Wall clock time and date at job start Tue Mar 31 2020 01:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38752 * 120.02925 * 2 1 4 4 O 1.35899 * 120.05697 * 0.02562 * 3 2 1 5 5 C 1.42905 * 116.99954 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47017 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99863 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99653 * 179.97438 * 6 5 4 9 9 C 1.37099 * 119.99949 * 179.97438 * 8 6 5 10 10 H 1.08003 * 120.00041 * 0.02562 * 9 8 6 11 11 C 1.38949 * 120.00329 * 179.97438 * 9 8 6 12 12 N 1.31409 * 120.00320 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00005 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47324 * 89.99619 * 13 11 9 15 15 H 1.48500 * 109.47188 * 209.99761 * 13 11 9 16 16 H 1.48503 * 109.46663 * 329.99756 * 13 11 9 17 17 C 1.38716 * 119.88630 * 179.97438 * 3 2 1 18 18 C 1.38167 * 119.94579 * 359.97438 * 17 3 2 19 19 C 1.38240 * 120.05503 * 0.02562 * 18 17 3 20 20 C 1.38125 * 120.02429 * 179.97438 * 2 1 3 21 21 N 1.48000 * 119.97332 * 0.02562 * 20 2 1 22 22 O 1.21800 * 120.00264 * 186.41954 * 21 20 2 23 23 O 1.21800 * 119.99979 * 6.41605 * 21 20 2 24 24 H 1.08996 * 109.47470 * 96.85322 * 1 2 3 25 25 H 1.08991 * 109.47518 * 216.86407 * 1 2 3 26 26 H 1.09010 * 109.46620 * 336.85891 * 1 2 3 27 27 H 1.09003 * 109.46761 * 300.00148 * 5 4 3 28 28 H 1.08998 * 109.46977 * 59.99908 * 5 4 3 29 29 H 0.97000 * 120.00475 * 0.02562 * 8 6 5 30 30 H 0.96997 * 120.00599 * 180.02562 * 12 11 9 31 31 H 1.08003 * 120.02520 * 180.02562 * 17 3 2 32 32 H 1.07994 * 119.97240 * 179.97438 * 18 17 3 33 33 H 1.07997 * 119.95096 * 179.71956 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2013 0.0000 4 8 1.5236 2.3792 0.0005 5 6 2.3038 3.5765 0.0011 6 6 1.3876 4.7730 0.0010 7 8 0.1849 4.6159 0.0009 8 7 1.9046 6.0176 0.0019 9 6 1.0711 7.1062 0.0013 10 1 0.0002 6.9663 0.0005 11 6 1.6041 8.3894 0.0028 12 7 0.8053 9.4327 0.0028 13 14 3.4564 8.6314 0.0050 14 1 3.9488 8.6964 -1.3944 15 1 3.7894 9.8973 0.7063 16 1 4.1034 7.4926 0.7050 17 6 3.5885 1.1978 0.0005 18 6 4.2752 -0.0011 0.0016 19 6 3.5811 -1.1966 0.0016 20 6 2.1981 -1.1959 0.0005 21 7 1.4581 -2.4776 0.0005 22 8 2.0612 -3.5291 0.1189 23 8 0.2458 -2.4809 -0.1178 24 1 -0.3634 -0.1226 -1.0203 25 1 -0.3634 -0.8221 0.6164 26 1 -0.3633 0.9451 0.4039 27 1 2.9326 3.6000 0.8911 28 1 2.9326 3.6008 -0.8889 29 1 2.8664 6.1433 0.0023 30 1 1.1773 10.3285 0.0035 31 1 4.1313 2.1316 0.0010 32 1 5.3552 -0.0043 0.0016 33 1 4.1195 -2.1327 -0.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076610456.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:39 Heat of formation + Delta-G solvation = -62.045748 kcal Electronic energy + Delta-G solvation = -20958.365452 eV Core-core repulsion = 17373.653026 eV Total energy + Delta-G solvation = -3584.712426 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.36621 -41.62944 -40.25405 -38.55792 -37.80103 -36.11284 -34.21734 -33.86182 -32.22516 -30.00284 -28.70282 -27.10892 -26.33127 -23.46716 -23.17060 -21.55363 -20.70069 -20.15371 -19.67063 -18.72482 -18.49938 -17.72384 -17.40949 -17.13216 -16.90308 -16.57807 -15.53589 -15.51007 -14.86358 -14.66405 -14.52327 -14.27136 -14.07433 -13.85777 -13.39068 -13.21110 -13.01221 -12.71273 -12.46029 -12.40273 -12.30305 -12.26461 -11.98717 -11.70017 -11.58094 -10.59443 -10.52345 -10.34410 -9.52785 -8.45671 -6.10089 -1.26582 -0.03194 0.26494 0.29401 1.29638 1.35617 1.45646 1.67838 1.78462 2.22049 2.23555 2.93640 3.08973 3.33542 3.49105 3.63977 3.70861 3.91873 4.01032 4.10782 4.16526 4.22063 4.47500 4.55711 4.82674 4.94139 4.96732 5.00479 5.13460 5.43166 5.48310 5.84924 6.06227 6.49920 6.50752 6.78454 7.26378 7.81228 8.71426 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.038234 B = 0.003451 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.153698 B = 8111.394508 C = 8821.716467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.072 4.072 3 C 0.115 3.885 4 O -0.307 6.307 5 C 0.056 3.944 6 C 0.443 3.557 7 O -0.617 6.617 8 N -0.573 5.573 9 C -0.337 4.337 10 H 0.053 0.947 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.967 3.033 14 H -0.254 1.254 15 H -0.277 1.277 16 H -0.221 1.221 17 C -0.143 4.143 18 C -0.064 4.064 19 C -0.088 4.088 20 C -0.029 4.029 21 N 0.033 4.967 22 O -0.162 6.162 23 O -0.189 6.189 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.396 0.604 30 H 0.282 0.718 31 H 0.185 0.815 32 H 0.199 0.801 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.153 -17.959 0.041 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.074 4.074 3 C 0.068 3.932 4 O -0.220 6.220 5 C -0.022 4.022 6 C 0.230 3.770 7 O -0.502 6.502 8 N -0.216 5.216 9 C -0.465 4.465 10 H 0.072 0.928 11 C -0.212 4.212 12 N -0.570 5.570 13 Si 0.786 3.214 14 H -0.178 1.178 15 H -0.202 1.202 16 H -0.144 1.144 17 C -0.162 4.162 18 C -0.082 4.082 19 C -0.107 4.107 20 C -0.113 4.113 21 N 0.546 4.454 22 O -0.379 6.379 23 O -0.397 6.397 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.233 0.767 30 H 0.091 0.909 31 H 0.202 0.798 32 H 0.216 0.784 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 16.386 -17.191 0.039 23.750 hybrid contribution -0.220 0.464 -0.014 0.514 sum 16.167 -16.727 0.025 23.263 Atomic orbital electron populations 1.21018 0.89135 1.03687 1.03931 1.19038 0.98151 0.89304 1.00894 1.18731 0.91577 0.84777 0.98131 1.86186 1.35692 1.11977 1.88146 1.22628 0.92486 0.80242 1.06837 1.20415 0.89138 0.84661 0.82743 1.90610 1.18214 1.86139 1.55189 1.41744 1.08644 1.04284 1.66883 1.18977 0.91318 0.84932 1.51317 0.92840 1.26211 1.05925 0.93605 0.95440 1.69800 1.38609 0.99456 1.49120 0.85347 0.75656 0.80194 0.80205 1.17843 1.20206 1.14351 1.22245 0.91180 1.02931 0.99795 1.21485 1.02855 0.88426 0.95401 1.21367 0.89254 1.02833 0.97261 1.20752 0.93074 0.81484 1.15992 1.43776 1.01138 1.03204 0.97260 1.94483 1.69962 1.20654 1.52815 1.94513 0.96849 1.94064 1.54280 0.89983 0.88951 0.91737 0.85367 0.85281 0.76747 0.90872 0.79831 0.78444 0.80873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.44 8.53 71.24 0.61 -2.83 16 2 C -0.07 -1.82 5.89 -19.77 -0.12 -1.94 16 3 C 0.11 2.63 6.66 22.51 0.15 2.78 16 4 O -0.31 -9.32 8.61 -73.38 -0.63 -9.95 16 5 C 0.06 1.41 5.22 71.24 0.37 1.79 16 6 C 0.44 18.71 7.86 87.66 0.69 19.40 16 7 O -0.62 -34.21 16.07 15.99 0.26 -33.95 16 8 N -0.57 -24.63 5.09 -306.99 -1.56 -26.19 16 9 C -0.34 -18.80 10.16 84.04 0.85 -17.94 16 10 H 0.05 3.64 7.39 -2.91 -0.02 3.61 16 11 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 12 N -0.93 -54.03 13.96 21.66 0.30 -53.72 16 13 Si 0.97 35.00 27.74 68.60 1.90 36.90 16 14 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 15 H -0.28 -10.16 7.11 99.48 0.71 -9.46 16 16 H -0.22 -6.22 6.52 99.48 0.65 -5.57 16 17 C -0.14 -1.82 9.04 22.37 0.20 -1.61 16 18 C -0.06 -0.55 10.04 22.25 0.22 -0.33 16 19 C -0.09 -1.24 9.55 22.28 0.21 -1.03 16 20 C -0.03 -0.66 6.83 36.37 0.25 -0.41 16 21 N 0.03 0.87 4.45 -46.51 -0.21 0.67 16 22 O -0.16 -4.20 18.46 18.89 0.35 -3.86 16 23 O -0.19 -5.59 15.36 18.89 0.29 -5.30 16 24 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.09 2.56 5.86 -2.39 -0.01 2.55 16 26 H 0.06 2.05 7.33 -2.38 -0.02 2.04 16 27 H 0.13 2.14 7.66 -2.39 -0.02 2.12 16 28 H 0.13 2.13 7.66 -2.39 -0.02 2.11 16 29 H 0.40 13.01 5.76 -92.71 -0.53 12.47 16 30 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.18 1.02 6.30 -2.91 -0.02 1.00 16 32 H 0.20 -0.08 8.06 -2.91 -0.02 -0.11 16 33 H 0.17 1.71 7.62 -2.91 -0.02 1.69 16 Total: -1.00 -82.03 295.85 5.19 -76.83 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.58 Total: 20.89 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 3.91 Total: -2.32 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -1.47 Total: -79.25 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: 0.26 Total: -53.05 kcal Atomic # 14 Polarization: 35.00 SS G_CDS: 1.90 Total: 36.90 kcal Total: -82.03 5.19 -76.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076610456.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.786 kcal (2) G-P(sol) polarization free energy of solvation -82.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds