Wall clock time and date at job start Tue Mar 31 2020 01:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00076 * 2 1 4 4 H 1.48505 * 109.46641 * 269.99822 * 3 2 1 5 5 H 1.48503 * 109.47106 * 29.99486 * 3 2 1 6 6 H 1.48497 * 109.47342 * 149.99835 * 3 2 1 7 7 C 1.37881 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99963 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99690 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46789 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.47286 * 180.02562 * 10 9 7 12 12 C 1.34766 * 117.00156 * 180.02562 * 11 10 9 13 13 O 1.21519 * 119.99959 * 0.02562 * 12 11 10 14 14 C 1.47291 * 119.99689 * 180.02562 * 12 11 10 15 15 C 1.39794 * 120.21391 * 5.88475 * 14 12 11 16 16 C 1.37727 * 119.91974 * 180.23169 * 15 14 12 17 17 C 1.38638 * 120.35696 * 359.51974 * 16 15 14 18 18 N 1.48014 * 119.77808 * 180.25599 * 17 16 15 19 19 O 1.21801 * 120.00317 * 359.97438 * 18 17 16 20 20 O 1.21796 * 120.00024 * 179.97438 * 18 17 16 21 21 C 1.37944 * 120.43562 * 0.23118 * 17 16 15 22 22 C 1.38954 * 120.07136 * 359.97438 * 21 17 16 23 23 N 1.38831 * 120.17892 * 179.97438 * 22 21 17 24 24 H 0.96996 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46710 * 60.00912 * 9 7 2 26 26 H 1.08994 * 109.47724 * 300.00701 * 9 7 2 27 27 H 1.09007 * 109.46888 * 60.00852 * 10 9 7 28 28 H 1.08994 * 109.47899 * 300.00482 * 10 9 7 29 29 H 1.07998 * 120.04611 * 0.02562 * 15 14 12 30 30 H 1.08000 * 119.82462 * 179.79355 * 16 15 14 31 31 H 1.08003 * 119.96300 * 180.02562 * 21 17 16 32 32 H 0.97003 * 120.00409 * 354.37968 * 23 22 21 33 33 H 0.97001 * 120.00244 * 174.37763 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 8 5.4736 -2.6365 0.0001 12 6 6.0854 -3.8373 -0.0003 13 8 5.4236 -4.8564 -0.0012 14 6 7.5563 -3.9143 0.0003 15 6 8.3216 -2.7512 0.1251 16 6 9.6966 -2.8297 0.1202 17 6 10.3278 -4.0584 0.0019 18 7 11.8063 -4.1285 0.0037 19 8 12.4643 -3.1088 0.1084 20 8 12.3650 -5.2058 -0.0996 21 6 9.5871 -5.2160 -0.1170 22 6 8.1988 -5.1571 -0.1184 23 7 7.4510 -6.3207 -0.2384 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6797 0.8896 26 1 3.8746 -0.6807 -0.8904 27 1 3.6579 -3.1505 -0.8898 28 1 3.6586 -3.1502 0.8902 29 1 7.8353 -1.7917 0.2220 30 1 10.2864 -1.9298 0.2134 31 1 10.0867 -6.1691 -0.2083 32 1 7.8946 -7.1675 -0.4033 33 1 6.4850 -6.2870 -0.1574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044918104.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:34 Heat of formation + Delta-G solvation = -63.816848 kcal Electronic energy + Delta-G solvation = -20637.132314 eV Core-core repulsion = 17052.343088 eV Total energy + Delta-G solvation = -3584.789226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.45732 -40.91764 -39.24597 -36.85589 -36.71762 -35.05447 -33.48663 -32.52509 -30.84387 -29.57873 -27.54945 -25.41647 -23.58774 -23.05786 -21.43118 -20.83652 -19.67337 -19.01300 -18.22213 -17.79621 -17.34937 -17.04104 -16.46927 -16.38617 -16.22243 -14.70556 -14.63174 -14.31502 -14.22726 -14.05405 -13.42412 -13.14722 -12.59239 -12.27824 -11.82305 -11.75322 -11.54566 -11.49313 -11.44758 -11.38978 -10.86675 -10.83845 -10.23611 -10.08648 -9.99762 -9.86372 -9.47276 -8.72169 -8.32092 -6.22534 -4.24939 -0.67730 0.74104 0.88814 1.06219 2.19852 2.66748 3.14131 3.20586 3.26664 3.28778 3.31147 4.02025 4.29524 4.31490 4.43252 4.48835 4.64231 5.10807 5.10847 5.20954 5.44692 5.54555 5.70126 5.77593 5.80084 6.11156 6.26185 6.39304 6.79459 6.97930 7.06552 7.35924 7.38739 7.49876 7.73836 8.28306 8.78113 9.36332 10.89871 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.028428 B = 0.003363 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.700711 B = 8323.361729 C = 9283.433741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.882 3.118 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.082 3.918 11 O -0.348 6.348 12 C 0.516 3.484 13 O -0.517 6.517 14 C -0.169 4.169 15 C -0.003 4.003 16 C -0.140 4.140 17 C 0.038 3.962 18 N 0.023 4.977 19 O -0.149 6.149 20 O -0.159 6.159 21 C -0.156 4.156 22 C 0.286 3.714 23 N -0.842 5.842 24 H 0.267 0.733 25 H 0.029 0.971 26 H 0.025 0.975 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.164 0.836 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.401 0.599 33 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.630 -9.204 -0.149 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.569 4.569 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.010 3.990 11 O -0.264 6.264 12 C 0.362 3.638 13 O -0.408 6.408 14 C -0.176 4.176 15 C -0.022 4.022 16 C -0.162 4.162 17 C -0.046 4.046 18 N 0.544 4.456 19 O -0.368 6.368 20 O -0.374 6.374 21 C -0.180 4.180 22 C 0.172 3.828 23 N -0.388 5.388 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.182 0.818 30 H 0.175 0.825 31 H 0.176 0.824 32 H 0.230 0.770 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 18.380 -9.331 -0.144 20.613 hybrid contribution 0.409 0.388 -0.068 0.568 sum 18.788 -8.942 -0.211 20.809 Atomic orbital electron populations 1.69885 1.06316 1.27362 1.49702 1.24938 0.94776 0.99235 0.93997 0.86748 0.80400 0.83231 0.78799 1.19992 1.21083 1.18748 1.20797 0.88101 0.95091 1.52886 0.90633 1.19645 0.97149 0.89826 0.98052 1.23538 0.71187 1.02093 1.02153 1.86553 1.27050 1.30408 1.82357 1.20646 0.87837 0.82615 0.72703 1.90469 1.66491 1.35855 1.48005 1.19045 0.90976 0.93165 1.14446 1.21357 0.91734 0.98733 0.90388 1.20738 0.94917 0.96466 1.04055 1.20991 0.78936 0.96568 1.08061 1.43678 1.03707 1.00465 0.97711 1.94555 1.64779 1.25090 1.52328 1.94539 1.73027 1.17078 1.52805 1.20271 0.91492 0.98774 1.07450 1.17312 0.89383 0.86819 0.89320 1.43507 1.12736 1.06117 1.76487 0.92307 0.95233 0.95674 0.91307 0.91269 0.81807 0.82458 0.82400 0.77003 0.73181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 13.96 55.43 0.77 -25.73 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 7 C -0.53 -14.38 9.66 -34.44 -0.33 -14.72 16 8 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.21 4.42 -27.88 -0.12 -0.33 16 10 C 0.08 1.59 5.41 37.16 0.20 1.79 16 11 O -0.35 -5.74 9.49 -40.67 -0.39 -6.12 16 12 C 0.52 7.53 7.87 34.41 0.27 7.80 16 13 O -0.52 -8.16 13.44 -19.28 -0.26 -8.42 16 14 C -0.17 -1.94 5.89 -104.82 -0.62 -2.56 16 15 C 0.00 -0.03 9.61 -39.19 -0.38 -0.40 16 16 C -0.14 -1.29 9.53 -39.62 -0.38 -1.66 16 17 C 0.04 0.38 6.85 -79.91 -0.55 -0.17 16 18 N 0.02 0.27 4.45 33.98 0.15 0.42 16 19 O -0.15 -1.84 18.43 -29.46 -0.54 -2.38 16 20 O -0.16 -1.93 18.42 -29.46 -0.54 -2.47 16 21 C -0.16 -1.40 9.38 -39.42 -0.37 -1.77 16 22 C 0.29 2.84 6.76 -83.61 -0.57 2.27 16 23 N -0.84 -7.27 8.93 32.55 0.29 -6.98 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 26 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.16 1.42 7.62 -52.49 -0.40 1.02 16 30 H 0.16 1.20 7.59 -52.49 -0.40 0.80 16 31 H 0.16 1.13 7.59 -52.48 -0.40 0.73 16 32 H 0.40 2.20 8.84 -40.82 -0.36 1.83 16 33 H 0.42 4.47 5.34 -40.94 -0.22 4.25 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -30.36 300.52 -6.56 -36.93 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -2.97 Total: 2.16 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.94 Total: -7.81 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 1.22 Total: -32.28 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -1.73 Total: -19.39 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.36 -6.56 -36.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044918104.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.889 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds