Wall clock time and date at job start Tue Mar 31 2020 01:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00010 * 2 1 4 4 C 1.38211 * 120.00113 * 180.25649 * 3 2 1 5 5 C 1.38261 * 120.00022 * 359.78451 * 4 3 2 6 6 C 1.38214 * 119.99661 * 359.95720 * 5 4 3 7 7 C 1.50703 * 119.99514 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46568 * 205.02353 * 7 6 5 9 9 C 1.52998 * 109.47413 * 85.02077 * 7 6 5 10 10 O 1.45201 * 109.47280 * 325.01498 * 7 6 5 11 11 C 1.34224 * 117.00232 * 210.00557 * 10 7 6 12 12 O 1.20826 * 119.99956 * 0.02562 * 11 10 7 13 13 C 1.50702 * 120.00146 * 180.02562 * 11 10 7 14 14 S 1.81001 * 109.47181 * 179.97438 * 13 11 10 15 15 C 1.76200 * 99.99770 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00035 * 0.02562 * 15 14 13 17 17 C 1.38801 * 119.99720 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99978 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46986 * 90.00071 * 19 17 15 21 21 H 1.48499 * 109.46915 * 210.00266 * 19 17 15 22 22 H 1.48499 * 109.46913 * 330.00060 * 19 17 15 23 23 C 1.38211 * 120.00162 * 179.75882 * 2 1 3 24 24 H 1.09001 * 109.47236 * 270.23378 * 1 2 3 25 25 H 1.09000 * 109.47285 * 30.23570 * 1 2 3 26 26 H 1.08993 * 109.47149 * 150.24066 * 1 2 3 27 27 H 1.08004 * 120.00386 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.00363 * 179.76462 * 4 3 2 29 29 H 1.07997 * 119.99874 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.46816 * 59.99784 * 9 7 6 31 31 H 1.08998 * 109.47032 * 179.97438 * 9 7 6 32 32 H 1.08992 * 109.47088 * 300.00061 * 9 7 6 33 33 H 1.08994 * 109.46839 * 299.99818 * 13 11 10 34 34 H 1.09008 * 109.47012 * 59.99669 * 13 11 10 35 35 H 0.97003 * 119.99824 * 180.02562 * 18 17 15 36 36 H 1.08002 * 120.00200 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0054 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1969 -0.0008 7 6 4.3342 -2.5020 -0.0012 8 1 3.7075 -3.2832 -0.4317 9 6 4.7036 -2.8781 1.4351 10 8 5.5442 -2.3620 -0.7914 11 6 5.9972 -3.4623 -1.4124 12 8 5.4021 -4.5078 -1.2999 13 6 7.2481 -3.3938 -2.2500 14 16 7.5966 -5.0267 -2.9488 15 6 9.0655 -4.6656 -3.8525 16 1 9.4706 -3.6644 -3.8469 17 6 9.7021 -5.6679 -4.5713 18 7 9.2081 -6.8880 -4.5784 19 14 11.2590 -5.2850 -5.5299 20 1 12.4422 -5.5009 -4.6590 21 1 11.3448 -6.1792 -6.7124 22 1 11.2275 -3.8703 -5.9805 23 6 2.1980 -1.1969 0.0050 24 1 -0.3634 0.0042 1.0277 25 1 -0.3634 0.8878 -0.5175 26 1 -0.3633 -0.8921 -0.5101 27 1 1.6583 2.1327 0.0004 28 1 4.1204 2.1327 -0.0092 29 1 5.3516 0.0001 -0.0108 30 1 3.7952 -2.9832 2.0282 31 1 5.2482 -3.8222 1.4348 32 1 5.3301 -2.0969 1.8655 33 1 7.1058 -2.6755 -3.0574 34 1 8.0857 -3.0792 -1.6273 35 1 9.6531 -7.5885 -5.0805 36 1 1.6581 -2.1323 0.0086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121834868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:41 Heat of formation + Delta-G solvation = -76.263028 kcal Electronic energy + Delta-G solvation = -18526.754092 eV Core-core repulsion = 15487.718373 eV Total energy + Delta-G solvation = -3039.035719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.39813 -39.32143 -36.37403 -33.56539 -32.48542 -32.37142 -29.93687 -29.15906 -27.09748 -25.56969 -24.23089 -22.21233 -21.44935 -19.93419 -17.97916 -17.19166 -16.83720 -15.96740 -15.83726 -15.33957 -14.84782 -14.70957 -14.18326 -14.06833 -13.66969 -13.58227 -13.23448 -12.96755 -12.68101 -12.47918 -12.45783 -12.10990 -11.97139 -11.57859 -11.27746 -11.10161 -11.06898 -10.89125 -10.79937 -10.49689 -9.99397 -9.90207 -9.11573 -8.98709 -8.76652 -8.35921 -6.60227 -6.27384 -3.99939 1.12777 1.22508 2.64719 2.66994 3.20548 3.23752 3.28543 3.48966 3.61291 4.14763 4.43181 4.63351 4.72157 4.93081 5.00150 5.05627 5.08517 5.13865 5.15522 5.32107 5.35077 5.40486 5.45879 5.57756 5.71303 5.74445 5.78296 5.83963 5.95926 6.05126 6.08675 6.30854 6.38053 6.42250 6.76460 6.83182 7.55360 8.18039 8.30347 9.18142 10.80126 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.034331 B = 0.003110 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.396034 B = 9001.132252 C = 9276.642549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.120 4.120 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.081 4.081 7 C 0.125 3.875 8 H 0.094 0.906 9 C -0.162 4.162 10 O -0.353 6.353 11 C 0.480 3.520 12 O -0.488 6.488 13 C -0.129 4.129 14 S -0.058 6.058 15 C -0.536 4.536 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.921 3.079 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.271 1.271 23 C -0.109 4.109 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.269 0.731 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.540 15.096 10.886 23.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.116 4.116 6 C -0.081 4.081 7 C 0.070 3.930 8 H 0.112 0.888 9 C -0.220 4.220 10 O -0.271 6.271 11 C 0.321 3.679 12 O -0.373 6.373 13 C -0.276 4.276 14 S 0.168 5.832 15 C -0.684 4.684 16 H 0.094 0.906 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.748 3.252 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.196 1.196 23 C -0.127 4.127 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.147 0.853 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.305 13.614 10.986 22.598 hybrid contribution 1.632 1.327 -0.722 2.224 sum -12.673 14.941 10.263 22.117 Atomic orbital electron populations 1.20781 0.91083 1.02869 1.02279 1.19843 0.96064 0.92939 1.00103 1.21055 0.94336 0.97425 1.00994 1.21166 0.94244 0.98058 1.00194 1.21057 1.00624 0.91490 0.98412 1.19657 0.93329 0.94118 1.01016 1.21361 0.84768 0.95216 0.91640 0.88836 1.22160 1.02726 1.02705 0.94366 1.86568 1.41752 1.38990 1.59816 1.23311 0.85906 0.81405 0.77254 1.90652 1.57030 1.30449 1.59178 1.23300 0.94487 1.08864 1.00990 1.85407 1.34151 1.02315 1.61334 1.22845 1.11329 0.98990 1.35228 0.90593 1.25006 0.98117 0.94391 0.96011 1.70012 1.39225 1.01130 1.39887 0.86121 0.81600 0.78472 0.79056 1.20188 1.20707 1.19575 1.20832 0.92933 0.98003 1.00905 0.91212 0.91543 0.91445 0.86160 0.85882 0.85263 0.90817 0.91172 0.91478 0.87952 0.87926 0.92071 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.09 -0.87 5.88 -104.63 -0.62 -1.48 16 3 C -0.12 -1.12 9.70 -39.58 -0.38 -1.51 16 4 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 5 C -0.10 -1.14 9.35 -39.58 -0.37 -1.51 16 6 C -0.08 -1.00 5.01 -104.62 -0.52 -1.52 16 7 C 0.13 1.73 2.77 -27.88 -0.08 1.65 16 8 H 0.09 1.37 7.07 -51.93 -0.37 1.01 16 9 C -0.16 -1.93 9.53 37.16 0.35 -1.58 16 10 O -0.35 -5.74 9.03 -39.24 -0.35 -6.09 16 11 C 0.48 9.30 7.95 36.01 0.29 9.59 16 12 O -0.49 -10.70 15.08 -18.75 -0.28 -10.98 16 13 C -0.13 -2.64 6.27 36.01 0.23 -2.42 16 14 S -0.06 -1.56 20.58 -107.50 -2.21 -3.78 16 15 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 16 H 0.08 2.02 7.80 -52.48 -0.41 1.61 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -25.82 13.22 55.49 0.73 -25.08 16 19 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 C -0.11 -1.18 9.34 -39.58 -0.37 -1.55 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 26 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 28 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.13 1.48 7.62 -52.49 -0.40 1.08 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.97 8.14 -51.92 -0.42 1.54 16 34 H 0.10 1.95 8.14 -51.91 -0.42 1.52 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 329.63 15.07 4.97 4.97 Total: -1.00 -32.22 329.63 -8.44 -40.66 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.96 Total: -0.74 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -1.31 Total: -15.12 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.73 Total: -25.08 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.64 Total: -17.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.22 -8.44 -40.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121834868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.606 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds