Wall clock time and date at job start Tue Mar 31 2020 01:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99878 * 2 1 4 4 H 1.48506 * 109.46977 * 240.00031 * 3 2 1 5 5 H 1.48498 * 109.47332 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47326 * 120.00166 * 3 2 1 7 7 C 1.37878 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99586 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47254 * 180.02562 * 9 7 2 11 11 O 1.45198 * 109.47320 * 179.97438 * 10 9 7 12 12 C 1.34228 * 117.00156 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99986 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.00024 * 180.02562 * 12 11 10 15 15 C 1.53003 * 109.46993 * 179.97438 * 14 12 11 16 16 S 1.81394 * 109.46998 * 179.97438 * 15 14 12 17 17 C 1.76199 * 103.00056 * 180.02562 * 16 15 14 18 18 C 1.38975 * 120.07816 * 180.02562 * 17 16 15 19 19 C 1.38086 * 119.91892 * 179.97438 * 18 17 16 20 20 C 1.38310 * 120.07752 * 359.97438 * 19 18 17 21 21 C 1.38301 * 120.16067 * 0.02562 * 20 19 18 22 22 C 1.38081 * 120.08205 * 359.97438 * 21 20 19 23 23 H 0.96998 * 120.00185 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47346 * 59.99739 * 9 7 2 25 25 H 1.08996 * 109.46945 * 300.00001 * 9 7 2 26 26 H 1.09002 * 109.47264 * 59.99557 * 10 9 7 27 27 H 1.09001 * 109.47358 * 300.00122 * 10 9 7 28 28 H 1.08998 * 109.46859 * 60.00002 * 14 12 11 29 29 H 1.08996 * 109.47114 * 300.00140 * 14 12 11 30 30 H 1.09000 * 109.46939 * 59.99901 * 15 14 12 31 31 H 1.09004 * 109.47160 * 299.99745 * 15 14 12 32 32 H 1.07995 * 120.04427 * 359.69664 * 18 17 16 33 33 H 1.08000 * 119.96089 * 179.97438 * 19 18 17 34 34 H 1.07995 * 119.91521 * 179.97438 * 20 19 18 35 35 H 1.07996 * 119.95950 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.04201 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 8 1.5193 -4.9196 0.0024 12 6 2.2504 -6.0453 0.0030 13 8 3.4570 -5.9820 0.0035 14 6 1.5662 -7.3881 0.0031 15 6 2.6200 -8.4974 0.0032 16 16 1.7965 -10.1136 0.0041 17 6 3.1463 -11.2462 0.0049 18 6 2.9068 -12.6152 0.0051 19 6 3.9671 -13.4998 0.0052 20 6 5.2661 -13.0249 0.0045 21 6 5.5081 -11.6632 0.0043 22 6 4.4529 -10.7727 0.0042 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5572 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8713 -3.6039 0.8922 27 1 2.8727 -3.6048 -0.8877 28 1 0.9438 -7.4787 -0.8871 29 1 0.9431 -7.4783 0.8928 30 1 3.2427 -8.4068 0.8932 31 1 3.2428 -8.4070 -0.8868 32 1 1.8928 -12.9867 0.0097 33 1 3.7818 -14.5638 0.0058 34 1 6.0933 -13.7191 0.0050 35 1 6.5237 -11.2960 0.0042 36 1 4.6426 -9.7095 0.0044 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058817530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:09 Heat of formation + Delta-G solvation = -81.164599 kcal Electronic energy + Delta-G solvation = -17800.262871 eV Core-core repulsion = 14761.014604 eV Total energy + Delta-G solvation = -3039.248267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.07919 -39.21122 -36.36481 -33.47764 -33.26029 -31.38259 -31.24510 -30.29273 -26.06701 -24.53781 -23.04128 -22.72142 -21.10134 -20.38960 -18.03587 -17.70384 -16.60587 -16.50605 -16.18992 -15.85879 -15.32419 -14.92835 -14.82895 -14.53411 -13.87941 -13.68352 -13.46509 -13.08550 -12.71617 -12.59259 -12.33048 -11.78106 -11.73874 -11.44509 -11.26231 -11.09365 -10.77747 -10.74056 -10.49089 -10.32455 -10.07694 -9.70192 -9.66116 -9.34504 -9.32244 -8.46667 -7.70011 -6.12734 -4.17504 0.87754 1.03261 1.10704 2.07161 2.44827 3.16972 3.28354 3.32648 3.36585 3.38262 4.35961 4.36975 4.52117 4.60101 4.60327 4.77284 5.02637 5.07471 5.17077 5.23662 5.32364 5.37467 5.39682 5.56123 5.64717 5.93309 6.03260 6.03796 6.04369 6.16606 6.55977 6.58716 6.90876 7.51770 7.58562 7.82961 8.09733 8.21212 8.87714 9.46958 10.98650 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.052417 B = 0.002335 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.054218 B =11987.868366 C =12490.872300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.354 6.354 12 C 0.462 3.538 13 O -0.519 6.519 14 C -0.102 4.102 15 C -0.097 4.097 16 S -0.109 6.109 17 C -0.082 4.082 18 C -0.102 4.102 19 C -0.103 4.103 20 C -0.128 4.128 21 C -0.100 4.100 22 C -0.133 4.133 23 H 0.264 0.736 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.814 -25.962 0.012 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.270 6.270 12 C 0.303 3.697 13 O -0.409 6.409 14 C -0.140 4.140 15 C -0.246 4.246 16 S 0.136 5.864 17 C -0.194 4.194 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.148 4.148 21 C -0.119 4.119 22 C -0.156 4.156 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.745 -25.869 0.013 26.301 hybrid contribution 1.974 1.226 0.000 2.324 sum 6.719 -24.643 0.013 25.542 Atomic orbital electron populations 1.69962 1.06085 1.27150 1.49572 1.24989 0.94938 0.99409 0.94829 0.86519 0.79475 0.82433 0.78785 1.20063 1.21098 1.20058 1.20931 0.93130 0.90109 1.52459 0.92313 1.19173 0.94185 0.88985 0.98936 1.23685 0.96414 0.78619 1.01017 1.86524 1.42361 1.15795 1.82345 1.23200 0.86425 0.87193 0.72839 1.90639 1.15778 1.88382 1.46113 1.20973 0.98186 0.87653 1.07234 1.23459 1.00804 0.92780 1.07512 1.85410 1.10346 0.98328 1.92288 1.21771 0.96330 0.96984 1.04350 1.20771 0.99659 0.90837 1.01280 1.21096 0.92420 0.99525 0.99277 1.21206 0.96976 0.95569 1.01064 1.21105 0.98859 0.93282 0.98704 1.21308 0.91560 1.00438 1.02332 0.92613 0.95303 0.95308 0.92226 0.92220 0.86691 0.86686 0.88264 0.88258 0.85446 0.85527 0.85823 0.85611 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.63 5.35 -27.89 -0.15 0.48 16 10 C 0.08 1.65 5.40 37.16 0.20 1.85 16 11 O -0.35 -6.85 10.22 -39.25 -0.40 -7.26 16 12 C 0.46 7.53 7.96 36.01 0.29 7.82 16 13 O -0.52 -9.65 15.73 -18.75 -0.29 -9.95 16 14 C -0.10 -1.14 5.82 -27.88 -0.16 -1.31 16 15 C -0.10 -1.03 3.62 37.16 0.13 -0.89 16 16 S -0.11 -1.10 21.92 -107.50 -2.36 -3.46 16 17 C -0.08 -0.83 6.11 -39.04 -0.24 -1.07 16 18 C -0.10 -0.91 9.79 -39.36 -0.39 -1.29 16 19 C -0.10 -0.79 10.04 -39.61 -0.40 -1.18 16 20 C -0.13 -0.97 10.04 -39.53 -0.40 -1.36 16 21 C -0.10 -0.85 10.04 -39.62 -0.40 -1.25 16 22 C -0.13 -1.32 9.36 -39.37 -0.37 -1.69 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 27 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 28 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.10 1.07 7.70 -51.92 -0.40 0.67 16 31 H 0.10 1.07 7.71 -51.92 -0.40 0.67 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.13 1.24 5.88 -52.49 -0.31 0.93 16 LS Contribution 328.55 15.07 4.95 4.95 Total: -1.00 -31.26 328.55 -9.55 -40.81 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.88 Total: -2.52 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.29 Total: -13.37 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.50 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.70 Total: -17.20 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -2.36 Total: -3.46 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.26 -9.55 -40.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.358 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds