Wall clock time and date at job start Tue Mar 31 2020 01:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.46900 * 2 1 4 4 C 1.50697 * 109.46900 * 239.99760 * 2 1 3 5 5 H 1.08000 * 120.00434 * 239.99988 * 4 2 1 6 6 C 1.37879 * 119.99768 * 60.00585 * 4 2 1 7 7 N 1.31513 * 120.00156 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99977 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46915 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47219 * 119.99680 * 8 6 4 11 11 H 1.48494 * 109.47153 * 239.99713 * 8 6 4 12 12 N 1.46506 * 109.46742 * 120.00037 * 2 1 3 13 13 C 1.34773 * 120.00219 * 274.99657 * 12 2 1 14 14 O 1.21589 * 119.99728 * 0.02562 * 13 12 2 15 15 C 1.47536 * 120.00141 * 180.02562 * 13 12 2 16 16 C 1.39700 * 120.18839 * 359.97438 * 15 13 12 17 17 C 1.37790 * 119.90608 * 180.02562 * 16 15 13 18 18 C 1.38547 * 120.29948 * 359.97438 * 17 16 15 19 19 C 1.38055 * 120.39174 * 0.05081 * 18 17 16 20 20 N 1.48020 * 119.95895 * 179.97438 * 19 18 17 21 21 O 1.21803 * 119.99894 * 359.97438 * 20 19 18 22 22 O 1.21799 * 119.99903 * 179.72329 * 20 19 18 23 23 C 1.38708 * 120.08162 * 0.24252 * 19 18 17 24 24 O 1.35654 * 120.14835 * 179.70927 * 23 19 18 25 25 H 1.08996 * 109.46877 * 59.99636 * 1 2 3 26 26 H 1.08993 * 109.46900 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46738 * 300.00044 * 1 2 3 28 28 H 0.97003 * 120.00067 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99297 * 95.00234 * 12 2 1 30 30 H 1.07997 * 120.05312 * 359.97438 * 16 15 13 31 31 H 1.08001 * 119.85252 * 180.02562 * 17 16 15 32 32 H 1.07998 * 119.80331 * 180.02562 * 18 17 16 33 33 H 0.96699 * 113.99949 * 90.00564 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2857 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0184 2.3572 14 8 1.8576 1.1613 2.4119 15 6 2.6393 -0.7138 3.5617 16 6 2.9726 -2.0692 3.5034 17 6 3.4313 -2.7130 4.6320 18 6 3.5642 -2.0221 5.8255 19 6 3.2380 -0.6825 5.8972 20 7 3.3832 0.0462 7.1774 21 8 3.7899 -0.5362 8.1668 22 8 3.1004 1.2292 7.2402 23 6 2.7690 -0.0200 4.7724 24 8 2.4424 1.2947 4.8427 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7083 1.1610 -3.4844 29 1 2.2490 -1.6318 1.1526 30 1 2.8702 -2.6119 2.5754 31 1 3.6890 -3.7608 4.5859 32 1 3.9249 -2.5345 6.7051 33 1 3.1759 1.8932 4.6457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127941255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:58 Heat of formation + Delta-G solvation = -75.190267 kcal Electronic energy + Delta-G solvation = -21426.966267 eV Core-core repulsion = 17841.683852 eV Total energy + Delta-G solvation = -3585.282415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.33854 -41.59319 -39.77547 -38.31825 -37.48309 -36.71735 -34.52203 -33.28673 -31.70465 -30.55492 -27.57025 -27.36388 -25.52482 -23.64503 -22.98051 -21.57548 -20.62079 -19.88793 -19.38584 -18.83692 -18.63904 -17.60908 -17.48146 -16.92388 -16.73415 -16.04637 -15.95856 -15.46549 -15.01885 -14.49470 -13.86475 -13.75273 -13.69809 -13.39352 -13.00861 -12.89807 -12.76969 -12.74814 -12.62747 -12.30187 -12.29141 -12.11603 -11.93275 -11.12188 -10.90240 -10.82482 -10.61935 -10.25362 -9.81850 -8.18515 -6.36507 -1.32109 -0.59365 0.15691 0.27792 1.45865 1.47260 1.58649 1.63987 2.18650 2.36423 2.45530 2.66995 3.13006 3.34144 3.49397 3.64335 3.76987 3.96834 4.27882 4.54626 4.72996 4.75447 4.86899 4.90016 5.05968 5.08938 5.32392 5.38856 5.54830 5.64284 5.85296 6.06203 6.35701 6.47140 6.70185 6.82427 7.27916 7.43171 8.88132 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.035268 B = 0.003909 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.729424 B = 7161.338926 C = 7698.167129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.001 0.999 4 C -0.545 4.545 5 H 0.081 0.919 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.255 1.255 10 H -0.281 1.281 11 H -0.287 1.287 12 N -0.692 5.692 13 C 0.540 3.460 14 O -0.576 6.576 15 C -0.176 4.176 16 C -0.007 4.007 17 C -0.107 4.107 18 C -0.009 4.009 19 C -0.103 4.103 20 N 0.035 4.965 21 O -0.154 6.154 22 O -0.193 6.193 23 C 0.216 3.784 24 O -0.476 6.476 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.008 0.992 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.178 0.822 31 H 0.209 0.791 32 H 0.189 0.811 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.514 -12.665 13.024 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.019 0.981 4 C -0.583 4.583 5 H 0.099 0.901 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.178 1.178 10 H -0.207 1.207 11 H -0.213 1.213 12 N -0.342 5.342 13 C 0.327 3.673 14 O -0.457 6.457 15 C -0.180 4.180 16 C -0.026 4.026 17 C -0.125 4.125 18 C -0.028 4.028 19 C -0.188 4.188 20 N 0.551 4.449 21 O -0.373 6.373 22 O -0.401 6.401 23 C 0.167 3.833 24 O -0.290 6.290 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.196 0.804 31 H 0.226 0.774 32 H 0.207 0.793 33 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 6.585 -12.178 12.407 18.590 hybrid contribution 0.400 0.637 -0.689 1.020 sum 6.985 -11.541 11.718 17.869 Atomic orbital electron populations 1.21923 0.98356 0.99671 0.99505 1.18406 0.91065 0.92126 0.81596 0.98110 1.21559 1.32639 1.13704 0.90371 0.90135 1.25815 0.94831 0.95529 1.02441 1.70065 1.36988 1.24036 1.24600 0.85276 0.78026 0.78586 0.78312 1.17802 1.20698 1.21322 1.46138 1.64687 1.14275 1.09120 1.18349 0.78650 0.86576 0.83728 1.90788 1.52097 1.17417 1.85382 1.20454 1.08394 0.96935 0.92257 1.22219 0.88133 0.90440 1.01791 1.21711 0.98776 1.03265 0.88756 1.21703 0.90457 0.88607 1.02070 1.21758 1.17120 0.96038 0.83862 1.43621 0.97496 1.01115 1.02711 1.94468 1.46665 1.69606 1.26593 1.94621 1.54415 0.99140 1.91891 1.18357 0.89013 0.86406 0.89508 1.84716 1.40325 1.12219 1.91698 0.91433 0.93711 0.97280 0.92581 0.75595 0.80444 0.77379 0.79336 0.72215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.67 9.26 71.99 0.67 -6.00 16 2 C 0.27 13.34 2.56 44.25 0.11 13.45 16 3 H 0.00 0.06 7.58 -2.39 -0.02 0.04 16 4 C -0.54 -26.91 8.73 25.60 0.22 -26.69 16 5 H 0.08 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -51.15 11.32 21.45 0.24 -50.91 16 8 Si 0.97 39.77 29.54 68.60 2.03 41.80 16 9 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 10 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 12 N -0.69 -26.05 5.02 -449.26 -2.25 -28.31 16 13 C 0.54 20.50 7.73 86.70 0.67 21.17 16 14 O -0.58 -27.53 14.82 16.92 0.25 -27.28 16 15 C -0.18 -4.72 5.89 -20.01 -0.12 -4.84 16 16 C -0.01 -0.11 9.53 22.52 0.21 0.11 16 17 C -0.11 -0.92 10.02 22.24 0.22 -0.70 16 18 C -0.01 -0.13 9.54 22.30 0.21 0.09 16 19 C -0.10 -2.40 6.86 36.44 0.25 -2.15 16 20 N 0.04 0.99 4.45 -46.30 -0.21 0.78 16 21 O -0.15 -4.04 18.44 18.88 0.35 -3.69 16 22 O -0.19 -6.28 17.24 25.61 0.44 -5.83 16 23 C 0.22 6.11 6.70 22.84 0.15 6.26 16 24 O -0.48 -15.77 9.59 -60.04 -0.58 -16.34 16 25 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 26 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.41 11.68 6.57 -92.71 -0.61 11.07 16 30 H 0.18 1.77 6.40 -2.91 -0.02 1.75 16 31 H 0.21 -0.26 8.06 -2.91 -0.02 -0.28 16 32 H 0.19 1.43 7.59 -2.91 -0.02 1.40 16 33 H 0.42 11.28 9.06 -74.06 -0.67 10.61 16 Total: -1.00 -74.49 297.53 3.24 -71.25 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -0.09 Total: 16.68 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 3.06 Total: 1.86 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -2.22 Total: -78.43 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: 0.46 Total: -53.15 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -74.49 3.24 -71.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127941255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.944 kcal (2) G-P(sol) polarization free energy of solvation -74.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds