Wall clock time and date at job start Tue Mar 31 2020 01:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38752 * 120.02925 * 2 1 4 4 O 1.35899 * 120.05697 * 0.02562 * 3 2 1 5 5 C 1.42905 * 116.99954 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47017 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99863 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99653 * 179.97438 * 6 5 4 9 9 C 1.37099 * 119.99949 * 179.97438 * 8 6 5 10 10 H 1.08003 * 120.00041 * 0.02562 * 9 8 6 11 11 C 1.38949 * 120.00329 * 179.97438 * 9 8 6 12 12 N 1.31409 * 120.00320 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00005 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47324 * 89.99619 * 13 11 9 15 15 H 1.48500 * 109.47188 * 209.99761 * 13 11 9 16 16 H 1.48503 * 109.46663 * 329.99756 * 13 11 9 17 17 C 1.38716 * 119.88630 * 179.97438 * 3 2 1 18 18 C 1.38167 * 119.94579 * 359.97438 * 17 3 2 19 19 C 1.38240 * 120.05503 * 0.02562 * 18 17 3 20 20 C 1.38125 * 120.02429 * 179.97438 * 2 1 3 21 21 N 1.48000 * 119.97332 * 0.02562 * 20 2 1 22 22 O 1.21800 * 120.00264 * 186.41954 * 21 20 2 23 23 O 1.21800 * 119.99979 * 6.41605 * 21 20 2 24 24 H 1.08996 * 109.47470 * 96.85322 * 1 2 3 25 25 H 1.08991 * 109.47518 * 216.86407 * 1 2 3 26 26 H 1.09010 * 109.46620 * 336.85891 * 1 2 3 27 27 H 1.09003 * 109.46761 * 300.00148 * 5 4 3 28 28 H 1.08998 * 109.46977 * 59.99908 * 5 4 3 29 29 H 0.97000 * 120.00475 * 0.02562 * 8 6 5 30 30 H 0.96997 * 120.00599 * 180.02562 * 12 11 9 31 31 H 1.08003 * 120.02520 * 180.02562 * 17 3 2 32 32 H 1.07994 * 119.97240 * 179.97438 * 18 17 3 33 33 H 1.07997 * 119.95096 * 179.71956 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2013 0.0000 4 8 1.5236 2.3792 0.0005 5 6 2.3038 3.5765 0.0011 6 6 1.3876 4.7730 0.0010 7 8 0.1849 4.6159 0.0009 8 7 1.9046 6.0176 0.0019 9 6 1.0711 7.1062 0.0013 10 1 0.0002 6.9663 0.0005 11 6 1.6041 8.3894 0.0028 12 7 0.8053 9.4327 0.0028 13 14 3.4564 8.6314 0.0050 14 1 3.9488 8.6964 -1.3944 15 1 3.7894 9.8973 0.7063 16 1 4.1034 7.4926 0.7050 17 6 3.5885 1.1978 0.0005 18 6 4.2752 -0.0011 0.0016 19 6 3.5811 -1.1966 0.0016 20 6 2.1981 -1.1959 0.0005 21 7 1.4581 -2.4776 0.0005 22 8 2.0612 -3.5291 0.1189 23 8 0.2458 -2.4809 -0.1178 24 1 -0.3634 -0.1226 -1.0203 25 1 -0.3634 -0.8221 0.6164 26 1 -0.3633 0.9451 0.4039 27 1 2.9326 3.6000 0.8911 28 1 2.9326 3.6008 -0.8889 29 1 2.8664 6.1433 0.0023 30 1 1.1773 10.3285 0.0035 31 1 4.1313 2.1316 0.0010 32 1 5.3552 -0.0043 0.0016 33 1 4.1195 -2.1327 -0.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076610456.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:40 Heat of formation + Delta-G solvation = -39.841003 kcal Electronic energy + Delta-G solvation = -20957.402582 eV Core-core repulsion = 17373.653026 eV Total energy + Delta-G solvation = -3583.749556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.39458 -40.65434 -38.72812 -37.41876 -36.78667 -34.20967 -33.37522 -31.92405 -31.31578 -28.68816 -27.80472 -26.06391 -24.65175 -22.46955 -22.33095 -19.89363 -19.38155 -18.88676 -18.48865 -17.73465 -17.41378 -16.55210 -16.31173 -16.20089 -15.50788 -15.04530 -14.25605 -14.21821 -13.81879 -13.25413 -13.21767 -12.94284 -12.82209 -12.47102 -12.36361 -12.32076 -11.69659 -11.48915 -11.44205 -11.24280 -11.21640 -10.76442 -10.69372 -10.15533 -9.79573 -9.75769 -8.80856 -8.65426 -8.40749 -6.49043 -4.02773 -0.34406 0.73292 1.17515 1.20333 2.73785 2.86372 2.92279 2.99551 3.02987 3.40079 3.93154 4.10100 4.24789 4.29135 4.50898 4.51334 4.67372 4.92715 4.95489 5.06463 5.28350 5.29694 5.49637 5.54580 5.61830 5.68158 5.80216 5.89692 6.05017 6.42060 6.95227 7.35754 7.54060 7.89320 8.36070 8.73256 9.18212 9.52553 10.63151 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.038234 B = 0.003451 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.153698 B = 8111.394508 C = 8821.716467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.046 4.046 3 C 0.137 3.863 4 O -0.268 6.268 5 C 0.045 3.955 6 C 0.446 3.554 7 O -0.553 6.553 8 N -0.577 5.577 9 C -0.311 4.311 10 H 0.123 0.877 11 C 0.046 3.954 12 N -0.872 5.872 13 Si 0.880 3.120 14 H -0.269 1.269 15 H -0.274 1.274 16 H -0.269 1.269 17 C -0.162 4.162 18 C -0.083 4.083 19 C -0.099 4.099 20 C -0.014 4.014 21 N 0.033 4.967 22 O -0.169 6.169 23 O -0.151 6.151 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.372 0.628 30 H 0.277 0.723 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.089 -16.849 -0.017 20.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.048 4.048 3 C 0.089 3.911 4 O -0.179 6.179 5 C -0.034 4.034 6 C 0.231 3.769 7 O -0.434 6.434 8 N -0.217 5.217 9 C -0.439 4.439 10 H 0.140 0.860 11 C -0.158 4.158 12 N -0.511 5.511 13 Si 0.706 3.294 14 H -0.194 1.194 15 H -0.199 1.199 16 H -0.195 1.195 17 C -0.180 4.180 18 C -0.102 4.102 19 C -0.118 4.118 20 C -0.097 4.097 21 N 0.550 4.450 22 O -0.382 6.382 23 O -0.367 6.367 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.205 0.795 30 H 0.087 0.913 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.365 -16.057 -0.014 19.112 hybrid contribution 1.690 0.214 0.002 1.704 sum 12.055 -15.843 -0.012 19.908 Atomic orbital electron populations 1.21172 0.87563 1.05188 1.04408 1.19045 0.98722 0.88193 0.98850 1.18600 0.90041 0.86387 0.96048 1.86251 1.33883 1.10813 1.86973 1.22685 0.94529 0.83612 1.02587 1.19037 0.88847 0.83027 0.86005 1.90630 1.14629 1.84843 1.53321 1.42011 1.08103 1.05130 1.66443 1.19431 0.93243 0.82296 1.48910 0.85958 1.25049 0.98551 0.95054 0.97192 1.69605 1.35034 0.98533 1.47902 0.86669 0.84765 0.78893 0.79046 1.19382 1.19865 1.19490 1.21789 0.93039 1.00611 1.02607 1.20909 1.00751 0.90185 0.98337 1.20878 0.90701 1.00787 0.99430 1.20576 0.92067 0.82879 1.14224 1.43484 1.01157 1.02592 0.97731 1.94523 1.70181 1.19874 1.53620 1.94505 0.96102 1.93761 1.52324 0.89436 0.88734 0.89482 0.89876 0.89859 0.79476 0.91261 0.83382 0.83365 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 8.53 36.01 0.31 -1.35 16 2 C -0.05 -0.60 5.89 -104.47 -0.62 -1.21 16 3 C 0.14 1.75 6.66 -39.21 -0.26 1.49 16 4 O -0.27 -4.24 8.61 -39.33 -0.34 -4.58 16 5 C 0.04 0.65 5.22 36.01 0.19 0.84 16 6 C 0.45 9.50 7.86 -10.99 -0.09 9.41 16 7 O -0.55 -14.53 16.07 -14.36 -0.23 -14.76 16 8 N -0.58 -12.67 5.09 -10.96 -0.06 -12.73 16 9 C -0.31 -8.32 10.16 -14.93 -0.15 -8.47 16 10 H 0.12 3.78 7.39 -52.48 -0.39 3.40 16 11 C 0.05 1.19 5.50 -17.47 -0.10 1.09 16 12 N -0.87 -24.29 13.96 55.50 0.77 -23.51 16 13 Si 0.88 17.90 27.74 -169.99 -4.71 13.18 16 14 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 16 H -0.27 -4.85 6.52 56.52 0.37 -4.49 16 17 C -0.16 -1.51 9.04 -39.43 -0.36 -1.87 16 18 C -0.08 -0.64 10.04 -39.61 -0.40 -1.04 16 19 C -0.10 -0.92 9.55 -39.56 -0.38 -1.30 16 20 C -0.01 -0.17 6.83 -79.98 -0.55 -0.72 16 21 N 0.03 0.45 4.45 33.95 0.15 0.60 16 22 O -0.17 -2.30 18.46 -29.46 -0.54 -2.84 16 23 O -0.15 -2.12 15.36 -29.46 -0.45 -2.58 16 24 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.09 1.19 5.86 -51.93 -0.30 0.88 16 26 H 0.09 1.24 7.33 -51.92 -0.38 0.86 16 27 H 0.08 0.95 7.66 -51.93 -0.40 0.55 16 28 H 0.08 0.95 7.66 -51.93 -0.40 0.55 16 29 H 0.37 6.88 5.76 -40.82 -0.24 6.64 16 30 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.15 1.04 6.30 -52.48 -0.33 0.71 16 32 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.15 1.14 7.62 -52.49 -0.40 0.74 16 LS Contribution 295.85 15.07 4.46 4.46 Total: -1.00 -32.38 295.85 -6.19 -38.57 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -2.85 Total: 7.31 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.39 Total: -3.12 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.87 Total: -35.64 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -1.57 Total: -24.75 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -4.71 Total: 13.18 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.38 -6.19 -38.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076610456.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.270 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds