Wall clock time and date at job start Tue Mar 31 2020 01:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00035 * 2 1 4 4 H 1.48495 * 109.47197 * 270.00728 * 3 2 1 5 5 H 1.48501 * 109.46966 * 30.00412 * 3 2 1 6 6 H 1.48493 * 109.47288 * 150.00165 * 3 2 1 7 7 C 1.37872 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00087 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00125 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47431 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47265 * 180.02562 * 10 9 7 12 12 O 1.45207 * 109.47367 * 180.02562 * 11 10 9 13 13 C 1.34894 * 117.00350 * 179.97438 * 12 11 10 14 14 O 1.21629 * 119.99563 * 0.02562 * 13 12 11 15 15 C 1.46392 * 120.00169 * 179.97438 * 13 12 11 16 16 S 1.75838 * 125.46288 * 0.27554 * 15 13 12 17 17 C 1.70610 * 91.56448 * 180.02562 * 16 15 13 18 18 C 1.33862 * 110.96197 * 359.68306 * 17 16 15 19 19 C 1.36747 * 125.46601 * 180.02562 * 15 13 12 20 20 C 1.50706 * 123.35439 * 359.96335 * 19 15 13 21 21 C 1.52992 * 117.50097 * 188.75910 * 20 19 15 22 22 C 1.53002 * 117.49537 * 120.09872 * 20 19 15 23 23 H 0.96998 * 120.00459 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46780 * 60.00172 * 9 7 2 25 25 H 1.08998 * 109.47645 * 299.99839 * 9 7 2 26 26 H 1.09000 * 109.47322 * 60.00023 * 10 9 7 27 27 H 1.09000 * 109.47521 * 300.00356 * 10 9 7 28 28 H 1.09004 * 109.46912 * 60.00515 * 11 10 9 29 29 H 1.08998 * 109.47679 * 300.00081 * 11 10 9 30 30 H 1.08002 * 124.52133 * 179.97438 * 17 16 15 31 31 H 1.08004 * 122.44260 * 180.22687 * 18 17 16 32 32 H 1.09003 * 115.54847 * 334.43843 * 20 19 15 33 33 H 1.09006 * 117.49875 * 0.02562 * 21 20 19 34 34 H 1.09006 * 117.50077 * 145.02340 * 21 20 19 35 35 H 1.08998 * 117.49614 * 214.98003 * 22 20 19 36 36 H 1.08996 * 117.50180 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0009 12 8 6.0356 -4.0055 -0.0014 13 6 7.3729 -4.1822 -0.0020 14 8 8.1137 -3.2176 -0.0016 15 6 7.9324 -5.5350 -0.0019 16 16 6.9990 -7.0251 -0.0081 17 6 8.4195 -7.9700 -0.0032 18 6 9.5105 -7.1944 -0.0042 19 6 9.2649 -5.8425 -0.0020 20 6 10.3553 -4.8022 -0.0029 21 6 11.7923 -5.2851 -0.2094 22 6 11.3365 -4.8063 1.1712 23 1 -0.4851 0.8400 0.0004 24 1 3.8751 -0.6804 0.8889 25 1 3.8746 -0.6801 -0.8911 26 1 3.6579 -3.1506 -0.8907 27 1 3.6585 -3.1502 0.8892 28 1 5.9148 -2.1226 0.8891 29 1 5.9149 -2.1227 -0.8909 30 1 8.4363 -9.0499 -0.0042 31 1 10.5109 -7.6016 -0.0052 32 1 10.0830 -3.8360 -0.4278 33 1 11.9490 -6.3553 -0.3452 34 1 12.4655 -4.6366 -0.7701 35 1 11.7100 -3.8429 1.5182 36 1 11.1935 -5.5616 1.9439 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063974162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:21 Heat of formation + Delta-G solvation = -57.595884 kcal Electronic energy + Delta-G solvation = -18552.641438 eV Core-core repulsion = 15514.415188 eV Total energy + Delta-G solvation = -3038.226251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.54019 -39.95186 -37.71443 -36.62740 -35.94798 -33.90451 -31.36063 -29.44039 -26.77107 -24.86197 -23.47198 -23.06712 -22.79403 -22.10416 -19.87109 -19.27478 -18.89454 -17.73937 -17.68377 -17.38312 -16.35767 -16.03712 -15.82685 -15.53795 -14.82689 -14.68813 -14.40488 -14.37186 -13.85706 -13.75166 -13.42762 -12.92426 -12.87247 -12.64700 -12.39978 -12.16778 -12.07295 -11.90300 -11.77304 -11.64633 -11.47109 -11.43586 -11.38631 -11.15346 -10.78778 -9.91657 -9.37979 -8.31423 -6.36583 -0.68546 0.44014 0.93986 1.16784 1.36053 1.37522 1.49359 1.55371 1.76574 2.34733 3.01794 3.03649 3.57242 3.74719 3.85507 3.96232 3.98724 4.05137 4.15974 4.26887 4.34119 4.52525 4.66666 4.70534 4.75070 4.86034 4.92626 5.00586 5.06897 5.17337 5.21826 5.27530 5.40274 5.46022 5.52323 5.60708 6.24341 6.58065 6.71162 7.27934 8.85211 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.028458 B = 0.003289 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.684239 B = 8511.826866 C = 9400.521275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.036 0.964 9 C -0.008 4.008 10 C -0.092 4.092 11 C 0.077 3.923 12 O -0.359 6.359 13 C 0.533 3.467 14 O -0.526 6.526 15 C -0.309 4.309 16 S 0.252 5.748 17 C -0.203 4.203 18 C -0.163 4.163 19 C 0.026 3.974 20 C -0.142 4.142 21 C -0.150 4.150 22 C -0.159 4.159 23 H 0.268 0.732 24 H 0.026 0.974 25 H 0.025 0.975 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.210 0.790 31 H 0.175 0.825 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.477 -17.568 0.367 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.572 4.572 8 H 0.054 0.946 9 C -0.046 4.046 10 C -0.129 4.129 11 C 0.004 3.996 12 O -0.276 6.276 13 C 0.379 3.621 14 O -0.418 6.418 15 C -0.427 4.427 16 S 0.523 5.477 17 C -0.340 4.340 18 C -0.193 4.193 19 C 0.010 3.990 20 C -0.162 4.162 21 C -0.187 4.187 22 C -0.196 4.196 23 H 0.077 0.923 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.227 0.773 31 H 0.193 0.807 32 H 0.123 0.877 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 23.888 -17.543 0.360 29.639 hybrid contribution 0.986 1.478 -0.035 1.777 sum 24.874 -16.065 0.324 29.612 Atomic orbital electron populations 1.70056 1.08273 1.28298 1.52349 1.25996 0.95643 1.03511 0.93981 0.85663 0.79515 0.78206 0.79335 1.19026 1.20786 1.17015 1.21389 0.91627 0.93409 1.50821 0.94604 1.19440 0.94375 0.93517 0.97239 1.21327 0.90436 0.98563 1.02619 1.23225 0.95253 0.78462 1.02642 1.86564 1.23263 1.33746 1.84066 1.20065 0.80687 0.88883 0.72461 1.90794 1.60514 1.42600 1.47867 1.23387 0.98113 0.95378 1.25808 1.83502 1.06781 0.91777 1.65662 1.25949 0.96698 1.07007 1.04394 1.20013 1.02018 0.90335 1.06931 1.19022 0.90894 0.95244 0.93840 1.20979 0.89439 0.98680 1.07085 1.23203 0.93628 1.03159 0.98705 1.23060 1.00899 1.03785 0.91903 0.92347 0.95591 0.95687 0.91794 0.91820 0.91024 0.90956 0.77348 0.80733 0.87672 0.86317 0.87388 0.88193 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 2 C 0.01 0.34 5.47 84.65 0.46 0.80 16 3 Si 0.95 44.54 27.47 68.60 1.88 46.42 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 7 C -0.53 -31.18 9.66 25.60 0.25 -30.94 16 8 H 0.04 2.29 7.99 -2.91 -0.02 2.26 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.09 -3.71 5.53 30.59 0.17 -3.54 16 11 C 0.08 2.75 5.48 71.98 0.39 3.15 16 12 O -0.36 -12.34 10.08 -58.08 -0.59 -12.93 16 13 C 0.53 17.53 7.92 69.94 0.55 18.08 16 14 O -0.53 -19.13 14.09 19.41 0.27 -18.86 16 15 C -0.31 -8.09 6.45 24.04 0.16 -7.94 16 16 S 0.25 4.82 22.92 -56.49 -1.29 3.53 16 17 C -0.20 -2.50 10.92 66.82 0.73 -1.77 16 18 C -0.16 -2.33 9.46 21.08 0.20 -2.13 16 19 C 0.03 0.57 5.60 -20.41 -0.11 0.46 16 20 C -0.14 -3.01 5.44 -11.54 -0.06 -3.07 16 21 C -0.15 -1.98 9.95 30.62 0.30 -1.68 16 22 C -0.16 -2.56 10.22 30.62 0.31 -2.25 16 23 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 24 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 25 H 0.02 1.13 7.57 -2.39 -0.02 1.11 16 26 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.06 2.58 8.14 -2.39 -0.02 2.57 16 28 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.21 0.97 8.06 -2.91 -0.02 0.95 16 31 H 0.18 1.42 6.61 -2.91 -0.02 1.40 16 32 H 0.11 2.89 6.18 -2.39 -0.01 2.87 16 33 H 0.12 1.03 6.56 -2.38 -0.02 1.01 16 34 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -71.21 320.87 5.08 -66.13 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.03 Total: 6.49 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 3.47 Total: -31.10 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.30 Total: -59.69 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.31 Total: -31.78 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.29 Total: 3.53 kcal Total: -71.21 5.08 -66.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063974162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.538 kcal (2) G-P(sol) polarization free energy of solvation -71.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds