Wall clock time and date at job start Tue Mar 31 2020 01:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00076 * 2 1 4 4 H 1.48505 * 109.46641 * 269.99822 * 3 2 1 5 5 H 1.48503 * 109.47106 * 29.99486 * 3 2 1 6 6 H 1.48497 * 109.47342 * 149.99835 * 3 2 1 7 7 C 1.37881 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99963 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99690 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46789 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.47286 * 180.02562 * 10 9 7 12 12 C 1.34766 * 117.00156 * 180.02562 * 11 10 9 13 13 O 1.21519 * 119.99959 * 0.02562 * 12 11 10 14 14 C 1.47291 * 119.99689 * 180.02562 * 12 11 10 15 15 C 1.39794 * 120.21391 * 5.88475 * 14 12 11 16 16 C 1.37727 * 119.91974 * 180.23169 * 15 14 12 17 17 C 1.38638 * 120.35696 * 359.51974 * 16 15 14 18 18 N 1.48014 * 119.77808 * 180.25599 * 17 16 15 19 19 O 1.21801 * 120.00317 * 359.97438 * 18 17 16 20 20 O 1.21796 * 120.00024 * 179.97438 * 18 17 16 21 21 C 1.37944 * 120.43562 * 0.23118 * 17 16 15 22 22 C 1.38954 * 120.07136 * 359.97438 * 21 17 16 23 23 N 1.38831 * 120.17892 * 179.97438 * 22 21 17 24 24 H 0.96996 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46710 * 60.00912 * 9 7 2 26 26 H 1.08994 * 109.47724 * 300.00701 * 9 7 2 27 27 H 1.09007 * 109.46888 * 60.00852 * 10 9 7 28 28 H 1.08994 * 109.47899 * 300.00482 * 10 9 7 29 29 H 1.07998 * 120.04611 * 0.02562 * 15 14 12 30 30 H 1.08000 * 119.82462 * 179.79355 * 16 15 14 31 31 H 1.08003 * 119.96300 * 180.02562 * 21 17 16 32 32 H 0.97003 * 120.00409 * 354.37968 * 23 22 21 33 33 H 0.97001 * 120.00244 * 174.37763 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 8 5.4736 -2.6365 0.0001 12 6 6.0854 -3.8373 -0.0003 13 8 5.4236 -4.8564 -0.0012 14 6 7.5563 -3.9143 0.0003 15 6 8.3216 -2.7512 0.1251 16 6 9.6966 -2.8297 0.1202 17 6 10.3278 -4.0584 0.0019 18 7 11.8063 -4.1285 0.0037 19 8 12.4643 -3.1088 0.1084 20 8 12.3650 -5.2058 -0.0996 21 6 9.5871 -5.2160 -0.1170 22 6 8.1988 -5.1571 -0.1184 23 7 7.4510 -6.3207 -0.2384 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6797 0.8896 26 1 3.8746 -0.6807 -0.8904 27 1 3.6579 -3.1505 -0.8898 28 1 3.6586 -3.1502 0.8902 29 1 7.8353 -1.7917 0.2220 30 1 10.2864 -1.9298 0.2134 31 1 10.0867 -6.1691 -0.2083 32 1 7.8946 -7.1675 -0.4033 33 1 6.4850 -6.2870 -0.1574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044918104.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:34 Heat of formation + Delta-G solvation = -82.147871 kcal Electronic energy + Delta-G solvation = -20637.927207 eV Core-core repulsion = 17052.343088 eV Total energy + Delta-G solvation = -3585.584119 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.32619 -41.96811 -40.22877 -37.96136 -37.73065 -35.90243 -35.38180 -33.52039 -32.59697 -30.34268 -28.55302 -27.09436 -24.55142 -23.94715 -22.69527 -22.36643 -20.49838 -19.89390 -19.43756 -18.85695 -18.66224 -17.93756 -17.91395 -17.66845 -17.02466 -16.31040 -15.63131 -15.48129 -15.35840 -15.00325 -14.65981 -14.52713 -14.15427 -13.35440 -13.21237 -13.00972 -12.72496 -12.52720 -12.47631 -12.37930 -12.31393 -12.27289 -11.82240 -11.64453 -11.53730 -11.48056 -10.81833 -10.78492 -9.05591 -8.34457 -6.42858 -1.54582 -0.08935 0.07964 0.22515 1.18000 1.39591 1.41051 1.47627 1.53356 2.28992 2.34585 2.53820 3.01093 3.26563 3.40272 3.57567 3.68353 3.87611 4.15085 4.16870 4.35781 4.41599 4.61470 4.69171 4.81565 4.97455 5.01445 5.28036 5.29319 5.38310 5.51210 6.08254 6.14794 6.43454 6.48658 6.64063 6.69062 7.22582 8.81514 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.028428 B = 0.003363 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.700711 B = 8323.361729 C = 9283.433741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.240 1.240 7 C -0.542 4.542 8 H 0.036 0.964 9 C -0.005 4.005 10 C 0.095 3.905 11 O -0.347 6.347 12 C 0.513 3.487 13 O -0.534 6.534 14 C -0.186 4.186 15 C 0.005 3.995 16 C -0.135 4.135 17 C 0.032 3.968 18 N 0.024 4.976 19 O -0.162 6.162 20 O -0.166 6.166 21 C -0.144 4.144 22 C 0.288 3.712 23 N -0.835 5.835 24 H 0.270 0.730 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.176 0.824 30 H 0.174 0.826 31 H 0.179 0.821 32 H 0.416 0.584 33 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.097 -8.657 -0.174 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.163 1.163 7 C -0.580 4.580 8 H 0.054 0.946 9 C -0.042 4.042 10 C 0.022 3.978 11 O -0.262 6.262 12 C 0.361 3.639 13 O -0.426 6.426 14 C -0.193 4.193 15 C -0.014 4.014 16 C -0.157 4.157 17 C -0.051 4.051 18 N 0.543 4.457 19 O -0.379 6.379 20 O -0.381 6.381 21 C -0.167 4.167 22 C 0.172 3.828 23 N -0.381 5.381 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.193 0.807 30 H 0.192 0.808 31 H 0.196 0.804 32 H 0.248 0.752 33 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 20.898 -8.824 -0.172 22.685 hybrid contribution -0.356 0.050 -0.065 0.365 sum 20.542 -8.774 -0.237 22.338 Atomic orbital electron populations 1.70041 1.08422 1.28619 1.51445 1.25960 0.95627 1.03639 0.93481 0.85621 0.79694 0.77664 0.79501 1.18894 1.20980 1.16261 1.21118 0.90813 0.93744 1.52311 0.94567 1.19480 0.94020 0.92010 0.98735 1.23049 0.73160 0.99995 1.01638 1.86511 1.25007 1.31699 1.83020 1.21158 0.89016 0.81674 0.72027 1.90478 1.67185 1.36116 1.48790 1.18952 0.88939 0.94598 1.16838 1.21441 0.91768 0.98599 0.89635 1.20882 0.94671 0.96804 1.03314 1.21140 0.78006 0.97400 1.08530 1.43865 1.04277 1.00236 0.97342 1.94554 1.65316 1.25141 1.52848 1.94533 1.73519 1.17130 1.52954 1.20406 0.90884 0.99404 1.06054 1.17330 0.89681 0.86641 0.89106 1.43488 1.12379 1.06659 1.75601 0.92107 0.94351 0.94552 0.91930 0.91898 0.80691 0.80836 0.80418 0.75196 0.73985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.33 13.96 21.45 0.30 -57.04 16 2 C 0.01 0.61 5.47 84.66 0.46 1.07 16 3 Si 0.95 41.52 27.47 68.60 1.88 43.41 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.24 -9.46 6.54 99.48 0.65 -8.81 16 7 C -0.54 -29.86 9.66 25.60 0.25 -29.61 16 8 H 0.04 2.20 7.99 -2.91 -0.02 2.18 16 9 C -0.01 -0.22 4.42 29.85 0.13 -0.09 16 10 C 0.09 3.61 5.41 71.98 0.39 4.00 16 11 O -0.35 -10.93 9.49 -56.77 -0.54 -11.47 16 12 C 0.51 14.37 7.87 70.20 0.55 14.92 16 13 O -0.53 -16.51 13.44 19.77 0.27 -16.24 16 14 C -0.19 -3.90 5.89 -19.99 -0.12 -4.02 16 15 C 0.00 0.08 9.61 22.53 0.22 0.29 16 16 C -0.14 -2.11 9.53 22.24 0.21 -1.90 16 17 C 0.03 0.57 6.85 36.40 0.25 0.82 16 18 N 0.02 0.51 4.45 -46.40 -0.21 0.30 16 19 O -0.16 -3.71 18.43 18.88 0.35 -3.36 16 20 O -0.17 -3.70 18.42 18.89 0.35 -3.35 16 21 C -0.14 -2.20 9.38 22.37 0.21 -1.99 16 22 C 0.29 5.06 6.76 38.73 0.26 5.33 16 23 N -0.84 -12.84 8.93 -50.93 -0.45 -13.30 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.04 1.62 7.20 -2.38 -0.02 1.60 16 26 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16 27 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 28 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.18 2.55 7.62 -2.91 -0.02 2.52 16 30 H 0.17 2.13 7.59 -2.91 -0.02 2.11 16 31 H 0.18 1.97 7.59 -2.91 -0.02 1.95 16 32 H 0.42 3.62 8.84 -92.71 -0.82 2.80 16 33 H 0.42 8.28 5.34 -94.61 -0.51 7.78 16 Total: -1.00 -65.75 300.52 4.57 -61.18 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -0.19 Total: 11.04 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 2.82 Total: -11.17 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -0.36 Total: -70.03 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: 0.42 Total: -34.43 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.88 Total: 43.41 kcal Total: -65.75 4.57 -61.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044918104.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.965 kcal (2) G-P(sol) polarization free energy of solvation -65.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds