Wall clock time and date at job start Tue Mar 31 2020 01:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38163 * 120.03119 * 2 1 4 4 C 1.38241 * 120.05608 * 180.25724 * 3 2 1 5 5 C 1.38291 * 120.11181 * 359.45014 * 4 3 2 6 6 N 1.48001 * 119.97169 * 180.29698 * 5 4 3 7 7 O 1.21801 * 120.00013 * 0.02562 * 6 5 4 8 8 O 1.21800 * 119.99624 * 179.97438 * 6 5 4 9 9 C 1.38122 * 120.05199 * 0.27865 * 5 4 3 10 10 C 1.38710 * 120.02492 * 179.71270 * 2 1 3 11 11 O 1.35905 * 120.05736 * 0.03613 * 10 2 1 12 12 C 1.42901 * 117.00028 * 179.97438 * 11 10 2 13 13 C 1.50704 * 109.46998 * 179.97438 * 12 11 10 14 14 O 1.21296 * 119.99993 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99656 * 179.97438 * 13 12 11 16 16 C 1.37102 * 119.99446 * 180.02562 * 15 13 12 17 17 H 1.07996 * 120.00526 * 359.97438 * 16 15 13 18 18 C 1.38947 * 119.99672 * 180.02562 * 16 15 13 19 19 N 1.31413 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47116 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46846 * 119.99923 * 20 18 16 23 23 H 1.48495 * 109.47553 * 239.99974 * 20 18 16 24 24 H 1.09007 * 109.46949 * 270.29333 * 1 2 3 25 25 H 1.09005 * 109.46971 * 30.28888 * 1 2 3 26 26 H 1.08993 * 109.47512 * 150.29207 * 1 2 3 27 27 H 1.08001 * 119.97128 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.94763 * 179.73109 * 4 3 2 29 29 H 1.08007 * 120.02829 * 179.97438 * 9 5 4 30 30 H 1.08993 * 109.47358 * 300.00088 * 12 11 10 31 31 H 1.08996 * 109.46721 * 60.00327 * 12 11 10 32 32 H 0.96994 * 120.00246 * 0.02562 * 15 13 12 33 33 H 0.97005 * 120.00194 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 -0.0054 5 6 4.2752 0.0008 0.0007 6 7 5.7552 0.0051 0.0016 7 8 6.3612 1.0617 -0.0026 8 8 6.3672 -1.0479 0.0074 9 6 3.5886 -1.1976 0.0064 10 6 2.2011 -1.2010 0.0060 11 8 1.5233 -2.3789 0.0112 12 6 2.3033 -3.5762 0.0167 13 6 1.3869 -4.7727 0.0225 14 8 0.1842 -4.6154 0.0216 15 7 1.9039 -6.0173 0.0278 16 6 1.0702 -7.1057 0.0325 17 1 -0.0006 -6.9658 0.0325 18 6 1.6031 -8.3889 0.0385 19 7 2.9062 -8.5593 0.0390 20 14 0.4673 -9.8720 0.0457 21 1 -0.9452 -9.4137 0.0432 22 1 0.7219 -10.6963 -1.1630 23 1 0.7223 -10.6849 1.2619 24 1 -0.3633 0.0053 1.0277 25 1 -0.3633 0.8874 -0.5183 26 1 -0.3634 -0.8925 -0.5092 27 1 1.6585 2.1315 0.0004 28 1 4.1196 2.1328 -0.0098 29 1 4.1313 -2.1315 0.0107 30 1 2.9323 -3.6042 -0.8730 31 1 2.9319 -3.5962 0.9069 32 1 2.8657 -6.1430 0.0281 33 1 3.2782 -9.4551 0.0428 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108662344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:42 Heat of formation + Delta-G solvation = -74.077804 kcal Electronic energy + Delta-G solvation = -20874.086268 eV Core-core repulsion = 17288.852093 eV Total energy + Delta-G solvation = -3585.234175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.31984 -41.66960 -40.18040 -38.58757 -37.71507 -36.08484 -34.48042 -33.44096 -31.71774 -29.89263 -29.58719 -26.76057 -26.01264 -23.91680 -22.88869 -21.41505 -20.79311 -20.14646 -19.75724 -18.67249 -18.21480 -17.90184 -17.46640 -17.03389 -16.81883 -16.41467 -15.80291 -15.48634 -15.16207 -14.83280 -14.43061 -13.82704 -13.59809 -13.51077 -13.36382 -12.98763 -12.95713 -12.83304 -12.57653 -12.49008 -12.40125 -12.34120 -12.22936 -12.12390 -11.61758 -10.54621 -10.42045 -10.14632 -9.64395 -8.55221 -6.06000 -1.32000 -0.07309 0.23925 0.30225 1.32571 1.40462 1.52674 1.66072 1.83458 2.18451 2.29910 3.09079 3.10295 3.33217 3.37475 3.56130 3.72353 3.87315 4.05984 4.06806 4.15317 4.31125 4.47648 4.65089 4.75106 4.76277 5.02289 5.12712 5.24401 5.34456 5.39593 5.82215 5.99499 6.44493 6.45581 7.00410 7.36900 7.90292 8.61835 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.003780 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.966067 B = 7405.581501 C = 8614.100910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.065 4.065 4 C -0.076 4.076 5 C -0.031 4.031 6 N 0.031 4.969 7 O -0.148 6.148 8 O -0.206 6.206 9 C -0.159 4.159 10 C 0.115 3.885 11 O -0.293 6.293 12 C 0.058 3.942 13 C 0.436 3.564 14 O -0.619 6.619 15 N -0.557 5.557 16 C -0.339 4.339 17 H 0.084 0.916 18 C -0.007 4.007 19 N -0.914 5.914 20 Si 0.997 3.003 21 H -0.271 1.271 22 H -0.269 1.269 23 H -0.269 1.269 24 H 0.088 0.912 25 H 0.109 0.891 26 H 0.056 0.944 27 H 0.202 0.798 28 H 0.179 0.821 29 H 0.154 0.846 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.400 0.600 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.883 19.458 -0.051 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.083 4.083 4 C -0.096 4.096 5 C -0.114 4.114 6 N 0.546 4.454 7 O -0.370 6.370 8 O -0.412 6.412 9 C -0.179 4.179 10 C 0.068 3.932 11 O -0.205 6.205 12 C -0.020 4.020 13 C 0.223 3.777 14 O -0.505 6.505 15 N -0.194 5.194 16 C -0.468 4.468 17 H 0.102 0.898 18 C -0.208 4.208 19 N -0.554 5.554 20 Si 0.820 3.180 21 H -0.196 1.196 22 H -0.194 1.194 23 H -0.194 1.194 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.075 0.925 27 H 0.218 0.782 28 H 0.197 0.803 29 H 0.171 0.829 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.235 0.765 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.688 19.245 -0.053 19.257 hybrid contribution 1.028 -1.432 0.009 1.763 sum 0.340 17.813 -0.043 17.816 Atomic orbital electron populations 1.20864 0.87926 1.04403 1.04061 1.20195 0.98824 0.89799 0.97097 1.21396 0.91570 0.98646 0.96703 1.21371 0.95235 0.96733 0.96220 1.20933 0.77756 0.97352 1.15382 1.43881 1.04504 1.00095 0.96920 1.94472 1.69981 1.20331 1.52195 1.94577 1.69627 1.21204 1.55764 1.21058 0.93720 0.99042 1.04107 1.18976 0.89059 0.87124 0.98075 1.86212 1.34535 1.11663 1.88075 1.22436 0.92955 0.81730 1.04918 1.20084 0.88934 0.84529 0.84190 1.90533 1.17084 1.86134 1.56793 1.41745 1.09884 1.03898 1.63922 1.19742 0.91591 0.84738 1.50714 0.89840 1.26104 0.97909 1.01186 0.95589 1.69672 1.11611 1.25044 1.49088 0.84820 0.77841 0.76910 0.78474 1.19571 1.19448 1.19436 0.89377 0.87256 0.92532 0.78152 0.80318 0.82854 0.87659 0.87641 0.76521 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.79 71.24 0.70 -1.26 16 2 C -0.06 -1.11 5.89 -19.77 -0.12 -1.22 16 3 C -0.07 -0.79 9.70 22.25 0.22 -0.57 16 4 C -0.08 -1.19 9.55 22.28 0.21 -0.97 16 5 C -0.03 -0.72 6.85 36.36 0.25 -0.48 16 6 N 0.03 0.85 4.45 -46.51 -0.21 0.64 16 7 O -0.15 -3.93 18.45 18.88 0.35 -3.58 16 8 O -0.21 -6.50 18.45 18.89 0.35 -6.15 16 9 C -0.16 -4.02 8.54 22.36 0.19 -3.83 16 10 C 0.11 2.98 6.66 22.51 0.15 3.13 16 11 O -0.29 -9.85 8.71 -73.44 -0.64 -10.49 16 12 C 0.06 1.97 5.22 71.24 0.37 2.34 16 13 C 0.44 20.55 7.86 87.66 0.69 21.24 16 14 O -0.62 -34.41 16.08 15.96 0.26 -34.16 16 15 N -0.56 -27.87 5.29 -306.98 -1.62 -29.49 16 16 C -0.34 -18.76 9.68 84.04 0.81 -17.95 16 17 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 18 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 19 N -0.91 -47.99 13.05 21.66 0.28 -47.71 16 20 Si 1.00 41.59 29.55 68.60 2.03 43.61 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 24 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.11 1.03 8.09 -2.38 -0.02 1.02 16 26 H 0.06 1.34 7.53 -2.39 -0.02 1.32 16 27 H 0.20 0.56 8.06 -2.91 -0.02 0.54 16 28 H 0.18 1.87 7.61 -2.91 -0.02 1.85 16 29 H 0.15 3.92 5.85 -2.91 -0.02 3.90 16 30 H 0.11 3.08 7.66 -2.39 -0.02 3.06 16 31 H 0.11 3.08 7.66 -2.39 -0.02 3.07 16 32 H 0.40 18.78 7.90 -92.71 -0.73 18.05 16 33 H 0.28 13.75 8.31 -92.70 -0.77 12.98 16 Total: -1.00 -70.73 304.55 5.18 -65.55 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.44 Total: 21.24 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 3.94 Total: 0.53 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -1.55 Total: -76.56 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: 0.31 Total: -54.38 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -70.73 5.18 -65.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108662344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.526 kcal (2) G-P(sol) polarization free energy of solvation -70.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds