Wall clock time and date at job start Tue Mar 31 2020 01:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38244 * 119.99916 * 2 1 4 4 C 1.38233 * 119.99944 * 180.02562 * 3 2 1 5 5 C 1.38239 * 120.00027 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.99797 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47684 * 24.99771 * 6 5 4 8 8 C 1.53003 * 109.47132 * 264.99793 * 6 5 4 9 9 O 1.45198 * 109.47243 * 144.99928 * 6 5 4 10 10 C 1.34230 * 117.00173 * 209.99687 * 9 6 5 11 11 O 1.20822 * 120.00010 * 359.97438 * 10 9 6 12 12 C 1.50706 * 119.99763 * 180.02562 * 10 9 6 13 13 S 1.81003 * 109.46853 * 179.97438 * 12 10 9 14 14 C 1.76196 * 99.99846 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.38802 * 119.99637 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99570 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47213 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46950 * 120.00258 * 18 16 14 21 21 H 1.48503 * 109.47177 * 240.00017 * 18 16 14 22 22 C 1.38238 * 119.99862 * 0.25254 * 5 4 3 23 23 C 1.38230 * 120.00069 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47314 * 90.00060 * 1 2 3 25 25 H 1.09000 * 109.47091 * 209.99806 * 1 2 3 26 26 H 1.09003 * 109.46916 * 329.99675 * 1 2 3 27 27 H 1.08001 * 119.99924 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.99954 * 179.97438 * 4 3 2 29 29 H 1.08995 * 109.46990 * 300.00259 * 8 6 5 30 30 H 1.08999 * 109.47111 * 60.00141 * 8 6 5 31 31 H 1.08999 * 109.47362 * 179.97438 * 8 6 5 32 32 H 1.09000 * 109.47318 * 299.99486 * 12 10 9 33 33 H 1.09000 * 109.47161 * 60.00117 * 12 10 9 34 34 H 0.96995 * 120.00407 * 180.02562 * 17 16 14 35 35 H 1.08003 * 119.99477 * 179.72582 * 22 5 4 36 36 H 1.07998 * 120.00177 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0001 -0.0017 7 1 6.1424 0.9317 0.4319 8 6 6.2876 -0.1263 -1.4391 9 8 6.2633 -1.1208 0.7836 10 6 7.4435 -0.9654 1.4039 11 8 8.0516 0.0728 1.2940 12 6 8.0105 -2.0863 2.2366 13 16 9.5996 -1.5742 2.9356 14 6 10.0217 -3.0298 3.8344 15 1 9.3565 -3.8806 3.8275 16 6 11.2086 -3.0825 4.5521 17 7 12.0186 -2.0450 4.5617 18 14 11.6557 -4.6254 5.5055 19 1 10.5856 -5.6406 5.3343 20 1 12.9395 -5.1689 4.9938 21 1 11.7979 -4.2934 6.9460 22 6 3.5805 -1.1971 -0.0053 23 6 2.1982 -1.1971 -0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1325 0.0004 28 1 4.1205 2.1326 -0.0010 29 1 5.9239 -1.0578 -1.8726 30 1 5.9238 0.7153 -2.0286 31 1 7.3775 -0.1258 -1.4400 32 1 7.3182 -2.3253 3.0439 33 1 8.1561 -2.9664 1.6103 34 1 12.8482 -2.0820 5.0630 35 1 4.1206 -2.1324 -0.0098 36 1 1.6582 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066873217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:36 Heat of formation + Delta-G solvation = -76.356313 kcal Electronic energy + Delta-G solvation = -18481.276006 eV Core-core repulsion = 15442.236242 eV Total energy + Delta-G solvation = -3039.039764 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.38885 -39.31925 -36.39496 -33.83494 -32.48645 -31.08665 -31.01942 -29.38156 -26.94289 -25.56753 -23.40552 -22.97996 -21.20338 -20.21661 -17.97840 -17.29360 -16.77527 -15.90762 -15.45935 -15.35751 -14.85555 -14.82675 -14.17860 -14.06217 -13.69186 -13.54709 -13.49275 -12.97574 -12.68222 -12.49971 -12.40203 -12.10556 -11.96122 -11.58857 -11.20836 -11.09759 -11.07949 -10.89801 -10.79782 -10.48524 -9.99096 -9.89035 -9.12475 -9.07060 -8.70491 -8.35353 -6.60190 -6.27553 -3.99981 1.09509 1.26018 2.65170 2.67358 3.19621 3.23957 3.29391 3.49117 3.61371 4.14592 4.46292 4.64031 4.72353 4.86179 4.96534 5.02100 5.08383 5.15157 5.19625 5.31405 5.31834 5.43297 5.51752 5.54902 5.71306 5.74510 5.78478 5.87543 5.93501 6.04506 6.08804 6.23636 6.40451 6.43849 6.76858 6.83222 7.55658 8.18465 8.30555 9.18125 10.80021 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.033093 B = 0.003101 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.900823 B = 9025.732558 C = 9493.275948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.122 4.122 4 C -0.104 4.104 5 C -0.091 4.091 6 C 0.126 3.874 7 H 0.094 0.906 8 C -0.162 4.162 9 O -0.353 6.353 10 C 0.480 3.520 11 O -0.488 6.488 12 C -0.128 4.128 13 S -0.059 6.059 14 C -0.535 4.535 15 H 0.076 0.924 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.922 3.078 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.088 4.088 23 C -0.123 4.123 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.269 0.731 35 H 0.130 0.870 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.407 3.309 -10.868 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.122 4.122 5 C -0.091 4.091 6 C 0.071 3.929 7 H 0.111 0.889 8 C -0.220 4.220 9 O -0.272 6.272 10 C 0.321 3.679 11 O -0.373 6.373 12 C -0.276 4.276 13 S 0.167 5.833 14 C -0.683 4.683 15 H 0.095 0.905 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.748 3.252 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.106 4.106 23 C -0.141 4.141 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.510 4.704 -10.971 22.872 hybrid contribution -0.292 -2.002 0.725 2.149 sum -19.802 2.701 -10.246 22.459 Atomic orbital electron populations 1.20793 0.91254 1.02796 1.02238 1.19966 0.96072 0.93297 0.99434 1.20953 0.93803 0.97589 1.01664 1.20949 0.94273 0.97267 0.99717 1.19660 0.93565 0.93958 1.01899 1.21356 0.89835 0.90071 0.91676 0.88856 1.22164 1.02370 1.03030 0.94398 1.86569 1.37432 1.43132 1.60024 1.23309 0.78465 0.88908 0.77200 1.90651 1.58737 1.28842 1.59075 1.23298 1.05140 0.98132 1.01058 1.85411 1.13148 1.23152 1.61551 1.22884 1.09089 1.01021 1.35312 0.90544 1.25009 0.95128 0.97413 0.96010 1.70017 1.11141 1.29236 1.39854 0.86070 0.78497 0.81448 0.79218 1.19494 1.20508 1.20505 1.21056 0.93871 0.98140 0.97538 1.21059 0.94111 0.97573 1.01364 0.91221 0.91523 0.91575 0.85936 0.85776 0.91507 0.90824 0.91198 0.87959 0.87931 0.92124 0.85219 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.09 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 4 C -0.10 -1.11 9.68 -39.58 -0.38 -1.50 16 5 C -0.09 -1.11 5.01 -104.63 -0.52 -1.63 16 6 C 0.13 1.73 2.77 -27.88 -0.08 1.65 16 7 H 0.09 1.37 7.07 -51.93 -0.37 1.00 16 8 C -0.16 -1.93 9.53 37.16 0.35 -1.58 16 9 O -0.35 -5.74 9.04 -39.26 -0.35 -6.10 16 10 C 0.48 9.30 7.95 36.01 0.29 9.59 16 11 O -0.49 -10.70 15.08 -18.75 -0.28 -10.98 16 12 C -0.13 -2.64 6.27 36.01 0.23 -2.42 16 13 S -0.06 -1.58 20.58 -107.50 -2.21 -3.79 16 14 C -0.53 -15.05 9.50 30.94 0.29 -14.76 16 15 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 16 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 17 N -0.87 -25.82 13.22 55.49 0.73 -25.08 16 18 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 C -0.09 -1.03 9.35 -39.58 -0.37 -1.40 16 23 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 26 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.97 8.14 -51.92 -0.42 1.54 16 33 H 0.10 1.95 8.14 -51.92 -0.42 1.52 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.13 1.48 7.63 -52.48 -0.40 1.08 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 329.65 15.07 4.97 4.97 Total: -1.00 -32.25 329.65 -8.44 -40.69 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.96 Total: -0.83 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -1.31 Total: -15.05 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.73 Total: -25.08 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.64 Total: -17.08 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.25 -8.44 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066873217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.665 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds