Wall clock time and date at job start Tue Mar 31 2020 00:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21670 * 119.99401 * 0.02562 * 13 12 2 15 15 C 1.46649 * 120.00337 * 180.02562 * 13 12 2 16 16 C 1.34630 * 119.99866 * 180.02562 * 15 13 12 17 17 C 1.47418 * 120.00084 * 179.97438 * 16 15 13 18 18 C 1.40179 * 120.93669 * 359.71749 * 17 16 15 19 19 C 1.37945 * 119.00059 * 179.77338 * 18 17 16 20 20 N 1.31917 * 120.93832 * 0.51657 * 19 18 17 21 21 C 1.31957 * 122.10194 * 359.73239 * 20 19 18 22 22 Cl 1.73600 * 119.56116 * 180.02562 * 21 20 19 23 23 C 1.38204 * 120.88602 * 0.02562 * 21 20 19 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 29 29 H 1.07997 * 119.99846 * 359.97438 * 15 13 12 30 30 H 1.08000 * 120.00401 * 0.02562 * 16 15 13 31 31 H 1.08001 * 120.50483 * 0.02562 * 18 17 16 32 32 H 1.08003 * 119.53155 * 180.22622 * 19 18 17 33 33 H 1.07995 * 120.52456 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8581 1.1623 -2.4117 15 6 2.6354 -0.7099 -3.5547 16 6 2.7644 -0.0381 -4.7143 17 6 3.2558 -0.7330 -5.9179 18 6 3.5999 -2.0913 -5.8759 19 6 4.0510 -2.7028 -7.0272 20 7 4.1698 -2.0256 -8.1530 21 6 3.8623 -0.7451 -8.2369 22 17 4.0435 0.0817 -9.7526 23 6 3.3980 -0.0533 -7.1342 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7082 1.1609 3.4844 28 1 2.2490 -1.6318 -1.1526 29 1 2.8922 -1.7577 -3.5061 30 1 2.5087 1.0101 -4.7625 31 1 3.5094 -2.6516 -4.9570 32 1 4.3150 -3.7499 -7.0054 33 1 3.1477 0.9945 -7.2096 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129348080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:03 Heat of formation + Delta-G solvation = 0.926014 kcal Electronic energy + Delta-G solvation = -18001.089463 eV Core-core repulsion = 14859.816863 eV Total energy + Delta-G solvation = -3141.272601 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.52628 -38.98589 -36.97348 -35.27440 -34.59623 -32.46437 -31.57254 -30.82222 -28.90105 -25.35388 -25.01705 -23.93414 -22.14758 -20.23732 -19.37031 -17.86806 -17.17096 -16.64516 -16.03239 -15.76171 -15.25541 -14.81922 -14.52656 -14.24961 -14.11189 -13.64967 -13.20959 -12.61506 -12.45619 -12.17273 -11.78281 -11.68827 -11.61471 -11.21081 -11.12919 -10.98905 -10.79813 -10.38818 -10.28481 -10.01835 -9.36568 -9.28259 -9.12496 -8.95616 -8.60647 -7.99596 -6.17314 -4.27248 0.20045 0.59623 1.48579 1.88778 3.22163 3.27793 3.28572 3.34625 3.81871 3.84727 4.14359 4.27951 4.43203 4.55164 4.59136 4.72657 5.14593 5.15378 5.21609 5.35097 5.52961 5.59479 6.09707 6.20943 6.28913 6.76801 6.89891 7.08132 7.35574 7.35681 7.48574 7.63155 7.84650 8.08779 8.55459 8.70370 8.99845 9.40253 10.88663 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.042830 B = 0.002708 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.587040 B =10338.572208 C =10757.347586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.698 5.698 13 C 0.525 3.475 14 O -0.553 6.553 15 C -0.153 4.153 16 C -0.069 4.069 17 C 0.005 3.995 18 C -0.163 4.163 19 C 0.122 3.878 20 N -0.484 5.484 21 C 0.176 3.824 22 Cl -0.033 7.033 23 C -0.142 4.142 24 H 0.015 0.985 25 H 0.091 0.909 26 H 0.027 0.973 27 H 0.266 0.734 28 H 0.390 0.610 29 H 0.128 0.872 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.168 0.832 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.994 -6.082 -18.188 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.344 5.344 13 C 0.311 3.689 14 O -0.434 6.434 15 C -0.175 4.175 16 C -0.089 4.089 17 C -0.004 4.004 18 C -0.183 4.183 19 C -0.035 4.035 20 N -0.196 5.196 21 C 0.012 3.988 22 Cl -0.004 7.004 23 C -0.163 4.163 24 H 0.034 0.966 25 H 0.110 0.890 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.223 0.777 29 H 0.145 0.855 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.185 0.815 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.005 -5.464 -18.903 20.303 hybrid contribution 0.146 -0.524 1.464 1.561 sum 5.151 -5.987 -17.439 19.144 Atomic orbital electron populations 1.22083 0.98283 0.99211 1.01020 1.18795 0.91142 0.94064 0.79866 0.93196 1.21168 1.32704 1.13334 0.90297 0.92065 1.24892 0.94756 0.94939 0.99096 1.69887 1.35654 1.22383 1.24097 0.86490 0.79178 0.79577 0.81743 1.20145 1.21088 1.20133 1.46499 1.63886 1.13568 1.10493 1.18274 0.79594 0.87116 0.83943 1.90779 1.51576 1.15724 1.85307 1.23435 0.99774 1.00474 0.93836 1.22151 0.96237 1.00527 0.89951 1.19423 0.94554 0.93207 0.93171 1.22562 1.00132 0.94821 1.00802 1.22608 0.94481 0.99919 0.86451 1.66901 1.16159 1.07323 1.29181 1.21506 0.98557 0.90519 0.88170 1.98412 1.95917 1.75487 1.30604 1.22059 1.01094 1.01993 0.91106 0.96585 0.89038 0.95390 0.92434 0.77708 0.85464 0.83839 0.83364 0.81463 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.26 37.16 0.34 -3.24 16 2 C 0.26 6.52 2.56 -69.08 -0.18 6.34 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.54 -13.87 8.73 -34.44 -0.30 -14.17 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.48 11.32 55.43 0.63 -23.85 16 8 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.70 -13.84 5.06 -56.26 -0.28 -14.13 16 13 C 0.52 9.91 7.72 -12.86 -0.10 9.81 16 14 O -0.55 -12.71 15.90 5.22 0.08 -12.63 16 15 C -0.15 -2.02 9.44 -37.47 -0.35 -2.37 16 16 C -0.07 -0.83 9.50 -37.12 -0.35 -1.18 16 17 C 0.00 0.05 5.90 -104.75 -0.62 -0.57 16 18 C -0.16 -1.42 9.48 -38.96 -0.37 -1.79 16 19 C 0.12 1.06 11.17 -17.62 -0.20 0.86 16 20 N -0.48 -5.36 10.31 -10.45 -0.11 -5.47 16 21 C 0.18 1.90 7.27 -17.51 -0.13 1.77 16 22 Cl -0.03 -0.32 29.10 -51.86 -1.51 -1.83 16 23 C -0.14 -1.42 9.67 -38.91 -0.38 -1.80 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.39 6.49 8.52 -40.82 -0.35 6.14 16 29 H 0.13 1.23 6.16 -52.49 -0.32 0.90 16 30 H 0.14 1.84 7.52 -52.49 -0.39 1.45 16 31 H 0.15 0.96 6.30 -52.49 -0.33 0.63 16 32 H 0.17 0.92 8.06 -52.48 -0.42 0.49 16 33 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 309.14 15.07 4.66 4.66 Total: -1.00 -30.99 309.14 -7.61 -38.61 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -3.34 Total: 4.13 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.72 Total: -4.67 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.23 Total: -43.44 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.51 Total: -1.83 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.99 -7.61 -38.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129348080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.532 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds