Wall clock time and date at job start Tue Mar 31 2020 01:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38174 * 119.97062 * 2 1 4 4 C 1.38711 * 119.94106 * 179.76717 * 3 2 1 5 5 O 1.35905 * 120.05104 * 180.25607 * 4 3 2 6 6 C 1.42904 * 116.99539 * 180.23057 * 5 4 3 7 7 C 1.50699 * 109.46811 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00190 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99602 * 179.97438 * 7 6 5 10 10 C 1.37094 * 119.99753 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00022 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00384 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00399 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99421 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.46882 * 90.00144 * 14 12 10 16 16 H 1.48501 * 109.46902 * 210.00001 * 14 12 10 17 17 H 1.48493 * 109.47120 * 330.00202 * 14 12 10 18 18 C 1.38753 * 119.89074 * 0.47993 * 4 3 2 19 19 C 1.38119 * 119.94003 * 359.77263 * 18 4 3 20 20 C 1.38237 * 119.97355 * 180.26964 * 2 1 3 21 21 N 1.48004 * 119.94647 * 359.97438 * 20 2 1 22 22 O 1.21792 * 120.00477 * 173.49195 * 21 20 2 23 23 O 1.21808 * 119.99444 * 353.48371 * 21 20 2 24 24 H 1.08996 * 109.47817 * 262.78984 * 1 2 3 25 25 H 1.09009 * 109.46984 * 142.78763 * 1 2 3 26 26 H 1.09008 * 109.47277 * 22.79219 * 1 2 3 27 27 H 1.07995 * 120.02529 * 359.97438 * 3 2 1 28 28 H 1.08993 * 109.46986 * 299.99813 * 6 5 4 29 29 H 1.09004 * 109.46956 * 59.99603 * 6 5 4 30 30 H 0.96998 * 120.00498 * 0.02562 * 9 7 6 31 31 H 0.96998 * 119.99959 * 179.97438 * 13 12 10 32 32 H 1.07998 * 120.02894 * 179.74871 * 18 4 3 33 33 H 1.08005 * 119.96722 * 179.97438 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1970 0.0000 4 6 3.5843 1.1963 0.0049 5 8 4.2655 2.3723 0.0102 6 6 5.6924 2.2954 0.0099 7 6 6.2704 3.6871 0.0155 8 8 5.5330 4.6501 0.0198 9 7 7.6068 3.8617 0.0167 10 6 8.1327 5.1278 0.0223 11 1 7.4760 5.9853 0.0253 12 6 9.5104 5.3080 0.0231 13 7 10.0145 6.5216 0.0279 14 14 10.6462 3.8248 0.0171 15 1 10.9472 3.4375 -1.3845 16 1 11.9098 4.1663 0.7186 17 1 9.9845 2.6919 0.7125 18 6 4.2752 -0.0070 -0.0003 19 6 3.5805 -1.2008 -0.0056 20 6 2.1976 -1.1975 -0.0056 21 7 1.4558 -2.4782 -0.0111 22 8 2.0572 -3.5299 -0.1356 23 8 0.2436 -2.4803 0.1091 24 1 -0.3634 -0.1290 1.0195 25 1 -0.3633 -0.8185 -0.6216 26 1 -0.3634 0.9475 -0.3981 27 1 1.6572 2.1322 -0.0004 28 1 6.0275 1.7589 0.8974 29 1 6.0276 1.7666 -0.8825 30 1 8.1966 3.0917 0.0136 31 1 10.9763 6.6473 0.0288 32 1 5.3552 -0.0102 -0.0006 33 1 4.1178 -2.1377 -0.0101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076609791.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:29 Heat of formation + Delta-G solvation = -65.498732 kcal Electronic energy + Delta-G solvation = -20658.238051 eV Core-core repulsion = 17073.375893 eV Total energy + Delta-G solvation = -3584.862158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.27336 -41.64560 -40.27706 -38.79542 -37.69860 -36.12707 -33.89920 -33.85955 -32.51988 -30.21785 -28.63970 -26.74657 -26.36677 -23.82320 -22.97789 -21.52525 -20.59807 -20.01061 -19.60746 -19.26770 -18.62624 -17.81431 -17.45408 -17.19166 -16.64283 -15.81513 -15.63249 -15.48707 -14.90733 -14.66799 -14.58731 -14.53750 -14.27842 -13.85745 -13.57849 -13.35764 -13.00105 -12.48106 -12.46655 -12.34623 -12.31831 -12.20321 -11.99603 -11.69980 -11.59098 -10.61662 -10.35293 -10.25883 -9.87916 -8.46431 -6.10657 -1.14197 -0.13267 0.31456 0.44544 1.29534 1.34833 1.44114 1.56618 1.76695 2.17895 2.21131 2.90141 3.08323 3.30877 3.36550 3.50710 3.81905 3.86328 4.02721 4.10351 4.13237 4.30119 4.51520 4.63258 4.67826 4.82886 4.93345 5.05056 5.09712 5.43975 5.49418 5.83995 5.98454 6.49176 6.59516 6.77413 7.25321 7.79168 8.70432 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.037106 B = 0.003183 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.414738 B = 8793.838293 C = 9526.373808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.025 3.975 3 C -0.166 4.166 4 C 0.185 3.815 5 O -0.300 6.300 6 C 0.051 3.949 7 C 0.444 3.556 8 O -0.616 6.616 9 N -0.573 5.573 10 C -0.336 4.336 11 H 0.056 0.944 12 C -0.011 4.011 13 N -0.929 5.929 14 Si 0.965 3.035 15 H -0.255 1.255 16 H -0.277 1.277 17 H -0.222 1.222 18 C -0.209 4.209 19 C -0.002 4.002 20 C -0.110 4.110 21 N 0.042 4.958 22 O -0.199 6.199 23 O -0.174 6.174 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.161 0.839 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.396 0.604 31 H 0.282 0.718 32 H 0.185 0.815 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.189 -19.766 -0.022 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.024 3.976 3 C -0.185 4.185 4 C 0.137 3.863 5 O -0.210 6.210 6 C -0.026 4.026 7 C 0.231 3.769 8 O -0.501 6.501 9 N -0.215 5.215 10 C -0.465 4.465 11 H 0.074 0.926 12 C -0.211 4.211 13 N -0.568 5.568 14 Si 0.784 3.216 15 H -0.179 1.179 16 H -0.202 1.202 17 H -0.145 1.145 18 C -0.228 4.228 19 C -0.021 4.021 20 C -0.195 4.195 21 N 0.553 4.447 22 O -0.407 6.407 23 O -0.387 6.387 24 H 0.116 0.884 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.179 0.821 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.232 0.768 31 H 0.091 0.909 32 H 0.202 0.798 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.216 -18.206 -0.019 20.877 hybrid contribution 0.808 -0.323 0.008 0.870 sum -9.408 -18.529 -0.010 20.781 Atomic orbital electron populations 1.21377 0.87039 1.05378 1.05081 1.19747 0.98777 0.89057 0.90062 1.20494 0.91063 0.98766 1.08175 1.19675 0.92365 0.85245 0.88998 1.86233 1.20474 1.28004 1.86309 1.22703 0.77995 0.94781 1.07135 1.20353 0.82524 0.91169 0.82852 1.90609 1.59904 1.44285 1.55295 1.41764 1.05477 1.07558 1.66746 1.18978 0.92036 0.84174 1.51267 0.92610 1.26178 0.98186 1.01221 0.95465 1.69795 1.14199 1.23789 1.49055 0.85375 0.78008 0.78046 0.80179 1.17904 1.20195 1.14505 1.21598 1.03037 0.89336 1.08855 1.21028 0.90194 1.01000 0.89909 1.21011 0.93099 0.82527 1.22892 1.43678 1.01035 1.03090 0.96948 1.94513 1.70240 1.20880 1.55035 1.94448 0.96826 1.93955 1.53433 0.88434 0.88858 0.88822 0.82134 0.85193 0.85110 0.76778 0.90860 0.79803 0.80803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.67 71.23 0.62 -1.38 16 2 C 0.03 0.47 5.88 -19.88 -0.12 0.35 16 3 C -0.17 -3.27 9.61 22.37 0.22 -3.05 16 4 C 0.19 3.88 6.69 22.51 0.15 4.03 16 5 O -0.30 -8.40 9.67 -73.45 -0.71 -9.11 16 6 C 0.05 1.26 5.22 71.24 0.37 1.64 16 7 C 0.44 18.30 7.86 87.66 0.69 18.98 16 8 O -0.62 -33.25 16.07 15.98 0.26 -32.99 16 9 N -0.57 -24.33 5.09 -306.99 -1.56 -25.90 16 10 C -0.34 -18.52 10.16 84.04 0.85 -17.66 16 11 H 0.06 3.73 7.39 -2.91 -0.02 3.71 16 12 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 13 N -0.93 -53.51 13.96 21.66 0.30 -53.21 16 14 Si 0.96 35.02 27.74 68.60 1.90 36.92 16 15 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 16 H -0.28 -10.20 7.11 99.48 0.71 -9.49 16 17 H -0.22 -6.34 6.52 99.48 0.65 -5.69 16 18 C -0.21 -3.14 9.04 22.36 0.20 -2.94 16 19 C 0.00 -0.04 9.55 22.25 0.21 0.17 16 20 C -0.11 -2.22 6.83 36.39 0.25 -1.98 16 21 N 0.04 1.01 4.45 -46.44 -0.21 0.80 16 22 O -0.20 -5.05 18.46 18.90 0.35 -4.70 16 23 O -0.17 -4.20 15.35 18.88 0.29 -3.91 16 24 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.09 1.55 5.87 -2.38 -0.01 1.54 16 26 H 0.09 1.07 8.03 -2.38 -0.02 1.05 16 27 H 0.16 2.92 8.05 -2.91 -0.02 2.90 16 28 H 0.13 2.13 7.66 -2.39 -0.02 2.12 16 29 H 0.13 2.13 7.66 -2.38 -0.02 2.11 16 30 H 0.40 12.95 5.76 -92.71 -0.53 12.42 16 31 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.18 1.54 6.30 -2.91 -0.02 1.52 16 33 H 0.17 2.07 7.62 -2.91 -0.02 2.04 16 Total: -1.00 -77.61 297.34 5.12 -72.49 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.58 Total: 21.54 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 3.91 Total: -1.93 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -1.47 Total: -78.31 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: 0.19 Total: -50.71 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 1.90 Total: 36.92 kcal Total: -77.61 5.12 -72.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076609791.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.996 kcal (2) G-P(sol) polarization free energy of solvation -77.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds