.35345 -12.26972 -12.20635 -11.47184 -10.91011 -10.84079 -10.67769 -9.94407 -9.69799 -8.30327 -6.47130 -1.33173 -0.03993 0.23412 0.24112 1.43300 1.45269 1.51290 1.57377 1.59291 2.24269 2.35782 2.69839 3.05600 3.38132 3.55030 3.64588 3.70049 3.87766 3.94597 4.03861 4.08676 4.37826 4.67230 4.88212 4.96064 5.02969 5.08239 5.20356 5.31745 5.41925 5.62041 5.81591 6.01381 6.40503 6.63413 6.79269 7.21495 7.39134 8.82103 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.048973 B = 0.002598 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.603473 B =10772.925647 C =11324.082391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.985 3.015 4 H -0.248 1.248 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.552 4.552 8 H 0.091 0.909 9 C 0.264 3.736 10 N -0.696 5.696 11 C 0.492 3.508 12 O -0.594 6.594 13 C 0.049 3.951 14 O -0.316 6.316 15 C 0.125 3.875 16 C -0.142 4.142 17 C -0.056 4.056 18 C -0.088 4.088 19 C -0.023 4.023 20 N 0.029 4.971 21 O -0.211 6.211 22 O -0.142 6.142 23 C -0.116 4.116 24 H 0.268 0.732 25 H -0.011 1.011 26 H -0.011 1.011 27 H 0.416 0.584 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.188 0.812 31 H 0.201 0.799 32 H 0.175 0.825 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.644 -16.969 0.007 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.171 1.171 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.590 4.590 8 H 0.109 0.891 9 C 0.142 3.858 10 N -0.347 5.347 11 C 0.279 3.721 12 O -0.475 6.475 13 C -0.028 4.028 14 O -0.229 6.229 15 C 0.078 3.922 16 C -0.160 4.160 17 C -0.074 4.074 18 C -0.107 4.107 19 C -0.106 4.106 20 N 0.545 4.455 21 O -0.415 6.415 22 O -0.365 6.365 23 C -0.136 4.136 24 H 0.077 0.923 25 H 0.007 0.993 26 H 0.006 0.994 27 H 0.253 0.747 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.205 0.795 31 H 0.218 0.782 32 H 0.193 0.807 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 17.664 -16.306 0.007 24.039 hybrid contribution -0.644 0.593 0.000 0.876 sum 17.019 -15.712 0.007 23.163 Atomic orbital electron populations 1.70146 1.08407 1.28546 1.50068 1.26091 0.95731 1.04053 0.93945 0.85100 0.79304 0.77270 0.77470 1.17122 1.20764 1.20775 1.21646 0.94543 0.90158 1.52650 0.89109 1.18607 0.88722 0.84160 0.94334 1.45973 1.11703 1.04573 1.72484 1.20963 0.89481 0.85038 0.76664 1.90719 1.19722 1.85409 1.51640 1.22794 0.92964 0.79114 1.07910 1.86186 1.35752 1.12599 1.88349 1.18768 0.91186 0.85112 0.97102 1.22293 0.90734 1.03465 0.99554 1.21560 1.03054 0.88335 0.94451 1.21438 0.89742 1.02560 0.96970 1.20843 0.93996 0.80872 1.14880 1.43903 1.01025 1.03667 0.96938 1.94591 0.96637 1.94312 1.55994 1.94477 1.65037 1.25212 1.51804 1.20037 1.02026 0.89038 1.02485 0.92293 0.99343 0.99350 0.74738 0.84316 0.84330 0.79464 0.78242 0.80750 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.99 40.29 29.54 68.60 2.03 42.32 16 4 H -0.25 -9.12 7.11 99.48 0.71 -8.42 16 5 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.55 -28.09 9.28 25.60 0.24 -27.86 16 8 H 0.09 4.04 7.60 -2.91 -0.02 4.02 16 9 C 0.26 13.68 5.43 85.63 0.46 14.15 16 10 N -0.70 -25.66 5.55 -466.78 -2.59 -28.25 16 11 C 0.49 17.67 7.91 87.66 0.69 18.37 16 12 O -0.59 -29.22 16.50 16.01 0.26 -28.95 16 13 C 0.05 0.98 5.22 71.24 0.37 1.35 16 14 O -0.32 -8.25 9.67 -73.43 -0.71 -8.96 16 15 C 0.12 2.40 6.69 22.50 0.15 2.55 16 16 C -0.14 -1.27 9.04 22.36 0.20 -1.07 16 17 C -0.06 -0.31 10.04 22.26 0.22 -0.09 16 18 C -0.09 -1.01 9.55 22.28 0.21 -0.80 16 19 C -0.02 -0.46 6.85 36.36 0.25 -0.22 16 20 N 0.03 0.74 4.45 -46.51 -0.21 0.54 16 21 O -0.21 -6.37 18.45 18.88 0.35 -6.02 16 22 O -0.14 -3.47 18.44 18.88 0.35 -3.12 16 23 C -0.12 -2.63 9.49 22.37 0.21 -2.42 16 24 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 26 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 27 H 0.42 11.26 8.32 -92.71 -0.77 10.48 16 28 H 0.14 1.54 7.65 -2.39 -0.02 1.52 16 29 H 0.14 1.54 7.68 -2.39 -0.02 1.52 16 30 H 0.19 0.26 6.30 -2.91 -0.02 0.25 16 31 H 0.20 -0.67 8.06 -2.91 -0.02 -0.69 16 32 H 0.18 1.29 7.61 -2.91 -0.02 1.27 16 33 H 0.14 3.67 7.61 -2.92 -0.02 3.64 16 Total: -1.00 -81.56 307.56 3.64 -77.92 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 0.40 Total: 4.65 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 3.48 Total: 4.50 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.51 Total: -82.33 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: 0.25 Total: -47.05 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -81.56 3.64 -77.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025393937.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.048 kcal (2) G-P(sol) polarization free energy of solvation -81.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds