Wall clock time and date at job start Tue Mar 31 2020 01:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76199 * 103.00071 * 2 1 4 4 N 1.31073 * 126.34805 * 0.02601 * 3 2 1 5 5 N 1.39868 * 109.75030 * 180.02562 * 4 3 2 6 6 C 1.46500 * 125.27559 * 179.97438 * 5 4 3 7 7 C 1.35678 * 109.45190 * 359.97438 * 5 4 3 8 8 N 1.34390 * 133.94355 * 180.02562 * 7 5 4 9 9 C 1.30247 * 121.26526 * 179.22150 * 8 7 5 10 10 N 1.35769 * 122.41869 * 0.64482 * 9 8 7 11 11 C 1.46496 * 119.83475 * 179.60335 * 10 9 8 12 12 C 1.50703 * 109.47628 * 269.98338 * 11 10 9 13 13 H 1.08002 * 119.99688 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00167 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00443 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99730 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47308 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47257 * 120.00098 * 16 14 12 19 19 H 1.48500 * 109.47103 * 240.00077 * 16 14 12 20 20 C 1.35242 * 120.33912 * 359.58760 * 10 9 8 21 21 O 1.21856 * 120.96336 * 179.97438 * 20 10 9 22 22 C 1.40380 * 106.92780 * 359.73182 * 7 5 4 23 23 H 1.08998 * 109.47085 * 299.99567 * 1 2 3 24 24 H 1.09000 * 109.46946 * 60.00083 * 1 2 3 25 25 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47337 * 90.02099 * 6 5 4 27 27 H 1.09003 * 109.47017 * 210.02456 * 6 5 4 28 28 H 1.09003 * 109.46968 * 330.01661 * 6 5 4 29 29 H 1.08000 * 118.79009 * 180.21149 * 9 8 7 30 30 H 1.09010 * 109.46972 * 29.98202 * 11 10 9 31 31 H 1.09001 * 109.47390 * 149.97816 * 11 10 9 32 32 H 0.96997 * 119.99939 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 7 1.3565 2.7113 0.0005 5 7 2.0473 3.9274 -0.0003 6 6 1.4253 5.2538 -0.0006 7 6 3.3829 3.6884 -0.0007 8 7 4.4714 4.4766 -0.0010 9 6 5.6718 3.9715 0.0137 10 7 5.8981 2.6328 0.0172 11 6 7.2726 2.1260 0.0253 12 6 7.7513 1.9493 -1.3928 13 1 7.0969 2.1900 -2.2175 14 6 9.0246 1.4804 -1.6372 15 7 9.8217 1.1878 -0.6329 16 14 9.6176 1.2608 -3.3949 17 1 8.5381 1.6567 -4.3346 18 1 10.8118 2.1130 -3.6247 19 1 9.9740 -0.1627 -3.6228 20 6 4.8612 1.7646 0.0137 21 8 5.0512 0.5610 0.0163 22 6 3.5486 2.2944 0.0061 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.2717 5.5834 1.0270 27 1 2.0764 5.9604 -0.5154 28 1 0.4649 5.2046 -0.5138 29 1 6.5183 4.6421 0.0163 30 1 7.9188 2.8365 0.5410 31 1 7.3031 1.1664 0.5413 32 1 10.7174 0.8576 -0.8050 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095398376.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:04 Heat of formation + Delta-G solvation = 49.865816 kcal Electronic energy + Delta-G solvation = -19300.900569 eV Core-core repulsion = 16196.086615 eV Total energy + Delta-G solvation = -3104.813954 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.07474 -40.87900 -38.43884 -36.01152 -34.54397 -34.18604 -31.21056 -29.81025 -29.66672 -27.95064 -25.72581 -25.55495 -23.69119 -22.22918 -19.94928 -19.12286 -18.87039 -18.12854 -17.35102 -17.19091 -16.64460 -16.12173 -15.89140 -15.58219 -15.30424 -14.95144 -14.63258 -14.41516 -13.91641 -13.73748 -13.63391 -13.59812 -13.55059 -13.07775 -12.69798 -12.46484 -12.31460 -12.03977 -11.57272 -11.22963 -11.18248 -11.05833 -10.67653 -10.36718 -9.51400 -8.69282 -8.30407 -6.44675 -0.30841 0.13663 0.42207 0.98300 1.18484 1.39393 1.42795 1.48701 1.53078 1.73278 2.36446 2.59900 2.99089 3.03793 3.39429 3.55025 3.79792 4.11917 4.27226 4.29449 4.32773 4.39538 4.62151 4.68242 4.83330 4.87009 5.02694 5.21216 5.52936 5.67628 5.81421 5.86546 6.08815 6.59835 6.73389 6.90943 7.26231 8.78119 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020488 B = 0.005382 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.328343 B = 5201.032581 C = 6029.735451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.024 6.024 3 C 0.120 3.880 4 N -0.278 5.278 5 N -0.359 5.359 6 C 0.098 3.902 7 C 0.359 3.641 8 N -0.549 5.549 9 C 0.436 3.564 10 N -0.524 5.524 11 C 0.239 3.761 12 C -0.553 4.553 13 H 0.051 0.949 14 C 0.025 3.975 15 N -0.916 5.916 16 Si 0.965 3.035 17 H -0.273 1.273 18 H -0.264 1.264 19 H -0.283 1.283 20 C 0.555 3.445 21 O -0.558 6.558 22 C -0.372 4.372 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.256 0.744 30 H 0.072 0.928 31 H 0.022 0.978 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.880 8.179 1.728 17.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.205 5.795 3 C -0.161 4.161 4 N -0.103 5.103 5 N -0.145 5.145 6 C -0.041 4.041 7 C 0.119 3.881 8 N -0.278 5.278 9 C 0.149 3.851 10 N -0.240 5.240 11 C 0.120 3.880 12 C -0.591 4.591 13 H 0.070 0.930 14 C -0.176 4.176 15 N -0.554 5.554 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.188 1.188 19 H -0.209 1.209 20 C 0.352 3.648 21 O -0.436 6.436 22 C -0.391 4.391 23 H 0.110 0.890 24 H 0.109 0.891 25 H 0.155 0.845 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.272 0.728 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.515 7.646 1.781 18.286 hybrid contribution 0.699 -0.330 -0.730 1.064 sum -15.816 7.316 1.050 17.458 Atomic orbital electron populations 1.23763 0.91824 1.08669 1.06806 1.86359 1.08863 0.93048 1.91242 1.25006 0.91767 0.99719 0.99636 1.77262 1.17547 0.87887 1.27558 1.48283 1.00045 1.07220 1.58952 1.22323 1.00425 0.76146 1.05192 1.19253 0.87537 0.89129 0.92177 1.67744 0.95044 1.34605 1.30451 1.25812 0.95576 0.82788 0.80953 1.47179 1.11227 1.07863 1.57757 1.19559 0.73872 0.96440 0.98168 1.21444 0.99237 1.46559 0.91832 0.93032 1.25646 0.96374 0.93947 1.01669 1.69998 1.08780 1.43985 1.32618 0.85398 0.78462 0.77973 0.79171 1.19796 1.18830 1.20895 1.16474 0.84320 0.86453 0.77570 1.90821 1.85953 1.15226 1.51633 1.20750 0.93256 0.94417 1.30692 0.88966 0.89108 0.84464 0.88919 0.87565 0.87395 0.72833 0.90976 0.95989 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 10.41 113.37 1.18 -1.64 16 2 S -0.02 -0.79 22.62 -56.49 -1.28 -2.07 16 3 C 0.12 4.50 7.53 86.75 0.65 5.15 16 4 N -0.28 -9.09 12.04 -50.80 -0.61 -9.70 16 5 N -0.36 -10.78 4.00 -366.70 -1.47 -12.25 16 6 C 0.10 1.74 11.42 127.77 1.46 3.20 16 7 C 0.36 12.73 7.97 133.86 1.07 13.80 16 8 N -0.55 -17.52 10.43 -196.32 -2.05 -19.56 16 9 C 0.44 14.08 11.46 180.10 2.06 16.14 16 10 N -0.52 -22.43 2.58 -657.77 -1.70 -24.13 16 11 C 0.24 11.67 5.12 85.63 0.44 12.11 16 12 C -0.55 -29.57 9.38 25.60 0.24 -29.33 16 13 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 14 C 0.02 1.34 5.46 84.65 0.46 1.80 16 15 N -0.92 -50.92 13.29 21.44 0.28 -50.64 16 16 Si 0.97 42.61 29.54 68.60 2.03 44.63 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 C 0.55 26.59 7.48 84.98 0.64 27.23 16 21 O -0.56 -30.96 16.62 -4.85 -0.08 -31.04 16 22 C -0.37 -15.70 6.35 -20.00 -0.13 -15.83 16 23 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.26 5.66 8.01 -2.91 -0.02 5.64 16 30 H 0.07 3.21 8.01 -2.38 -0.02 3.20 16 31 H 0.02 1.25 7.45 -2.39 -0.02 1.23 16 32 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -73.87 303.47 4.35 -69.52 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: 1.15 Total: 2.62 kcal Atomic # 6 Polarization: 24.56 SS G_CDS: 8.07 Total: 32.63 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -5.54 Total: -116.29 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.08 Total: -31.04 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -1.28 Total: -2.07 kcal Total: -73.87 4.35 -69.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095398376.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.385 kcal (2) G-P(sol) polarization free energy of solvation -73.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds