Wall clock time and date at job start Tue Mar 31 2020 01:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.46900 * 2 1 4 4 C 1.50697 * 109.46900 * 239.99760 * 2 1 3 5 5 H 1.08000 * 120.00434 * 239.99988 * 4 2 1 6 6 C 1.37879 * 119.99768 * 60.00585 * 4 2 1 7 7 N 1.31513 * 120.00156 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99977 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46915 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47219 * 119.99680 * 8 6 4 11 11 H 1.48494 * 109.47153 * 239.99713 * 8 6 4 12 12 N 1.46506 * 109.46742 * 120.00037 * 2 1 3 13 13 C 1.34773 * 120.00219 * 274.99657 * 12 2 1 14 14 O 1.21589 * 119.99728 * 0.02562 * 13 12 2 15 15 C 1.47536 * 120.00141 * 180.02562 * 13 12 2 16 16 C 1.39700 * 120.18839 * 359.97438 * 15 13 12 17 17 C 1.37790 * 119.90608 * 180.02562 * 16 15 13 18 18 C 1.38547 * 120.29948 * 359.97438 * 17 16 15 19 19 C 1.38055 * 120.39174 * 0.05081 * 18 17 16 20 20 N 1.48020 * 119.95895 * 179.97438 * 19 18 17 21 21 O 1.21803 * 119.99894 * 359.97438 * 20 19 18 22 22 O 1.21799 * 119.99903 * 179.72329 * 20 19 18 23 23 C 1.38708 * 120.08162 * 0.24252 * 19 18 17 24 24 O 1.35654 * 120.14835 * 179.70927 * 23 19 18 25 25 H 1.08996 * 109.46877 * 59.99636 * 1 2 3 26 26 H 1.08993 * 109.46900 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46738 * 300.00044 * 1 2 3 28 28 H 0.97003 * 120.00067 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99297 * 95.00234 * 12 2 1 30 30 H 1.07997 * 120.05312 * 359.97438 * 16 15 13 31 31 H 1.08001 * 119.85252 * 180.02562 * 17 16 15 32 32 H 1.07998 * 119.80331 * 180.02562 * 18 17 16 33 33 H 0.96699 * 113.99949 * 90.00564 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2857 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0184 2.3572 14 8 1.8576 1.1613 2.4119 15 6 2.6393 -0.7138 3.5617 16 6 2.9726 -2.0692 3.5034 17 6 3.4313 -2.7130 4.6320 18 6 3.5642 -2.0221 5.8255 19 6 3.2380 -0.6825 5.8972 20 7 3.3832 0.0462 7.1774 21 8 3.7899 -0.5362 8.1668 22 8 3.1004 1.2292 7.2402 23 6 2.7690 -0.0200 4.7724 24 8 2.4424 1.2947 4.8427 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7083 1.1610 -3.4844 29 1 2.2490 -1.6318 1.1526 30 1 2.8702 -2.6119 2.5754 31 1 3.6890 -3.7608 4.5859 32 1 3.9249 -2.5345 6.7051 33 1 3.1759 1.8932 4.6457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127941255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:58 Heat of formation + Delta-G solvation = -53.501022 kcal Electronic energy + Delta-G solvation = -21426.025751 eV Core-core repulsion = 17841.683852 eV Total energy + Delta-G solvation = -3584.341899 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.29264 -40.45080 -38.39077 -37.31322 -36.40081 -34.94152 -32.92304 -32.01937 -30.69767 -28.87213 -26.56776 -25.39039 -24.32290 -22.70216 -21.46978 -20.07683 -19.35469 -18.77569 -18.38628 -17.59801 -17.34686 -16.37528 -16.14322 -15.67973 -15.18899 -14.93154 -14.47793 -14.12018 -13.49586 -13.00340 -12.87792 -12.59120 -12.42057 -11.84010 -11.64982 -11.58330 -11.20687 -11.16718 -11.07997 -10.89584 -10.84981 -10.42075 -10.35533 -9.90407 -9.38014 -9.32964 -9.17171 -8.68482 -8.12755 -6.23846 -4.34376 -0.35418 0.35331 1.13201 1.25777 2.63535 3.15823 3.23529 3.25624 3.45743 3.59567 3.74623 4.17343 4.24591 4.40137 4.49221 4.61346 4.91004 5.08961 5.18225 5.36451 5.56324 5.65831 5.86852 6.28294 6.69649 6.82934 7.00652 7.23120 7.34689 7.38896 7.54720 7.58499 7.76366 8.01425 8.40867 8.60787 8.84732 9.33367 10.82087 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.035268 B = 0.003909 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.729424 B = 7161.338926 C = 7698.167129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.698 5.698 13 C 0.542 3.458 14 O -0.525 6.525 15 C -0.153 4.153 16 C -0.024 4.024 17 C -0.136 4.136 18 C -0.029 4.029 19 C -0.090 4.090 20 N 0.034 4.966 21 O -0.178 6.178 22 O -0.137 6.137 23 C 0.235 3.765 24 O -0.450 6.450 25 H 0.092 0.908 26 H 0.027 0.973 27 H 0.016 0.984 28 H 0.265 0.735 29 H 0.387 0.613 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.930 -8.191 12.582 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.070 0.930 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.347 5.347 13 C 0.326 3.674 14 O -0.403 6.403 15 C -0.158 4.158 16 C -0.043 4.043 17 C -0.154 4.154 18 C -0.048 4.048 19 C -0.174 4.174 20 N 0.553 4.447 21 O -0.388 6.388 22 O -0.358 6.358 23 C 0.185 3.815 24 O -0.263 6.263 25 H 0.111 0.889 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.175 0.825 33 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 5.014 -7.757 11.968 15.118 hybrid contribution 0.832 -0.623 -0.652 1.227 sum 5.847 -8.381 11.316 15.247 Atomic orbital electron populations 1.22093 0.98148 0.99273 1.01178 1.18848 0.91235 0.94074 0.79473 0.93019 1.21201 1.32823 1.13406 0.90191 0.91977 1.24889 0.94694 0.94912 0.99117 1.69905 1.35550 1.22328 1.23997 0.86373 0.78644 0.79487 0.82467 1.19736 1.20786 1.20796 1.46522 1.64480 1.13477 1.10213 1.17718 0.79936 0.87039 0.82745 1.90817 1.50077 1.14943 1.84433 1.20913 1.05163 0.95110 0.94613 1.21853 0.90173 0.92596 0.99636 1.21142 1.01858 1.01400 0.91022 1.21130 0.92993 0.90486 1.00178 1.21636 1.15523 0.94902 0.85370 1.43362 0.97990 1.01194 1.02110 1.94516 1.48256 1.69998 1.26002 1.94598 1.51688 0.98147 1.91331 1.18156 0.87862 0.86925 0.88569 1.84758 1.39197 1.10839 1.91462 0.88917 0.95373 0.96480 0.92456 0.77945 0.83017 0.82820 0.82462 0.72850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.26 37.16 0.34 -3.20 16 2 C 0.26 6.35 2.56 -69.08 -0.18 6.18 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.54 -13.42 8.73 -34.44 -0.30 -13.72 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -23.89 11.32 55.43 0.63 -23.26 16 8 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 9 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.70 -13.26 5.02 -55.97 -0.28 -13.54 16 13 C 0.54 10.08 7.73 -12.47 -0.10 9.98 16 14 O -0.52 -11.78 14.82 -16.59 -0.25 -12.03 16 15 C -0.15 -2.14 5.89 -104.85 -0.62 -2.76 16 16 C -0.02 -0.23 9.53 -39.20 -0.37 -0.61 16 17 C -0.14 -1.02 10.02 -39.63 -0.40 -1.42 16 18 C -0.03 -0.26 9.54 -39.53 -0.38 -0.64 16 19 C -0.09 -1.13 6.86 -79.84 -0.55 -1.68 16 20 N 0.03 0.49 4.45 34.02 0.15 0.64 16 21 O -0.18 -2.50 18.44 -29.46 -0.54 -3.05 16 22 O -0.14 -2.12 17.24 -36.49 -0.63 -2.75 16 23 C 0.23 3.31 6.70 -38.70 -0.26 3.05 16 24 O -0.45 -6.90 9.59 -49.69 -0.48 -7.38 16 25 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.39 6.01 6.57 -40.82 -0.27 5.74 16 30 H 0.15 1.18 6.40 -52.49 -0.34 0.84 16 31 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.16 1.10 7.59 -52.49 -0.40 0.70 16 33 H 0.41 4.84 9.06 45.56 0.41 5.26 16 LS Contribution 297.53 15.07 4.48 4.48 Total: -1.00 -31.78 297.53 -6.94 -38.72 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -2.11 Total: 6.65 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.90 Total: -3.17 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.50 Total: -36.15 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -1.89 Total: -25.20 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.78 -6.94 -38.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127941255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.782 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds