Wall clock time and date at job start Tue Mar 31 2020 01:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38163 * 120.03119 * 2 1 4 4 C 1.38241 * 120.05608 * 180.25724 * 3 2 1 5 5 C 1.38291 * 120.11181 * 359.45014 * 4 3 2 6 6 N 1.48001 * 119.97169 * 180.29698 * 5 4 3 7 7 O 1.21801 * 120.00013 * 0.02562 * 6 5 4 8 8 O 1.21800 * 119.99624 * 179.97438 * 6 5 4 9 9 C 1.38122 * 120.05199 * 0.27865 * 5 4 3 10 10 C 1.38710 * 120.02492 * 179.71270 * 2 1 3 11 11 O 1.35905 * 120.05736 * 0.03613 * 10 2 1 12 12 C 1.42901 * 117.00028 * 179.97438 * 11 10 2 13 13 C 1.50704 * 109.46998 * 179.97438 * 12 11 10 14 14 O 1.21296 * 119.99993 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99656 * 179.97438 * 13 12 11 16 16 C 1.37102 * 119.99446 * 180.02562 * 15 13 12 17 17 H 1.07996 * 120.00526 * 359.97438 * 16 15 13 18 18 C 1.38947 * 119.99672 * 180.02562 * 16 15 13 19 19 N 1.31413 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47116 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46846 * 119.99923 * 20 18 16 23 23 H 1.48495 * 109.47553 * 239.99974 * 20 18 16 24 24 H 1.09007 * 109.46949 * 270.29333 * 1 2 3 25 25 H 1.09005 * 109.46971 * 30.28888 * 1 2 3 26 26 H 1.08993 * 109.47512 * 150.29207 * 1 2 3 27 27 H 1.08001 * 119.97128 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.94763 * 179.73109 * 4 3 2 29 29 H 1.08007 * 120.02829 * 179.97438 * 9 5 4 30 30 H 1.08993 * 109.47358 * 300.00088 * 12 11 10 31 31 H 1.08996 * 109.46721 * 60.00327 * 12 11 10 32 32 H 0.96994 * 120.00246 * 0.02562 * 15 13 12 33 33 H 0.97005 * 120.00194 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 -0.0054 5 6 4.2752 0.0008 0.0007 6 7 5.7552 0.0051 0.0016 7 8 6.3612 1.0617 -0.0026 8 8 6.3672 -1.0479 0.0074 9 6 3.5886 -1.1976 0.0064 10 6 2.2011 -1.2010 0.0060 11 8 1.5233 -2.3789 0.0112 12 6 2.3033 -3.5762 0.0167 13 6 1.3869 -4.7727 0.0225 14 8 0.1842 -4.6154 0.0216 15 7 1.9039 -6.0173 0.0278 16 6 1.0702 -7.1057 0.0325 17 1 -0.0006 -6.9658 0.0325 18 6 1.6031 -8.3889 0.0385 19 7 2.9062 -8.5593 0.0390 20 14 0.4673 -9.8720 0.0457 21 1 -0.9452 -9.4137 0.0432 22 1 0.7219 -10.6963 -1.1630 23 1 0.7223 -10.6849 1.2619 24 1 -0.3633 0.0053 1.0277 25 1 -0.3633 0.8874 -0.5183 26 1 -0.3634 -0.8925 -0.5092 27 1 1.6585 2.1315 0.0004 28 1 4.1196 2.1328 -0.0098 29 1 4.1313 -2.1315 0.0107 30 1 2.9323 -3.6042 -0.8730 31 1 2.9319 -3.5962 0.9069 32 1 2.8657 -6.1430 0.0281 33 1 3.2782 -9.4551 0.0428 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108662344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:42 Heat of formation + Delta-G solvation = -54.848003 kcal Electronic energy + Delta-G solvation = -20873.252401 eV Core-core repulsion = 17288.852093 eV Total energy + Delta-G solvation = -3584.400308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.27341 -40.60273 -38.57617 -37.30520 -36.62329 -34.11878 -33.59672 -31.47835 -30.76904 -28.69017 -28.41063 -25.21557 -24.77766 -22.88875 -21.93128 -19.77136 -19.69499 -18.74024 -18.14429 -17.61451 -16.98344 -16.54045 -16.19598 -15.99284 -15.52215 -14.72144 -14.36580 -14.18840 -14.05932 -13.34981 -13.13830 -12.73822 -12.48750 -12.45964 -11.91436 -11.87921 -11.68652 -11.58737 -11.32482 -11.21243 -11.17830 -11.08122 -10.45097 -10.37342 -9.69991 -9.61107 -8.65747 -8.64299 -8.16925 -6.57645 -4.00149 -0.31682 0.77435 1.23679 1.28728 2.81398 3.04388 3.06490 3.19953 3.27225 3.61664 4.06260 4.15823 4.28548 4.41050 4.53693 4.68866 4.95975 5.01750 5.04036 5.18991 5.29083 5.43568 5.45467 5.48913 5.56856 5.74979 5.94605 5.97814 6.12894 6.29650 7.05408 7.40853 7.55981 7.85094 8.38662 8.99045 9.29692 9.78704 10.59344 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.003780 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.966067 B = 7405.581501 C = 8614.100910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.062 4.062 3 C -0.086 4.086 4 C -0.094 4.094 5 C -0.012 4.012 6 N 0.029 4.971 7 O -0.163 6.163 8 O -0.158 6.158 9 C -0.152 4.152 10 C 0.141 3.859 11 O -0.267 6.267 12 C 0.043 3.957 13 C 0.438 3.562 14 O -0.575 6.575 15 N -0.549 5.549 16 C -0.304 4.304 17 H 0.107 0.893 18 C 0.027 3.973 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.153 0.847 28 H 0.152 0.848 29 H 0.160 0.840 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.395 0.605 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 17.246 -0.062 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.063 4.063 3 C -0.104 4.104 4 C -0.113 4.113 5 C -0.095 4.095 6 N 0.548 4.452 7 O -0.379 6.379 8 O -0.375 6.375 9 C -0.172 4.172 10 C 0.093 3.907 11 O -0.178 6.178 12 C -0.035 4.035 13 C 0.223 3.777 14 O -0.459 6.459 15 N -0.186 5.186 16 C -0.433 4.433 17 H 0.125 0.875 18 C -0.176 4.176 19 N -0.535 5.535 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.177 0.823 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.229 0.771 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.518 17.108 -0.064 17.116 hybrid contribution 1.003 -0.985 0.014 1.406 sum 0.486 16.124 -0.050 16.131 Atomic orbital electron populations 1.20816 0.88749 1.04172 1.03580 1.19811 0.98048 0.89938 0.98491 1.20898 0.92230 0.97951 0.99346 1.20901 0.94607 0.96900 0.98908 1.20756 0.79018 0.96342 1.13406 1.43625 1.03680 1.00427 0.97445 1.94512 1.69346 1.20500 1.53494 1.94568 1.68839 1.20853 1.53193 1.21119 0.93829 0.98712 1.03572 1.18737 0.88756 0.87540 0.95652 1.86273 1.33723 1.10960 1.86849 1.22719 0.94597 0.83489 1.02733 1.19132 0.88682 0.83430 0.86494 1.90574 1.14729 1.85196 1.55371 1.41704 1.09882 1.03593 1.63458 1.19777 0.92085 0.83106 1.48371 0.87512 1.25325 0.96423 0.99199 0.96681 1.69616 1.10538 1.24046 1.49279 0.85739 0.80080 0.80290 0.77898 1.19060 1.20538 1.20534 0.90008 0.90860 0.89454 0.82976 0.82991 0.82259 0.89912 0.89908 0.77135 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.79 36.01 0.35 -0.77 16 2 C -0.06 -0.67 5.89 -104.47 -0.62 -1.29 16 3 C -0.09 -0.72 9.70 -39.61 -0.38 -1.11 16 4 C -0.09 -0.91 9.55 -39.56 -0.38 -1.29 16 5 C -0.01 -0.15 6.85 -79.98 -0.55 -0.70 16 6 N 0.03 0.42 4.45 33.95 0.15 0.57 16 7 O -0.16 -2.32 18.45 -29.46 -0.54 -2.86 16 8 O -0.16 -2.44 18.45 -29.46 -0.54 -2.99 16 9 C -0.15 -1.97 8.54 -39.43 -0.34 -2.31 16 10 C 0.14 1.90 6.66 -39.22 -0.26 1.64 16 11 O -0.27 -4.45 8.71 -39.35 -0.34 -4.79 16 12 C 0.04 0.73 5.22 36.01 0.19 0.91 16 13 C 0.44 9.98 7.86 -10.98 -0.09 9.90 16 14 O -0.57 -15.33 16.08 -14.36 -0.23 -15.57 16 15 N -0.55 -13.30 5.29 -10.96 -0.06 -13.36 16 16 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 17 H 0.11 3.00 7.16 -52.49 -0.38 2.63 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 19 N -0.89 -23.41 13.05 55.50 0.72 -22.69 16 20 Si 0.93 20.22 29.55 -169.99 -5.02 15.20 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 25 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.09 1.05 7.53 -51.93 -0.39 0.66 16 27 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 28 H 0.15 1.19 7.61 -52.49 -0.40 0.79 16 29 H 0.16 2.00 5.85 -52.48 -0.31 1.69 16 30 H 0.08 1.20 7.66 -51.93 -0.40 0.80 16 31 H 0.08 1.20 7.66 -51.93 -0.40 0.81 16 32 H 0.39 9.01 7.90 -40.82 -0.32 8.69 16 33 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 304.55 15.07 4.59 4.59 Total: -1.00 -31.32 304.55 -6.58 -37.90 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -2.99 Total: 6.72 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.31 Total: -2.73 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.82 Total: -35.48 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -1.66 Total: -26.21 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.32 -6.58 -37.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108662344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.950 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds