Wall clock time and date at job start Tue Mar 31 2020 01:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00133 * 2 1 4 4 H 1.48499 * 109.47418 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46834 * 300.00421 * 3 2 1 6 6 H 1.48502 * 109.46937 * 60.00193 * 3 2 1 7 7 C 1.37877 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00440 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47030 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.46657 * 179.97438 * 10 9 7 12 12 C 1.81397 * 102.99649 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47007 * 179.97438 * 12 11 10 14 14 O 1.20824 * 120.00006 * 359.97438 * 13 12 11 15 15 O 1.34236 * 120.00349 * 180.02562 * 13 12 11 16 16 C 1.45190 * 117.00184 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47131 * 179.97438 * 16 15 13 18 18 C 1.38238 * 119.99792 * 90.00017 * 17 16 15 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97954 * 17 16 15 23 23 H 0.96999 * 120.00148 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47032 * 59.99140 * 9 7 2 25 25 H 1.09004 * 109.46418 * 299.99638 * 9 7 2 26 26 H 1.08989 * 109.47519 * 59.99652 * 10 9 7 27 27 H 1.09000 * 109.46640 * 299.99063 * 10 9 7 28 28 H 1.09009 * 109.47218 * 59.99952 * 12 11 10 29 29 H 1.08999 * 109.47337 * 299.99714 * 12 11 10 30 30 H 1.09005 * 109.47695 * 60.00175 * 16 15 13 31 31 H 1.09000 * 109.47342 * 299.99412 * 16 15 13 32 32 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 33 33 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 36 36 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6621 -0.0015 11 16 1.3383 -5.2331 -0.0021 12 6 2.6650 -6.4701 -0.0025 13 6 2.0634 -7.8518 -0.0024 14 8 0.8629 -7.9880 -0.0016 15 8 2.8613 -8.9313 -0.0022 16 6 2.2128 -10.2304 -0.0027 17 6 3.2597 -11.3145 -0.0029 18 6 3.7396 -11.8120 1.1942 19 6 4.6995 -12.8068 1.1939 20 6 5.1789 -13.3044 -0.0033 21 6 4.7029 -12.8031 -1.2004 22 6 3.7396 -11.8116 -1.2002 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8918 25 1 0.6241 -2.5575 0.8881 26 1 2.8713 -3.6047 0.8889 27 1 2.8726 -3.6039 -0.8910 28 1 3.2812 -6.3424 0.8876 29 1 3.2812 -6.3418 -0.8924 30 1 1.5912 -10.3259 -0.8930 31 1 1.5904 -10.3261 0.8870 32 1 3.3647 -11.4236 2.1296 33 1 5.0748 -13.1953 2.1291 34 1 5.9286 -14.0819 -0.0034 35 1 5.0806 -13.1887 -2.1358 36 1 3.3641 -11.4233 -2.1354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082693242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:22 Heat of formation + Delta-G solvation = -71.414832 kcal Electronic energy + Delta-G solvation = -17686.706147 eV Core-core repulsion = 14647.880661 eV Total energy + Delta-G solvation = -3038.825485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60474 -39.42740 -36.59596 -33.70090 -32.61553 -31.30604 -30.90916 -30.35495 -26.71217 -25.26786 -22.99056 -22.08698 -21.48676 -20.88904 -17.79226 -17.45471 -16.81932 -16.57129 -16.39442 -15.47509 -15.40575 -15.15879 -14.50565 -14.16647 -13.80559 -13.68775 -13.43223 -13.37158 -13.07662 -12.57910 -12.50012 -12.02709 -11.56868 -11.49061 -11.47015 -11.05274 -10.85022 -10.61246 -10.59319 -10.23065 -9.68427 -9.58855 -9.31599 -9.26006 -9.06157 -8.43566 -7.21396 -6.06936 -4.11776 0.76541 1.00877 1.70846 2.13497 2.72625 3.11107 3.27922 3.35553 3.39026 3.48530 4.25538 4.40521 4.40958 4.59075 4.72399 4.75910 4.83981 4.99527 5.08194 5.13785 5.24378 5.25478 5.28677 5.54521 5.63525 5.94368 6.02190 6.10444 6.12163 6.16324 6.23295 6.56728 6.68872 7.55343 7.63049 7.64852 7.89049 8.25558 8.93352 9.52212 11.03858 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.048267 B = 0.002300 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.968639 B =12172.164395 C =12431.738390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.073 4.073 11 S -0.213 6.213 12 C -0.107 4.107 13 C 0.479 3.521 14 O -0.482 6.482 15 O -0.351 6.351 16 C 0.108 3.892 17 C -0.096 4.096 18 C -0.095 4.095 19 C -0.124 4.124 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.095 4.095 23 H 0.262 0.738 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.284 -26.152 -0.009 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.221 4.221 11 S 0.013 5.987 12 C -0.255 4.255 13 C 0.320 3.680 14 O -0.368 6.368 15 O -0.269 6.269 16 C 0.035 3.965 17 C -0.096 4.096 18 C -0.113 4.113 19 C -0.142 4.142 20 C -0.129 4.129 21 C -0.142 4.142 22 C -0.113 4.113 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.663 -26.319 -0.009 27.708 hybrid contribution 1.722 1.030 -0.001 2.006 sum 10.384 -25.290 -0.009 27.339 Atomic orbital electron populations 1.69981 1.06073 1.26807 1.49940 1.25026 0.94915 0.99356 0.95059 0.86452 0.79964 0.83393 0.77677 1.19694 1.20898 1.20893 1.21116 0.93033 0.90123 1.51787 0.92330 1.18903 0.93420 0.89086 0.98744 1.23858 1.01985 0.92830 1.03471 1.87602 1.12526 1.00436 1.98105 1.23067 1.03240 0.91214 1.08026 1.22807 0.85801 0.86377 0.73018 1.90722 1.15750 1.86572 1.43733 1.86555 1.41236 1.14673 1.84476 1.21821 0.92955 0.78027 1.03733 1.19541 0.99056 0.97110 0.93929 1.21133 0.96288 0.96274 0.97574 1.21177 0.97390 0.97242 0.98372 1.21254 0.99462 0.99588 0.92605 1.21178 0.97367 0.97259 0.98374 1.21132 0.96259 0.96308 0.97571 0.92791 0.95376 0.95381 0.91074 0.91074 0.86457 0.86456 0.90068 0.90061 0.85658 0.85683 0.85848 0.85681 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 10 C -0.07 -1.50 5.88 37.16 0.22 -1.28 16 11 S -0.21 -4.05 20.88 -107.50 -2.24 -6.29 16 12 C -0.11 -1.48 6.54 36.00 0.24 -1.25 16 13 C 0.48 6.92 7.98 36.00 0.29 7.21 16 14 O -0.48 -8.43 15.61 -18.75 -0.29 -8.72 16 15 O -0.35 -4.35 10.20 -39.27 -0.40 -4.75 16 16 C 0.11 1.12 5.59 36.01 0.20 1.32 16 17 C -0.10 -0.89 5.52 -104.62 -0.58 -1.47 16 18 C -0.09 -0.79 9.70 -39.58 -0.38 -1.17 16 19 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 20 C -0.11 -0.75 10.05 -39.58 -0.40 -1.15 16 21 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 22 C -0.09 -0.79 9.70 -39.58 -0.38 -1.17 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 28 H 0.12 1.38 8.14 -51.92 -0.42 0.96 16 29 H 0.12 1.38 8.14 -51.92 -0.42 0.96 16 30 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 332.78 15.07 5.01 5.01 Total: -1.00 -32.28 332.78 -9.38 -41.66 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -5.03 Total: -3.44 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -2.15 Total: -13.89 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.69 Total: -13.48 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -4.05 SS G_CDS: -2.24 Total: -6.29 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.28 -9.38 -41.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082693242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.751 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds