Wall clock time and date at job start Tue Mar 31 2020 01:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00034 * 2 1 4 4 C 1.38211 * 120.00175 * 180.23734 * 3 2 1 5 5 C 1.38260 * 120.00008 * 359.79887 * 4 3 2 6 6 C 1.38215 * 119.99680 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99534 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.46813 * 159.97826 * 7 6 5 9 9 C 1.53001 * 109.46902 * 279.97011 * 7 6 5 10 10 O 1.45190 * 109.47330 * 39.97230 * 7 6 5 11 11 C 1.34239 * 116.99555 * 150.00113 * 10 7 6 12 12 O 1.20816 * 120.00072 * 359.97438 * 11 10 7 13 13 C 1.50705 * 119.99548 * 180.02562 * 11 10 7 14 14 S 1.80998 * 109.46915 * 179.97438 * 13 11 10 15 15 C 1.76196 * 100.00217 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99606 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00366 * 179.97438 * 15 14 13 18 18 N 1.31633 * 119.99537 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00256 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46889 * 90.00430 * 19 17 15 21 21 H 1.48493 * 109.47355 * 210.00493 * 19 17 15 22 22 H 1.48499 * 109.47123 * 330.00764 * 19 17 15 23 23 C 1.38211 * 120.00162 * 179.80188 * 2 1 3 24 24 H 1.09001 * 109.47236 * 270.19071 * 1 2 3 25 25 H 1.09000 * 109.47285 * 30.19264 * 1 2 3 26 26 H 1.08993 * 109.47149 * 150.19759 * 1 2 3 27 27 H 1.08003 * 120.00342 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.00392 * 179.78930 * 4 3 2 29 29 H 1.07996 * 119.99860 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47594 * 300.00745 * 9 7 6 31 31 H 1.09005 * 109.46720 * 60.00758 * 9 7 6 32 32 H 1.08997 * 109.46976 * 180.02562 * 9 7 6 33 33 H 1.08994 * 109.47074 * 299.99951 * 13 11 10 34 34 H 1.08997 * 109.47311 * 60.00146 * 13 11 10 35 35 H 0.97005 * 119.99724 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.00200 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 -0.0050 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0020 7 6 4.3342 -2.5020 -0.0035 8 1 3.6809 -3.2991 0.3516 9 6 4.8003 -2.8201 -1.4256 10 8 5.4878 -2.3957 0.8717 11 6 5.8993 -3.5211 1.4768 12 8 5.3145 -4.5602 1.2821 13 6 7.0899 -3.4880 2.4001 14 16 7.3918 -5.1481 3.0551 15 6 8.7951 -4.8258 4.0707 16 1 9.1978 -3.8257 4.1337 17 6 9.3822 -5.8570 4.7907 18 7 8.8910 -7.0758 4.7143 19 14 10.8695 -5.5152 5.8681 20 1 10.4174 -5.1515 7.2350 21 1 11.7216 -6.7294 5.9352 22 1 11.6517 -4.3928 5.2904 23 6 2.1980 -1.1969 0.0041 24 1 -0.3634 0.0034 1.0277 25 1 -0.3634 0.8882 -0.5168 26 1 -0.3633 -0.8917 -0.5107 27 1 1.6583 2.1327 0.0004 28 1 4.1204 2.1327 -0.0084 29 1 5.3516 0.0001 -0.0100 30 1 3.9343 -2.8998 -2.0826 31 1 5.4536 -2.0230 -1.7806 32 1 5.3450 -3.7643 -1.4267 33 1 7.9674 -3.1491 1.8494 34 1 6.8915 -2.8031 3.2245 35 1 9.3016 -7.7966 5.2172 36 1 1.6581 -2.1323 0.0070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121834720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:38 Heat of formation + Delta-G solvation = -92.940081 kcal Electronic energy + Delta-G solvation = -18527.084343 eV Core-core repulsion = 15487.325453 eV Total energy + Delta-G solvation = -3039.758890 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.73553 -40.27995 -37.76536 -34.61945 -34.56192 -33.14916 -31.33796 -30.30153 -27.76715 -27.71528 -25.26394 -23.03133 -22.72955 -21.03008 -19.93068 -18.68403 -17.88022 -17.38404 -16.99661 -16.89503 -16.29794 -16.05216 -15.61303 -15.05721 -14.73774 -14.62908 -14.45564 -14.13979 -13.99316 -13.71389 -13.29751 -13.18443 -13.04462 -12.90420 -12.80802 -12.67108 -12.57172 -12.16681 -11.82926 -11.78354 -11.71423 -11.51437 -11.16568 -10.39367 -9.80506 -9.55496 -8.74691 -8.38176 -6.18082 0.27748 0.43914 1.03262 1.10615 1.40815 1.42987 1.55044 1.87302 2.23287 2.78133 2.96894 3.24213 3.47669 3.74023 3.85128 4.00568 4.06298 4.11399 4.16386 4.24807 4.41676 4.48104 4.52784 4.59667 4.70030 4.82869 4.84536 4.96127 5.04112 5.08821 5.24428 5.31059 5.40401 5.53341 5.64156 5.64877 6.06700 6.17461 6.66886 7.03502 8.71142 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.033639 B = 0.003113 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.168121 B = 8992.377314 C = 9234.033336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.113 4.113 6 C -0.098 4.098 7 C 0.121 3.879 8 H 0.080 0.920 9 C -0.157 4.157 10 O -0.344 6.344 11 C 0.488 3.512 12 O -0.519 6.519 13 C -0.108 4.108 14 S -0.136 6.136 15 C -0.549 4.549 16 H 0.086 0.914 17 C 0.016 3.984 18 N -0.910 5.910 19 Si 1.000 3.000 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.258 1.258 23 C -0.121 4.121 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.126 0.874 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.273 0.727 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.950 18.164 -11.193 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.131 4.131 6 C -0.098 4.098 7 C 0.067 3.933 8 H 0.098 0.902 9 C -0.214 4.214 10 O -0.262 6.262 11 C 0.331 3.669 12 O -0.407 6.407 13 C -0.257 4.257 14 S 0.091 5.909 15 C -0.696 4.696 16 H 0.104 0.896 17 C -0.189 4.189 18 N -0.546 5.546 19 Si 0.822 3.178 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.182 1.182 23 C -0.139 4.139 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.165 0.835 28 H 0.163 0.837 29 H 0.144 0.856 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.712 16.715 -11.433 24.456 hybrid contribution 1.473 0.605 0.850 1.805 sum -12.238 17.319 -10.583 23.701 Atomic orbital electron populations 1.20838 0.89169 1.03853 1.03073 1.20203 0.97565 0.92575 0.99019 1.21436 0.94316 0.98417 0.99565 1.21453 0.94799 0.98270 0.99320 1.21145 1.00619 0.92013 0.99328 1.19586 0.93835 0.93369 1.03061 1.21620 0.85088 0.96320 0.90287 0.90242 1.22147 1.03315 1.02231 0.93741 1.86549 1.46814 1.35942 1.56852 1.23001 0.84167 0.81561 0.78186 1.90642 1.55874 1.32944 1.61211 1.23092 0.97153 1.04728 1.00701 1.85517 1.40706 1.06413 1.58277 1.23194 1.15743 0.98780 1.31903 0.89621 1.26128 1.01097 0.93950 0.97756 1.70167 1.41864 1.01371 1.41221 0.84925 0.76673 0.78271 0.77956 1.19271 1.20196 1.18176 1.21037 0.92613 0.99081 1.01159 0.90606 0.89900 0.91006 0.83478 0.83655 0.85624 0.88692 0.90483 0.92884 0.85968 0.86247 0.91824 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.01 71.23 0.71 -0.59 16 2 C -0.09 -1.62 5.88 -19.87 -0.12 -1.74 16 3 C -0.12 -1.89 9.70 22.27 0.22 -1.68 16 4 C -0.12 -2.11 10.05 22.27 0.22 -1.88 16 5 C -0.11 -2.47 9.36 22.27 0.21 -2.26 16 6 C -0.10 -2.35 4.98 -19.86 -0.10 -2.45 16 7 C 0.12 3.35 2.77 29.85 0.08 3.44 16 8 H 0.08 2.41 7.02 -2.38 -0.02 2.39 16 9 C -0.16 -3.69 9.53 71.98 0.69 -3.01 16 10 O -0.34 -11.16 9.21 -51.50 -0.47 -11.63 16 11 C 0.49 19.12 7.95 71.24 0.57 19.68 16 12 O -0.52 -23.43 15.08 21.99 0.33 -23.10 16 13 C -0.11 -4.44 6.27 71.24 0.45 -3.99 16 14 S -0.14 -7.46 20.57 -56.49 -1.16 -8.62 16 15 C -0.55 -30.98 9.50 67.95 0.65 -30.34 16 16 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 17 C 0.02 0.89 5.49 84.86 0.47 1.35 16 18 N -0.91 -55.11 13.22 21.65 0.29 -54.82 16 19 Si 1.00 43.12 29.55 68.60 2.03 45.14 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 23 C -0.12 -2.53 9.32 22.27 0.21 -2.33 16 24 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 26 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 27 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 28 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.13 2.72 7.78 -2.91 -0.02 2.69 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.12 4.53 8.14 -2.40 -0.02 4.51 16 34 H 0.12 4.49 8.14 -2.40 -0.02 4.47 16 35 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 36 H 0.13 2.43 8.04 -2.91 -0.02 2.41 16 Total: -1.00 -70.40 329.84 6.32 -64.08 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.06 Total: 14.73 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 4.25 Total: -25.79 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.29 Total: -54.82 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.14 Total: -34.73 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -7.46 SS G_CDS: -1.16 Total: -8.62 kcal Total: -70.40 6.32 -64.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121834720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.858 kcal (2) G-P(sol) polarization free energy of solvation -70.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds