Wall clock time and date at job start Tue Mar 31 2020 01:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76199 * 103.00071 * 2 1 4 4 N 1.31073 * 126.34805 * 0.02601 * 3 2 1 5 5 N 1.39868 * 109.75030 * 180.02562 * 4 3 2 6 6 C 1.46500 * 125.27559 * 179.97438 * 5 4 3 7 7 C 1.35678 * 109.45190 * 359.97438 * 5 4 3 8 8 N 1.34390 * 133.94355 * 180.02562 * 7 5 4 9 9 C 1.30247 * 121.26526 * 179.22150 * 8 7 5 10 10 N 1.35769 * 122.41869 * 0.64482 * 9 8 7 11 11 C 1.46496 * 119.83475 * 179.60335 * 10 9 8 12 12 C 1.50703 * 109.47628 * 269.98338 * 11 10 9 13 13 H 1.08002 * 119.99688 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00167 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00443 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99730 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47308 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47257 * 120.00098 * 16 14 12 19 19 H 1.48500 * 109.47103 * 240.00077 * 16 14 12 20 20 C 1.35242 * 120.33912 * 359.58760 * 10 9 8 21 21 O 1.21856 * 120.96336 * 179.97438 * 20 10 9 22 22 C 1.40380 * 106.92780 * 359.73182 * 7 5 4 23 23 H 1.08998 * 109.47085 * 299.99567 * 1 2 3 24 24 H 1.09000 * 109.46946 * 60.00083 * 1 2 3 25 25 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47337 * 90.02099 * 6 5 4 27 27 H 1.09003 * 109.47017 * 210.02456 * 6 5 4 28 28 H 1.09003 * 109.46968 * 330.01661 * 6 5 4 29 29 H 1.08000 * 118.79009 * 180.21149 * 9 8 7 30 30 H 1.09010 * 109.46972 * 29.98202 * 11 10 9 31 31 H 1.09001 * 109.47390 * 149.97816 * 11 10 9 32 32 H 0.96997 * 119.99939 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 7 1.3565 2.7113 0.0005 5 7 2.0473 3.9274 -0.0003 6 6 1.4253 5.2538 -0.0006 7 6 3.3829 3.6884 -0.0007 8 7 4.4714 4.4766 -0.0010 9 6 5.6718 3.9715 0.0137 10 7 5.8981 2.6328 0.0172 11 6 7.2726 2.1260 0.0253 12 6 7.7513 1.9493 -1.3928 13 1 7.0969 2.1900 -2.2175 14 6 9.0246 1.4804 -1.6372 15 7 9.8217 1.1878 -0.6329 16 14 9.6176 1.2608 -3.3949 17 1 8.5381 1.6567 -4.3346 18 1 10.8118 2.1130 -3.6247 19 1 9.9740 -0.1627 -3.6228 20 6 4.8612 1.7646 0.0137 21 8 5.0512 0.5610 0.0163 22 6 3.5486 2.2944 0.0061 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.2717 5.5834 1.0270 27 1 2.0764 5.9604 -0.5154 28 1 0.4649 5.2046 -0.5138 29 1 6.5183 4.6421 0.0163 30 1 7.9188 2.8365 0.5410 31 1 7.3031 1.1664 0.5413 32 1 10.7174 0.8576 -0.8050 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095398376.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:04 Heat of formation + Delta-G solvation = 70.453178 kcal Electronic energy + Delta-G solvation = -19300.007834 eV Core-core repulsion = 16196.086615 eV Total energy + Delta-G solvation = -3103.921219 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.60168 -39.37398 -36.79656 -34.27802 -33.17484 -32.44786 -29.78075 -28.77083 -27.96324 -26.71289 -24.10452 -23.96630 -22.01652 -20.87588 -18.50533 -17.66141 -16.93212 -16.53016 -15.92260 -15.80282 -15.03623 -14.56445 -14.37611 -14.12185 -13.93227 -13.67584 -13.55599 -12.77991 -12.74091 -12.63016 -12.47618 -12.23553 -11.72738 -11.24648 -11.04777 -10.87784 -10.41564 -10.36777 -10.31805 -9.69525 -9.62527 -9.36055 -8.88421 -8.65178 -7.91102 -7.41515 -6.27978 -4.35314 1.10049 1.38612 1.94836 2.08966 2.64915 2.69239 3.20858 3.27780 3.30093 3.38411 4.15041 4.27469 4.30795 4.64854 4.97563 5.09505 5.10746 5.12093 5.15158 5.16936 5.35034 5.42594 5.58981 5.69376 6.11429 6.58786 6.62060 7.01891 7.11336 7.37381 7.49717 7.66456 7.84620 8.20883 8.56370 8.69299 9.31773 10.80700 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020488 B = 0.005382 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.328343 B = 5201.032581 C = 6029.735451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 S 0.023 5.977 3 C 0.132 3.868 4 N -0.288 5.288 5 N -0.368 5.368 6 C 0.110 3.890 7 C 0.362 3.638 8 N -0.568 5.568 9 C 0.433 3.567 10 N -0.515 5.515 11 C 0.223 3.777 12 C -0.540 4.540 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.887 5.887 16 Si 0.905 3.095 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.280 1.280 20 C 0.566 3.434 21 O -0.508 6.508 22 C -0.335 4.335 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.212 0.788 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.475 6.222 2.338 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 S 0.252 5.748 3 C -0.150 4.150 4 N -0.112 5.112 5 N -0.154 5.154 6 C -0.031 4.031 7 C 0.125 3.875 8 N -0.300 5.300 9 C 0.145 3.855 10 N -0.231 5.231 11 C 0.104 3.896 12 C -0.578 4.578 13 H 0.081 0.919 14 C -0.135 4.135 15 N -0.525 5.525 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.361 3.639 21 O -0.382 6.382 22 C -0.355 4.355 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.125 0.875 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.228 0.772 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.059 5.605 2.384 16.244 hybrid contribution 0.438 0.211 -0.958 1.074 sum -14.621 5.815 1.426 15.799 Atomic orbital electron populations 1.23674 0.96855 1.06506 1.06154 1.86241 1.03383 0.93634 1.91497 1.24800 0.92304 0.98594 0.99270 1.77311 1.17900 0.87719 1.28301 1.47789 1.00790 1.05912 1.60908 1.21835 0.99415 0.78681 1.03212 1.19065 0.86264 0.89793 0.92405 1.67602 0.95410 1.35639 1.31309 1.24890 0.94258 0.84063 0.82321 1.47339 1.12710 1.06435 1.56655 1.19976 0.72208 0.97695 0.99686 1.21253 0.99175 1.46411 0.90998 0.91893 1.24890 0.96213 0.94337 0.98028 1.69919 1.08346 1.43359 1.30839 0.86322 0.78630 0.78155 0.83697 1.19627 1.20644 1.20579 1.16019 0.83069 0.86723 0.78059 1.90874 1.85150 1.13257 1.48925 1.20610 0.93424 0.92759 1.28675 0.89789 0.89765 0.87480 0.91034 0.88940 0.89627 0.77168 0.92802 0.91866 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 10.41 101.05 1.05 -0.73 16 2 S 0.02 0.37 22.62 -107.50 -2.43 -2.06 16 3 C 0.13 2.47 7.53 -14.87 -0.11 2.36 16 4 N -0.29 -4.93 12.04 32.59 0.39 -4.54 16 5 N -0.37 -5.92 4.00 -67.26 -0.27 -6.19 16 6 C 0.11 1.17 11.42 59.85 0.68 1.85 16 7 C 0.36 6.66 7.97 -155.95 -1.24 5.42 16 8 N -0.57 -9.62 10.43 -13.40 -0.14 -9.76 16 9 C 0.43 7.29 11.46 -89.92 -1.03 6.26 16 10 N -0.52 -10.86 2.58 -122.00 -0.32 -11.18 16 11 C 0.22 5.29 5.12 -5.19 -0.03 5.27 16 12 C -0.54 -14.24 9.38 -34.44 -0.32 -14.56 16 13 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 14 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 15 N -0.89 -24.46 13.29 55.43 0.74 -23.73 16 16 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.57 13.07 7.48 -14.79 -0.11 12.96 16 21 O -0.51 -13.27 16.62 5.05 0.08 -13.19 16 22 C -0.34 -6.98 6.35 -104.83 -0.67 -7.65 16 23 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 24 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 25 H 0.11 0.89 8.14 -51.92 -0.42 0.47 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.21 2.65 8.01 -52.49 -0.42 2.22 16 30 H 0.05 1.20 8.01 -51.92 -0.42 0.78 16 31 H 0.06 1.70 7.45 -51.93 -0.39 1.31 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 303.47 15.07 4.57 4.57 Total: -1.00 -32.91 303.47 -7.57 -40.48 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -3.30 Total: -3.12 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: -1.87 Total: 12.93 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.40 Total: -55.39 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -2.43 Total: -2.06 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.91 -7.57 -40.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095398376.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.935 kcal (2) G-P(sol) polarization free energy of solvation -32.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds