Wall clock time and date at job start Tue Mar 31 2020 01:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47694 * 2 1 4 4 C 1.38956 * 120.00458 * 179.97438 * 3 2 1 5 5 C 1.39295 * 119.91747 * 6.07557 * 4 3 2 6 6 C 1.36597 * 120.07662 * 180.25083 * 5 4 3 7 7 C 1.39945 * 119.91667 * 359.50597 * 6 5 4 8 8 C 1.47277 * 120.07485 * 180.23014 * 7 6 5 9 9 O 1.21480 * 119.99434 * 179.97438 * 8 7 6 10 10 O 1.35078 * 120.00084 * 359.97438 * 8 7 6 11 11 C 1.22511 * 117.00144 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00106 * 0.02562 * 11 10 8 13 13 C 1.46579 * 120.00240 * 179.97438 * 11 10 8 14 14 N 1.29381 * 120.00235 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00003 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47279 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46801 * 120.00554 * 15 13 11 18 18 H 1.48494 * 109.47231 * 240.00143 * 15 13 11 19 19 C 1.39908 * 119.84691 * 0.24322 * 7 6 5 20 20 C 1.36624 * 119.91719 * 0.02562 * 19 7 6 21 21 N 1.48023 * 119.95797 * 179.97438 * 20 19 7 22 22 O 1.31705 * 119.99704 * 353.71018 * 21 20 19 23 23 O 1.31695 * 119.99848 * 173.71413 * 21 20 19 24 24 H 1.08997 * 109.47573 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46854 * 300.00267 * 1 2 3 26 26 H 1.09005 * 109.46539 * 59.99983 * 1 2 3 27 27 H 1.09001 * 109.47112 * 239.99390 * 2 1 3 28 28 H 1.09002 * 109.46982 * 120.00624 * 2 1 3 29 29 H 0.97006 * 119.99391 * 0.02562 * 3 2 1 30 30 H 1.07998 * 119.96496 * 0.03207 * 5 4 3 31 31 H 1.07994 * 120.03837 * 179.77415 * 6 5 4 32 32 H 0.96999 * 120.00695 * 179.97438 * 14 13 11 33 33 H 1.07996 * 120.03904 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 3.3846 1.6350 0.0005 5 6 4.2871 0.5816 -0.1267 6 6 5.6308 0.8269 -0.1214 7 6 6.1002 2.1396 0.0016 8 6 7.5482 2.4086 0.0026 9 8 7.9540 3.5486 0.1090 10 8 8.4249 1.3877 -0.1148 11 6 9.6161 1.6738 -0.1070 12 1 9.9233 2.7045 -0.0089 13 6 10.6245 0.6171 -0.2298 14 7 10.2566 -0.6178 -0.3468 15 14 12.4408 1.0535 -0.2186 16 1 12.5959 2.5234 -0.0749 17 1 13.1066 0.3721 0.9206 18 1 13.0638 0.6118 -1.4921 19 6 5.1908 3.1957 0.1240 20 6 3.8482 2.9423 0.1234 21 7 2.8852 4.0589 0.2534 22 8 3.3199 5.2788 0.4934 23 8 1.5938 3.8325 0.1291 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.3881 2.1185 0.0004 30 1 3.9241 -0.4307 -0.2261 31 1 6.3300 0.0094 -0.2165 32 1 10.9239 -1.3171 -0.4284 33 1 5.5496 4.2099 0.2187 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028136532.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:32 Heat of formation + Delta-G solvation = 3.859888 kcal Electronic energy + Delta-G solvation = -21131.525578 eV Core-core repulsion = 17549.671035 eV Total energy + Delta-G solvation = -3581.854543 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.62642 -39.93179 -38.09399 -36.72785 -35.39133 -34.22775 -32.75092 -32.11742 -31.42807 -28.90911 -26.58243 -25.46105 -24.02472 -22.91797 -21.61270 -20.59549 -18.62337 -18.34054 -17.95608 -17.44386 -16.46925 -16.01300 -15.91896 -15.31231 -14.99635 -14.95705 -14.68933 -14.24396 -14.07864 -13.41402 -13.22831 -12.65768 -12.37367 -12.22180 -12.10931 -11.99611 -11.52353 -11.47714 -11.09283 -10.90878 -10.75040 -10.63888 -10.58561 -10.16030 -9.80551 -9.51395 -9.02504 -9.01254 -7.80750 -6.94524 -3.89799 -0.41977 1.00767 1.31944 1.39710 2.84055 3.01370 3.02721 3.07891 3.18021 3.73698 4.01902 4.24651 4.39302 4.63415 4.74293 4.83433 4.91041 5.02747 5.11207 5.22039 5.32601 5.50278 5.55293 5.65447 5.72695 5.83434 6.06560 6.40686 6.45189 6.64951 6.83850 6.92411 7.07192 7.48193 7.71718 8.51042 8.83237 9.91746 10.30942 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025493 B = 0.004131 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.065625 B = 6775.769829 C = 7850.771450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.712 5.712 4 C 0.284 3.716 5 C -0.210 4.210 6 C 0.019 3.981 7 C -0.113 4.113 8 C 0.356 3.644 9 O -0.570 6.570 10 O -0.142 6.142 11 C -0.375 4.375 12 H 0.097 0.903 13 C 0.043 3.957 14 N -0.809 5.809 15 Si 0.946 3.054 16 H -0.257 1.257 17 H -0.272 1.272 18 H -0.272 1.272 19 C 0.017 3.983 20 C -0.081 4.081 21 N 0.018 4.982 22 O -0.178 6.178 23 O -0.244 6.244 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.419 0.581 30 H 0.147 0.853 31 H 0.158 0.842 32 H 0.285 0.715 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.029 -5.035 -0.146 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.020 4.020 3 N -0.356 5.356 4 C 0.169 3.831 5 C -0.233 4.233 6 C -0.001 4.001 7 C -0.118 4.118 8 C 0.211 3.789 9 O -0.474 6.474 10 O -0.044 6.044 11 C -0.454 4.454 12 H 0.114 0.886 13 C -0.172 4.172 14 N -0.441 5.441 15 Si 0.769 3.231 16 H -0.180 1.180 17 H -0.197 1.197 18 H -0.197 1.197 19 C -0.003 4.003 20 C -0.177 4.177 21 N 0.479 4.521 22 O -0.370 6.370 23 O -0.411 6.411 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.271 0.729 30 H 0.165 0.835 31 H 0.176 0.824 32 H 0.097 0.903 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.765 -5.608 -0.209 13.944 hybrid contribution 0.360 0.686 0.038 0.776 sum -12.404 -4.922 -0.171 13.346 Atomic orbital electron populations 1.21965 0.93947 1.03207 1.03107 1.21562 0.95348 0.82974 1.02124 1.46287 1.03737 1.10436 1.75098 1.17746 0.85929 0.90393 0.88985 1.20461 0.92311 0.97892 1.12640 1.21597 0.95135 0.97180 0.86188 1.18875 0.91758 0.92282 1.08857 1.19980 0.85874 0.84118 0.88907 1.90604 1.78735 1.22035 1.56035 1.80458 1.17375 1.38089 1.68438 1.20845 0.80695 0.95656 1.48174 0.88589 1.26992 1.00758 0.93513 0.95916 1.68909 1.37403 1.00868 1.36906 0.85526 0.78762 0.80221 0.78578 1.18039 1.19689 1.19688 1.20534 0.88129 1.02126 0.89490 1.19345 0.88496 0.83088 1.26728 1.50242 1.02572 1.03757 0.95499 1.96288 1.83657 1.03371 1.53667 1.95799 0.94674 1.89419 1.61210 0.90526 0.91723 0.91695 0.91176 0.91243 0.72908 0.83536 0.82442 0.90270 0.81995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 59. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 10.03 37.16 0.37 -0.69 16 2 C 0.10 0.84 5.66 -4.04 -0.02 0.82 16 3 N -0.71 -8.43 5.60 -58.63 -0.33 -8.75 16 4 C 0.28 4.02 6.64 -83.86 -0.56 3.47 16 5 C -0.21 -2.72 9.25 -39.78 -0.37 -3.09 16 6 C 0.02 0.30 9.57 -39.53 -0.38 -0.07 16 7 C -0.11 -2.21 5.88 -104.96 -0.62 -2.83 16 8 C 0.36 8.79 7.75 34.40 0.27 9.06 16 9 O -0.57 -15.68 15.46 -19.23 -0.30 -15.98 16 10 O -0.14 -3.77 8.53 -1.88 -0.02 -3.78 16 11 C -0.37 -10.26 9.62 34.09 0.33 -9.94 16 12 H 0.10 2.74 6.70 -52.48 -0.35 2.39 16 13 C 0.04 1.07 5.69 -15.22 -0.09 0.98 16 14 N -0.81 -20.48 13.66 55.99 0.76 -19.71 16 15 Si 0.95 19.02 29.64 -169.99 -5.04 13.98 16 16 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 17 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 19 C 0.02 0.32 9.08 -39.54 -0.36 -0.04 16 20 C -0.08 -1.37 6.85 -80.15 -0.55 -1.92 16 21 N 0.02 0.33 4.98 33.86 0.17 0.50 16 22 O -0.18 -3.41 19.14 -31.57 -0.60 -4.01 16 23 O -0.24 -4.11 16.31 -31.56 -0.51 -4.63 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.50 7.70 -51.93 -0.40 0.10 16 28 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.42 5.31 4.67 -42.05 -0.20 5.11 16 30 H 0.15 1.41 6.69 -52.49 -0.35 1.05 16 31 H 0.16 2.49 7.60 -52.49 -0.40 2.09 16 32 H 0.29 6.45 8.26 -40.82 -0.34 6.11 16 33 H 0.16 3.14 7.14 -52.49 -0.38 2.77 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -30.76 301.96 -6.18 -36.94 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -2.90 Total: 5.14 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.97 Total: -4.24 kcal Atomic # 7 Polarization: -28.57 SS G_CDS: 0.60 Total: -27.97 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.43 Total: -28.40 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.04 Total: 13.98 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.76 -6.18 -36.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028136532.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.797 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds