Wall clock time and date at job start Tue Mar 31 2020 01:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36011 * 117.00244 * 2 1 4 4 C 1.37889 * 120.06018 * 359.72595 * 3 2 1 5 5 C 1.40198 * 119.72480 * 179.77644 * 4 3 2 6 6 C 1.46685 * 120.07927 * 180.24869 * 5 4 3 7 7 C 1.50699 * 120.00260 * 180.24569 * 6 5 4 8 8 O 1.21322 * 120.00339 * 0.25251 * 6 5 4 9 9 C 1.40097 * 119.84249 * 0.50167 * 5 4 3 10 10 C 1.36537 * 120.12544 * 359.74808 * 9 5 4 11 11 C 1.39214 * 120.27873 * 0.02562 * 10 9 5 12 12 S 1.76207 * 119.92528 * 179.97438 * 11 10 9 13 13 C 1.81399 * 102.99776 * 0.02562 * 12 11 10 14 14 C 1.52999 * 109.47145 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47307 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99899 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99757 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99924 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99643 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47073 * 90.00326 * 19 17 15 21 21 H 1.48503 * 109.47461 * 210.00217 * 19 17 15 22 22 H 1.48498 * 109.47425 * 330.00404 * 19 17 15 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99837 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99958 * 1 2 3 26 26 H 1.08002 * 120.13848 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.47383 * 90.00026 * 7 6 5 28 28 H 1.09003 * 109.47842 * 210.00029 * 7 6 5 29 29 H 1.09007 * 109.47096 * 330.00703 * 7 6 5 30 30 H 1.08002 * 119.93584 * 179.73201 * 9 5 4 31 31 H 1.08002 * 119.86327 * 179.97438 * 10 9 5 32 32 H 1.08999 * 109.47196 * 300.00292 * 13 12 11 33 33 H 1.09004 * 109.47143 * 60.00225 * 13 12 11 34 34 H 1.08999 * 109.47501 * 300.00337 * 14 13 12 35 35 H 1.09004 * 109.46728 * 60.00201 * 14 13 12 36 36 H 0.96999 * 119.99530 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.2968 2.3691 -0.0057 5 6 1.9407 3.6145 -0.0009 6 6 1.1507 4.8505 -0.0014 7 6 1.8445 6.1882 -0.0019 8 8 -0.0613 4.7959 -0.0014 9 6 3.3403 3.6758 -0.0010 10 6 4.0765 2.5259 -0.0006 11 6 3.4426 1.2865 -0.0005 12 16 4.4019 -0.1916 -0.0007 13 6 6.1066 0.4285 0.0000 14 6 7.0790 -0.7528 0.0007 15 6 8.4952 -0.2377 0.0006 16 1 8.6830 0.8258 0.0006 17 6 9.5512 -1.1243 0.0016 18 7 9.3224 -2.4194 0.0022 19 14 11.3066 -0.4859 0.0008 20 1 11.7719 -0.3151 1.4007 21 1 12.1863 -1.4569 -0.6981 22 1 11.3574 0.8220 -0.7007 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 0.2181 2.3163 -0.0098 27 1 2.0119 6.5104 -1.0296 28 1 1.2218 6.9208 0.5116 29 1 2.8020 6.1012 0.5120 30 1 3.8378 4.6343 -0.0017 31 1 5.1553 2.5781 -0.0011 32 1 6.2727 1.0358 -0.8897 33 1 6.2722 1.0353 0.8903 34 1 6.9127 -1.3598 0.8906 35 1 6.9135 -1.3600 -0.8894 36 1 10.0653 -3.0431 0.0025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122798096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:05 Heat of formation + Delta-G solvation = -78.779181 kcal Electronic energy + Delta-G solvation = -18530.836811 eV Core-core repulsion = 15491.691984 eV Total energy + Delta-G solvation = -3039.144827 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43383 -40.09885 -38.22203 -35.80674 -33.17645 -32.83773 -31.71910 -30.28729 -28.18301 -27.32998 -25.20400 -23.65901 -22.65124 -21.17132 -19.22292 -18.68939 -17.96005 -17.46358 -16.85609 -16.83242 -16.52746 -15.94179 -15.85556 -15.64753 -15.55226 -15.20807 -14.65538 -14.24826 -13.88803 -13.74136 -13.35821 -13.09733 -12.98649 -12.93320 -12.72156 -12.46989 -12.27156 -12.21845 -12.10378 -11.71575 -11.40622 -10.99271 -10.80770 -10.79951 -10.58936 -9.68078 -8.36060 -8.22220 -6.35584 -0.59124 0.30270 0.51387 1.28763 1.43778 1.45159 1.55314 1.56824 2.24279 2.42127 2.61472 3.06508 3.12032 3.63067 3.96848 3.99227 4.14911 4.20251 4.27720 4.29927 4.30408 4.35432 4.55350 4.62509 4.65932 4.70955 4.82259 4.97679 5.02086 5.17206 5.29978 5.37527 5.46417 5.56264 5.73708 6.10299 6.23987 6.49475 6.78669 7.34244 8.89761 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.023100 B = 0.003663 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.855078 B = 7642.776718 C = 8823.580201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.329 6.329 3 C 0.112 3.888 4 C -0.138 4.138 5 C -0.161 4.161 6 C 0.402 3.598 7 C -0.195 4.195 8 O -0.503 6.503 9 C -0.067 4.067 10 C -0.121 4.121 11 C -0.096 4.096 12 S -0.135 6.135 13 C -0.075 4.075 14 C 0.043 3.957 15 C -0.539 4.539 16 H 0.073 0.927 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.972 3.028 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.258 1.258 23 H 0.120 0.880 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.147 0.853 27 H 0.118 0.882 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.179 0.821 31 H 0.147 0.853 32 H 0.089 0.911 33 H 0.089 0.911 34 H -0.002 1.002 35 H -0.002 1.002 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.089 15.718 -0.094 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.061 3.939 4 C -0.159 4.159 5 C -0.166 4.166 6 C 0.283 3.717 7 C -0.252 4.252 8 O -0.382 6.382 9 C -0.087 4.087 10 C -0.146 4.146 11 C -0.210 4.210 12 S 0.114 5.886 13 C -0.223 4.223 14 C 0.004 3.996 15 C -0.579 4.579 16 H 0.091 0.909 17 C -0.197 4.197 18 N -0.572 5.572 19 Si 0.796 3.204 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.181 1.181 23 H 0.138 0.862 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.165 0.835 27 H 0.136 0.864 28 H 0.112 0.888 29 H 0.130 0.870 30 H 0.197 0.803 31 H 0.165 0.835 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.813 14.059 -0.097 21.159 hybrid contribution 0.986 0.711 0.012 1.216 sum -14.827 14.771 -0.086 20.929 Atomic orbital electron populations 1.23363 0.76305 1.05709 1.02165 1.86172 1.23414 1.26061 1.88650 1.18384 0.90153 0.85478 0.99914 1.21486 1.00756 0.90981 1.02711 1.20577 0.95066 0.94254 1.06659 1.22894 0.87990 0.91746 0.69026 1.22292 1.03466 0.92931 1.06482 1.90530 1.18107 1.90607 1.38959 1.21374 0.91729 0.99596 0.95990 1.21077 1.01333 0.90360 1.01785 1.21806 0.93949 0.98384 1.06886 1.86048 1.02521 1.09699 1.90350 1.23755 0.90786 1.02625 1.05102 1.18688 0.92875 0.92159 0.95858 1.21528 0.90977 0.93878 1.51476 0.90894 1.26024 1.04395 0.94926 0.94392 1.70115 1.33344 1.02771 1.51006 0.85343 0.78046 0.78498 0.78535 1.19735 1.21074 1.18136 0.86155 0.91733 0.91736 0.83536 0.86388 0.88788 0.87024 0.80343 0.83534 0.89208 0.89204 0.98320 0.98313 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.33 -9.76 9.87 -93.68 -0.92 -10.69 16 3 C 0.11 3.33 6.68 22.57 0.15 3.48 16 4 C -0.14 -3.51 8.58 22.66 0.19 -3.31 16 5 C -0.16 -3.49 5.87 -20.14 -0.12 -3.60 16 6 C 0.40 7.70 7.21 27.89 0.20 7.90 16 7 C -0.20 -1.84 9.74 71.24 0.69 -1.15 16 8 O -0.50 -13.18 17.08 -3.16 -0.05 -13.24 16 9 C -0.07 -1.28 9.30 22.32 0.21 -1.07 16 10 C -0.12 -3.09 9.29 22.11 0.21 -2.89 16 11 C -0.10 -3.05 6.14 22.88 0.14 -2.91 16 12 S -0.13 -5.17 21.40 -56.49 -1.21 -6.38 16 13 C -0.07 -2.99 4.27 71.98 0.31 -2.68 16 14 C 0.04 2.22 4.98 29.85 0.15 2.37 16 15 C -0.54 -29.28 9.11 25.60 0.23 -29.04 16 16 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 17 C 0.00 0.06 5.46 84.66 0.46 0.53 16 18 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 19 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 23 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 1.10 7.65 -2.39 -0.02 1.08 16 25 H 0.06 1.10 7.67 -2.38 -0.02 1.08 16 26 H 0.15 3.41 5.88 -2.91 -0.02 3.39 16 27 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.11 0.57 6.45 -2.38 -0.02 0.55 16 30 H 0.18 1.78 6.33 -2.91 -0.02 1.76 16 31 H 0.15 3.53 5.84 -2.91 -0.02 3.52 16 32 H 0.09 3.32 7.74 -2.39 -0.02 3.30 16 33 H 0.09 3.32 7.74 -2.39 -0.02 3.30 16 34 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -70.91 321.01 5.15 -65.75 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.09 Total: 6.57 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 3.94 Total: -30.91 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.67 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.98 Total: -23.92 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -1.21 Total: -6.38 kcal Total: -70.91 5.15 -65.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122798096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.026 kcal (2) G-P(sol) polarization free energy of solvation -70.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds