Wall clock time and date at job start Tue Mar 31 2020 01:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00034 * 2 1 4 4 C 1.38211 * 120.00175 * 180.23734 * 3 2 1 5 5 C 1.38260 * 120.00008 * 359.79887 * 4 3 2 6 6 C 1.38215 * 119.99680 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99534 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.46813 * 159.97826 * 7 6 5 9 9 C 1.53001 * 109.46902 * 279.97011 * 7 6 5 10 10 O 1.45190 * 109.47330 * 39.97230 * 7 6 5 11 11 C 1.34239 * 116.99555 * 150.00113 * 10 7 6 12 12 O 1.20816 * 120.00072 * 359.97438 * 11 10 7 13 13 C 1.50705 * 119.99548 * 180.02562 * 11 10 7 14 14 S 1.80998 * 109.46915 * 179.97438 * 13 11 10 15 15 C 1.76196 * 100.00217 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99606 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00366 * 179.97438 * 15 14 13 18 18 N 1.31633 * 119.99537 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00256 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46889 * 90.00430 * 19 17 15 21 21 H 1.48493 * 109.47355 * 210.00493 * 19 17 15 22 22 H 1.48499 * 109.47123 * 330.00764 * 19 17 15 23 23 C 1.38211 * 120.00162 * 179.80188 * 2 1 3 24 24 H 1.09001 * 109.47236 * 270.19071 * 1 2 3 25 25 H 1.09000 * 109.47285 * 30.19264 * 1 2 3 26 26 H 1.08993 * 109.47149 * 150.19759 * 1 2 3 27 27 H 1.08003 * 120.00342 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.00392 * 179.78930 * 4 3 2 29 29 H 1.07996 * 119.99860 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47594 * 300.00745 * 9 7 6 31 31 H 1.09005 * 109.46720 * 60.00758 * 9 7 6 32 32 H 1.08997 * 109.46976 * 180.02562 * 9 7 6 33 33 H 1.08994 * 109.47074 * 299.99951 * 13 11 10 34 34 H 1.08997 * 109.47311 * 60.00146 * 13 11 10 35 35 H 0.97005 * 119.99724 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.00200 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 -0.0050 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0020 7 6 4.3342 -2.5020 -0.0035 8 1 3.6809 -3.2991 0.3516 9 6 4.8003 -2.8201 -1.4256 10 8 5.4878 -2.3957 0.8717 11 6 5.8993 -3.5211 1.4768 12 8 5.3145 -4.5602 1.2821 13 6 7.0899 -3.4880 2.4001 14 16 7.3918 -5.1481 3.0551 15 6 8.7951 -4.8258 4.0707 16 1 9.1978 -3.8257 4.1337 17 6 9.3822 -5.8570 4.7907 18 7 8.8910 -7.0758 4.7143 19 14 10.8695 -5.5152 5.8681 20 1 10.4174 -5.1515 7.2350 21 1 11.7216 -6.7294 5.9352 22 1 11.6517 -4.3928 5.2904 23 6 2.1980 -1.1969 0.0041 24 1 -0.3634 0.0034 1.0277 25 1 -0.3634 0.8882 -0.5168 26 1 -0.3633 -0.8917 -0.5107 27 1 1.6583 2.1327 0.0004 28 1 4.1204 2.1327 -0.0084 29 1 5.3516 0.0001 -0.0100 30 1 3.9343 -2.8998 -2.0826 31 1 5.4536 -2.0230 -1.7806 32 1 5.3450 -3.7643 -1.4267 33 1 7.9674 -3.1491 1.8494 34 1 6.8915 -2.8031 3.2245 35 1 9.3016 -7.7966 5.2172 36 1 1.6581 -2.1323 0.0070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121834720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:38 Heat of formation + Delta-G solvation = -76.265104 kcal Electronic energy + Delta-G solvation = -18526.361261 eV Core-core repulsion = 15487.325453 eV Total energy + Delta-G solvation = -3039.035809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.39502 -39.32364 -36.37146 -33.57659 -32.48483 -32.35474 -29.94187 -29.16580 -27.09126 -25.56922 -24.22396 -22.23707 -21.44379 -19.92583 -17.97687 -17.18933 -16.83524 -15.97731 -15.83821 -15.35273 -14.84727 -14.70779 -14.19121 -14.05234 -13.65650 -13.57339 -13.23068 -12.97687 -12.68078 -12.48019 -12.43711 -12.11730 -11.98028 -11.57465 -11.28903 -11.10044 -11.06969 -10.89314 -10.79840 -10.48278 -9.99119 -9.90181 -9.11497 -8.99687 -8.77279 -8.35808 -6.60139 -6.27333 -3.99863 1.11701 1.22256 2.65700 2.67308 3.20617 3.23815 3.28557 3.48675 3.62439 4.14844 4.43193 4.62874 4.71687 4.92876 4.99851 5.04986 5.08529 5.13725 5.16171 5.31649 5.35856 5.40335 5.45899 5.57622 5.71300 5.74775 5.78520 5.83838 5.95570 6.05001 6.08882 6.30507 6.37522 6.42135 6.76344 6.82800 7.55445 8.18340 8.30430 9.18200 10.80188 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.033639 B = 0.003113 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.168121 B = 8992.377314 C = 9234.033336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.119 4.119 4 C -0.119 4.119 5 C -0.097 4.097 6 C -0.081 4.081 7 C 0.125 3.875 8 H 0.093 0.907 9 C -0.163 4.163 10 O -0.353 6.353 11 C 0.480 3.520 12 O -0.488 6.488 13 C -0.129 4.129 14 S -0.059 6.059 15 C -0.536 4.536 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.922 3.078 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.271 1.271 23 C -0.108 4.108 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.269 0.731 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.818 15.556 -11.072 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.137 4.137 4 C -0.137 4.137 5 C -0.115 4.115 6 C -0.082 4.082 7 C 0.070 3.930 8 H 0.111 0.889 9 C -0.220 4.220 10 O -0.271 6.271 11 C 0.321 3.679 12 O -0.373 6.373 13 C -0.276 4.276 14 S 0.168 5.832 15 C -0.684 4.684 16 H 0.094 0.906 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.748 3.252 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.196 1.196 23 C -0.126 4.126 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.566 14.079 -11.294 22.579 hybrid contribution 1.569 1.298 0.906 2.229 sum -11.998 15.377 -10.388 22.098 Atomic orbital electron populations 1.20783 0.91076 1.02722 1.02439 1.19849 0.96078 0.92944 1.00104 1.21056 0.94334 0.97428 1.00919 1.21162 0.94249 0.98047 1.00247 1.21049 1.00541 0.91520 0.98388 1.19650 0.93325 0.94104 1.01073 1.21369 0.86176 0.95365 0.90086 0.88878 1.22167 1.02429 1.02898 0.94486 1.86582 1.45865 1.37813 1.56852 1.23312 0.84764 0.81331 0.78476 1.90649 1.54934 1.31654 1.60076 1.23298 0.95649 1.08889 0.99805 1.85404 1.40036 1.00492 1.57278 1.22844 1.15638 0.98141 1.31764 0.90596 1.25005 0.97776 0.94369 0.96381 1.70015 1.40051 1.00180 1.40013 0.86119 0.81000 0.78029 0.80090 1.20189 1.20706 1.19579 1.20862 0.92976 0.98006 1.00739 0.91105 0.91582 0.91493 0.86149 0.85879 0.85352 0.90816 0.91481 0.91177 0.87929 0.87960 0.92074 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 2 C -0.09 -0.87 5.88 -104.63 -0.62 -1.49 16 3 C -0.12 -1.11 9.70 -39.58 -0.38 -1.50 16 4 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 5 C -0.10 -1.12 9.36 -39.58 -0.37 -1.49 16 6 C -0.08 -1.00 4.98 -104.62 -0.52 -1.52 16 7 C 0.13 1.73 2.77 -27.88 -0.08 1.65 16 8 H 0.09 1.37 7.02 -51.93 -0.36 1.00 16 9 C -0.16 -1.93 9.53 37.16 0.35 -1.58 16 10 O -0.35 -5.76 9.21 -39.28 -0.36 -6.12 16 11 C 0.48 9.32 7.95 36.01 0.29 9.61 16 12 O -0.49 -10.71 15.08 -18.74 -0.28 -10.99 16 13 C -0.13 -2.65 6.27 36.01 0.23 -2.42 16 14 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 15 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 16 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -25.83 13.22 55.49 0.73 -25.09 16 19 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 C -0.11 -1.18 9.32 -39.58 -0.37 -1.55 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 26 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 28 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 29 H 0.13 1.44 7.78 -52.49 -0.41 1.04 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.95 8.14 -51.92 -0.42 1.53 16 34 H 0.10 1.97 8.14 -51.92 -0.42 1.55 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.12 1.19 8.04 -52.49 -0.42 0.77 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -32.25 329.84 -8.45 -40.69 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.96 Total: -0.77 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -1.31 Total: -15.10 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.73 Total: -25.09 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.64 Total: -17.11 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.25 -8.45 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121834720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.573 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds