Wall clock time and date at job start Tue Mar 31 2020 01:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99827 * 2 1 4 4 H 1.48503 * 109.47313 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47139 * 299.99980 * 3 2 1 6 6 H 1.48500 * 109.47289 * 60.00100 * 3 2 1 7 7 C 1.37882 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99773 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99719 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46647 * 180.02562 * 9 7 2 11 11 S 1.81408 * 109.46931 * 180.02562 * 10 9 7 12 12 C 1.76200 * 102.99896 * 180.02562 * 11 10 9 13 13 C 1.38926 * 119.97993 * 359.97438 * 12 11 10 14 14 C 1.38272 * 120.13552 * 179.97438 * 13 12 11 15 15 C 1.38471 * 119.81936 * 0.05427 * 14 13 12 16 16 C 1.38770 * 120.19001 * 359.95499 * 15 14 13 17 17 C 1.38403 * 120.15597 * 0.02562 * 16 15 14 18 18 O 1.36480 * 119.59864 * 179.97438 * 16 15 14 19 19 C 1.42716 * 115.88235 * 68.28422 * 18 16 15 20 20 C 1.52065 * 110.87805 * 275.48594 * 19 18 16 21 21 C 1.52064 * 112.29068 * 64.86499 * 20 19 18 22 22 O 1.36590 * 120.22898 * 179.97438 * 15 14 13 23 23 H 0.96999 * 120.00250 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47065 * 60.00349 * 9 7 2 25 25 H 1.08996 * 109.47018 * 299.99927 * 9 7 2 26 26 H 1.09000 * 109.47219 * 60.00302 * 10 9 7 27 27 H 1.09002 * 109.47359 * 300.00093 * 10 9 7 28 28 H 1.07999 * 119.93312 * 0.02562 * 13 12 11 29 29 H 1.07996 * 120.09323 * 180.02562 * 14 13 12 30 30 H 1.07997 * 120.17029 * 179.97438 * 17 16 15 31 31 H 1.09003 * 109.08491 * 155.17557 * 19 18 16 32 32 H 1.09000 * 109.24922 * 35.90185 * 19 18 16 33 33 H 1.09002 * 108.90269 * 304.16906 * 20 19 18 34 34 H 1.08997 * 108.90347 * 185.56353 * 20 19 18 35 35 H 1.08998 * 109.21747 * 55.57370 * 21 20 19 36 36 H 1.08998 * 109.21665 * 174.90772 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3385 -5.2331 -0.0013 12 6 2.6272 -6.4347 -0.0004 13 6 3.9556 -6.0280 0.0000 14 6 4.9695 -6.9682 0.0012 15 6 4.6575 -8.3173 0.0008 16 6 3.3316 -8.7269 0.0002 17 6 2.3141 -7.7887 -0.0006 18 8 3.0379 -10.0597 -0.0007 19 6 3.3674 -10.7711 1.1918 20 6 4.8235 -11.2091 1.1768 21 6 5.7813 -10.0282 1.1943 22 8 5.6524 -9.2531 0.0015 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 4.1969 -4.9753 0.0003 29 1 6.0019 -6.6512 0.0020 30 1 1.2821 -8.1073 -0.0015 31 1 2.7288 -11.6510 1.2699 32 1 3.1956 -10.1265 2.0539 33 1 5.0057 -11.7983 0.2780 34 1 5.0141 -11.8315 2.0511 35 1 5.5593 -9.3990 2.0563 36 1 6.8039 -10.3968 1.2740 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058247845.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:11 Heat of formation + Delta-G solvation = -62.389356 kcal Electronic energy + Delta-G solvation = -18796.041720 eV Core-core repulsion = 15757.607608 eV Total energy + Delta-G solvation = -3038.434111 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89169 -37.62402 -37.57285 -33.82840 -33.11320 -31.14588 -30.63579 -29.23626 -26.75489 -25.41454 -23.25604 -22.17238 -21.83261 -21.13623 -18.69417 -17.53140 -17.08835 -16.59806 -15.92381 -15.55921 -15.47363 -14.57815 -14.50172 -14.24364 -14.12147 -13.98777 -13.89948 -13.48674 -12.71700 -12.32520 -12.19247 -12.08034 -11.66680 -11.26190 -11.15326 -11.08270 -10.66949 -10.60963 -10.37339 -10.14705 -9.83184 -9.70609 -9.30262 -9.18482 -8.77199 -8.49094 -7.05095 -6.12868 -4.17888 0.97763 1.16802 1.90410 2.95167 3.20707 3.24809 3.31042 3.32744 3.36128 3.81154 4.35741 4.36697 4.44137 4.77955 4.82406 4.98540 5.04063 5.15603 5.21231 5.23244 5.25809 5.43200 5.44961 5.65186 5.77922 5.81763 5.91603 6.02340 6.22559 6.25806 6.40878 6.57779 6.98019 7.45433 7.47414 7.52092 7.82121 8.18305 8.86835 9.46742 10.97987 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.040704 B = 0.003179 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.726134 B = 8804.316665 C = 9335.050508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.037 3.963 10 C -0.084 4.084 11 S -0.126 6.126 12 C -0.064 4.064 13 C -0.128 4.128 14 C -0.094 4.094 15 C 0.045 3.955 16 C 0.082 3.918 17 C -0.106 4.106 18 O -0.318 6.318 19 C 0.059 3.941 20 C -0.186 4.186 21 C 0.058 3.942 22 O -0.319 6.319 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.028 0.972 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.432 -20.492 3.852 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.002 4.002 10 C -0.231 4.231 11 S 0.122 5.878 12 C -0.178 4.178 13 C -0.152 4.152 14 C -0.114 4.114 15 C -0.002 4.002 16 C 0.036 3.964 17 C -0.130 4.130 18 O -0.235 6.235 19 C -0.016 4.016 20 C -0.224 4.224 21 C -0.017 4.017 22 O -0.235 6.235 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.156 0.844 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.120 0.880 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.035 -20.570 3.568 22.370 hybrid contribution 1.808 1.008 0.319 2.095 sum 9.843 -19.561 3.887 22.241 Atomic orbital electron populations 1.69972 1.06097 1.26919 1.49825 1.25014 0.94913 0.99391 0.94912 0.86447 0.80008 0.83300 0.77728 1.19634 1.20840 1.20856 1.21089 0.93084 0.90026 1.52007 0.92244 1.18935 0.93346 0.89196 0.98747 1.24088 1.02376 0.92584 1.04101 1.85753 1.11796 0.99949 1.90270 1.21913 0.97388 0.96892 1.01618 1.21274 0.91026 1.00401 1.02527 1.20966 1.00066 0.90566 0.99782 1.19034 0.86642 0.88941 1.05592 1.18939 0.91425 0.83803 1.02203 1.20635 0.99284 0.90057 1.03059 1.86336 1.82810 1.17051 1.37291 1.22586 0.95653 0.96702 0.86614 1.22470 0.95896 0.99735 1.04299 1.22601 1.00205 0.92066 0.86812 1.86383 1.51033 1.48916 1.37208 0.92727 0.95306 0.95347 0.90393 0.90342 0.84418 0.84668 0.84420 0.87976 0.92390 0.89905 0.89351 0.92510 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.04 0.91 4.98 -27.88 -0.14 0.78 16 10 C -0.08 -1.66 4.27 37.16 0.16 -1.50 16 11 S -0.13 -2.28 21.92 -107.50 -2.36 -4.63 16 12 C -0.06 -1.02 6.11 -39.05 -0.24 -1.26 16 13 C -0.13 -1.88 9.36 -39.31 -0.37 -2.25 16 14 C -0.09 -1.25 10.00 -39.48 -0.39 -1.65 16 15 C 0.04 0.63 5.73 -39.30 -0.23 0.40 16 16 C 0.08 1.17 5.72 -39.32 -0.23 0.95 16 17 C -0.11 -1.57 9.74 -39.25 -0.38 -1.95 16 18 O -0.32 -4.24 10.16 -36.74 -0.37 -4.61 16 19 C 0.06 0.54 6.49 36.68 0.24 0.78 16 20 C -0.19 -1.43 5.93 -27.68 -0.16 -1.59 16 21 C 0.06 0.52 6.51 36.68 0.24 0.76 16 22 O -0.32 -4.12 10.16 -37.11 -0.38 -4.50 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.47 7.74 -51.92 -0.40 1.07 16 27 H 0.08 1.50 7.74 -51.92 -0.40 1.09 16 28 H 0.14 1.97 5.85 -52.49 -0.31 1.66 16 29 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.48 7.93 -51.93 -0.41 0.07 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -30.37 314.02 -9.43 -39.80 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -4.86 Total: -2.02 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -1.91 Total: -19.42 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.74 Total: -25.29 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.75 Total: -9.12 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.36 Total: -4.63 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.37 -9.43 -39.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058247845.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.585 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds