Wall clock time and date at job start Tue Mar 31 2020 01:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38244 * 119.99916 * 2 1 4 4 C 1.38233 * 119.99944 * 180.02562 * 3 2 1 5 5 C 1.38239 * 120.00027 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.99797 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47684 * 24.99771 * 6 5 4 8 8 C 1.53003 * 109.47132 * 264.99793 * 6 5 4 9 9 O 1.45198 * 109.47243 * 144.99928 * 6 5 4 10 10 C 1.34230 * 117.00173 * 209.99687 * 9 6 5 11 11 O 1.20822 * 120.00010 * 359.97438 * 10 9 6 12 12 C 1.50706 * 119.99763 * 180.02562 * 10 9 6 13 13 S 1.81003 * 109.46853 * 179.97438 * 12 10 9 14 14 C 1.76196 * 99.99846 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.38802 * 119.99637 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99570 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47213 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46950 * 120.00258 * 18 16 14 21 21 H 1.48503 * 109.47177 * 240.00017 * 18 16 14 22 22 C 1.38238 * 119.99862 * 0.25254 * 5 4 3 23 23 C 1.38230 * 120.00069 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47314 * 90.00060 * 1 2 3 25 25 H 1.09000 * 109.47091 * 209.99806 * 1 2 3 26 26 H 1.09003 * 109.46916 * 329.99675 * 1 2 3 27 27 H 1.08001 * 119.99924 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.99954 * 179.97438 * 4 3 2 29 29 H 1.08995 * 109.46990 * 300.00259 * 8 6 5 30 30 H 1.08999 * 109.47111 * 60.00141 * 8 6 5 31 31 H 1.08999 * 109.47362 * 179.97438 * 8 6 5 32 32 H 1.09000 * 109.47318 * 299.99486 * 12 10 9 33 33 H 1.09000 * 109.47161 * 60.00117 * 12 10 9 34 34 H 0.96995 * 120.00407 * 180.02562 * 17 16 14 35 35 H 1.08003 * 119.99477 * 179.72582 * 22 5 4 36 36 H 1.07998 * 120.00177 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0001 -0.0017 7 1 6.1424 0.9317 0.4319 8 6 6.2876 -0.1263 -1.4391 9 8 6.2633 -1.1208 0.7836 10 6 7.4435 -0.9654 1.4039 11 8 8.0516 0.0728 1.2940 12 6 8.0105 -2.0863 2.2366 13 16 9.5996 -1.5742 2.9356 14 6 10.0217 -3.0298 3.8344 15 1 9.3565 -3.8806 3.8275 16 6 11.2086 -3.0825 4.5521 17 7 12.0186 -2.0450 4.5617 18 14 11.6557 -4.6254 5.5055 19 1 10.5856 -5.6406 5.3343 20 1 12.9395 -5.1689 4.9938 21 1 11.7979 -4.2934 6.9460 22 6 3.5805 -1.1971 -0.0053 23 6 2.1982 -1.1971 -0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1325 0.0004 28 1 4.1205 2.1326 -0.0010 29 1 5.9239 -1.0578 -1.8726 30 1 5.9238 0.7153 -2.0286 31 1 7.3775 -0.1258 -1.4400 32 1 7.3182 -2.3253 3.0439 33 1 8.1561 -2.9664 1.6103 34 1 12.8482 -2.0820 5.0630 35 1 4.1206 -2.1324 -0.0098 36 1 1.6582 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066873217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:35 Heat of formation + Delta-G solvation = -93.024170 kcal Electronic energy + Delta-G solvation = -18481.998778 eV Core-core repulsion = 15442.236242 eV Total energy + Delta-G solvation = -3039.762536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.72863 -40.26901 -37.77580 -34.80125 -34.61887 -32.02938 -31.86584 -30.89231 -27.73681 -27.66635 -24.47624 -23.79830 -22.33758 -21.32551 -19.93106 -18.73718 -18.00399 -17.36987 -16.90740 -16.48761 -16.29331 -16.04982 -15.66983 -15.10086 -14.67783 -14.62369 -14.43365 -14.30660 -14.13749 -13.69273 -13.27222 -13.17291 -13.03031 -12.92558 -12.78464 -12.65532 -12.57402 -12.08386 -11.80793 -11.76470 -11.71704 -11.52981 -11.18180 -10.38825 -9.86060 -9.49856 -8.74615 -8.38328 -6.18089 0.26884 0.47074 1.02652 1.11023 1.40838 1.41803 1.56050 1.87200 2.23009 2.77437 2.96791 3.24574 3.50744 3.74739 3.85997 4.04182 4.07222 4.08243 4.15304 4.17503 4.41848 4.48936 4.54711 4.66294 4.70544 4.86376 4.86647 4.92495 5.05832 5.13608 5.25898 5.28154 5.40698 5.47458 5.65076 5.68241 6.06957 6.17688 6.67423 7.03504 8.71222 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.033093 B = 0.003101 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.900823 B = 9025.732558 C = 9493.275948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.112 4.112 5 C -0.110 4.110 6 C 0.122 3.878 7 H 0.081 0.919 8 C -0.157 4.157 9 O -0.345 6.345 10 C 0.488 3.512 11 O -0.518 6.518 12 C -0.108 4.108 13 S -0.137 6.137 14 C -0.547 4.547 15 H 0.086 0.914 16 C 0.015 3.985 17 N -0.910 5.910 18 Si 1.001 2.999 19 H -0.257 1.257 20 H -0.273 1.273 21 H -0.273 1.273 22 C -0.103 4.103 23 C -0.129 4.129 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.146 0.854 28 H 0.134 0.866 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.273 0.727 35 H 0.126 0.874 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.714 2.217 -11.089 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.130 4.130 5 C -0.110 4.110 6 C 0.068 3.932 7 H 0.099 0.901 8 C -0.214 4.214 9 O -0.262 6.262 10 C 0.331 3.669 11 O -0.407 6.407 12 C -0.257 4.257 13 S 0.090 5.910 14 C -0.695 4.695 15 H 0.104 0.896 16 C -0.190 4.190 17 N -0.546 5.546 18 Si 0.822 3.178 19 H -0.180 1.180 20 H -0.198 1.198 21 H -0.199 1.199 22 C -0.121 4.121 23 C -0.147 4.147 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.164 0.836 28 H 0.152 0.848 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.848 3.609 -11.209 24.819 hybrid contribution 0.252 -1.597 0.702 1.762 sum -21.595 2.012 -10.507 24.100 Atomic orbital electron populations 1.20853 0.89092 1.03736 1.03283 1.20367 0.97726 0.92912 0.97869 1.21280 0.93382 0.98847 1.00789 1.21149 0.95097 0.97142 0.99618 1.19597 0.92303 0.95000 1.04083 1.21607 0.91215 0.88427 0.91983 0.90143 1.22146 1.01176 1.04511 0.93595 1.86537 1.35600 1.44280 1.59780 1.22994 0.79028 0.87949 0.76939 1.90644 1.59844 1.29899 1.60274 1.23091 1.01763 0.98954 1.01854 1.85522 1.18020 1.24791 1.62633 1.23222 1.09650 1.01157 1.35457 0.89634 1.26130 0.94869 1.01048 0.96927 1.70166 1.11772 1.31731 1.40963 0.84876 0.78503 0.76949 0.77440 1.18042 1.19833 1.19871 1.21132 0.94809 0.97740 0.98379 1.21316 0.93565 0.98882 1.00937 0.89996 0.90768 0.90531 0.83589 0.84815 0.90625 0.88608 0.92922 0.86250 0.85979 0.91827 0.85650 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.24 0.71 -0.43 16 2 C -0.09 -1.45 5.88 -19.87 -0.12 -1.56 16 3 C -0.13 -2.11 9.70 22.27 0.22 -1.89 16 4 C -0.11 -2.26 9.68 22.27 0.22 -2.05 16 5 C -0.11 -2.60 5.01 -19.87 -0.10 -2.70 16 6 C 0.12 3.35 2.77 29.85 0.08 3.44 16 7 H 0.08 2.41 7.07 -2.39 -0.02 2.39 16 8 C -0.16 -3.67 9.53 71.98 0.69 -2.99 16 9 O -0.34 -11.13 9.04 -51.41 -0.46 -11.59 16 10 C 0.49 19.08 7.95 71.24 0.57 19.64 16 11 O -0.52 -23.37 15.08 21.98 0.33 -23.04 16 12 C -0.11 -4.43 6.27 71.24 0.45 -3.98 16 13 S -0.14 -7.48 20.58 -56.49 -1.16 -8.64 16 14 C -0.55 -30.89 9.50 67.96 0.65 -30.24 16 15 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 16 C 0.02 0.86 5.49 84.86 0.47 1.33 16 17 N -0.91 -55.08 13.22 21.65 0.29 -54.80 16 18 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 C -0.10 -2.28 9.35 22.27 0.21 -2.08 16 23 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 24 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 0.65 8.09 -2.39 -0.02 0.64 16 26 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 27 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 28 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 33 H 0.12 4.52 8.14 -2.40 -0.02 4.50 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.13 2.79 7.63 -2.91 -0.02 2.77 16 36 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -70.35 329.65 6.33 -64.02 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.06 Total: 14.53 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 4.25 Total: -25.65 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.29 Total: -54.80 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.13 Total: -34.63 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -1.16 Total: -8.64 kcal Total: -70.35 6.33 -64.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066873217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.005 kcal (2) G-P(sol) polarization free energy of solvation -70.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds