Wall clock time and date at job start Tue Mar 31 2020 00:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21670 * 119.99401 * 0.02562 * 13 12 2 15 15 C 1.46649 * 120.00337 * 180.02562 * 13 12 2 16 16 C 1.34630 * 119.99866 * 180.02562 * 15 13 12 17 17 C 1.47418 * 120.00084 * 179.97438 * 16 15 13 18 18 C 1.40179 * 120.93669 * 359.71749 * 17 16 15 19 19 C 1.37945 * 119.00059 * 179.77338 * 18 17 16 20 20 N 1.31917 * 120.93832 * 0.51657 * 19 18 17 21 21 C 1.31957 * 122.10194 * 359.73239 * 20 19 18 22 22 Cl 1.73600 * 119.56116 * 180.02562 * 21 20 19 23 23 C 1.38204 * 120.88602 * 0.02562 * 21 20 19 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 29 29 H 1.07997 * 119.99846 * 359.97438 * 15 13 12 30 30 H 1.08000 * 120.00401 * 0.02562 * 16 15 13 31 31 H 1.08001 * 120.50483 * 0.02562 * 18 17 16 32 32 H 1.08003 * 119.53155 * 180.22622 * 19 18 17 33 33 H 1.07995 * 120.52456 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8581 1.1623 -2.4117 15 6 2.6354 -0.7099 -3.5547 16 6 2.7644 -0.0381 -4.7143 17 6 3.2558 -0.7330 -5.9179 18 6 3.5999 -2.0913 -5.8759 19 6 4.0510 -2.7028 -7.0272 20 7 4.1698 -2.0256 -8.1530 21 6 3.8623 -0.7451 -8.2369 22 17 4.0435 0.0817 -9.7526 23 6 3.3980 -0.0533 -7.1342 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7082 1.1609 3.4844 28 1 2.2490 -1.6318 -1.1526 29 1 2.8922 -1.7577 -3.5061 30 1 2.5087 1.0101 -4.7625 31 1 3.5094 -2.6516 -4.9570 32 1 4.3150 -3.7499 -7.0054 33 1 3.1477 0.9945 -7.2096 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129348080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:03 Heat of formation + Delta-G solvation = -19.308297 kcal Electronic energy + Delta-G solvation = -18001.966889 eV Core-core repulsion = 14859.816863 eV Total energy + Delta-G solvation = -3142.150026 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.30282 -40.51520 -37.73328 -36.85610 -35.78979 -34.32617 -32.40285 -31.83766 -30.59625 -27.34560 -26.10775 -24.67669 -23.49995 -21.78581 -20.77529 -19.09632 -18.32782 -17.67544 -17.24311 -17.07245 -16.70125 -16.03468 -15.75873 -15.53337 -15.24401 -14.78690 -14.49543 -14.33965 -13.73508 -13.51303 -13.00445 -12.94315 -12.85420 -12.73711 -12.53548 -12.37425 -12.26786 -12.15264 -12.01972 -11.11914 -10.89489 -10.75856 -10.58362 -10.10417 -9.98437 -9.65277 -8.17059 -6.34819 -0.68400 -0.11480 0.74158 0.90356 1.46635 1.48438 1.56260 2.33329 2.36860 2.59313 2.70386 3.13657 3.36332 3.53914 3.80228 3.87430 3.89917 4.14915 4.35514 4.57413 4.72758 4.75304 4.78039 4.92361 5.08974 5.21110 5.34889 5.42602 5.45580 5.60260 5.69742 5.91343 6.09802 6.64175 6.72907 6.94735 7.32521 7.53191 8.89140 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.042830 B = 0.002708 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.587040 B =10338.572208 C =10757.347586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H -0.001 1.001 4 C -0.548 4.548 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.695 5.695 13 C 0.521 3.479 14 O -0.605 6.605 15 C -0.164 4.164 16 C -0.043 4.043 17 C -0.011 4.011 18 C -0.149 4.149 19 C 0.121 3.879 20 N -0.503 5.503 21 C 0.160 3.840 22 Cl -0.033 7.033 23 C -0.142 4.142 24 H 0.012 0.988 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.265 0.735 28 H 0.409 0.591 29 H 0.172 0.828 30 H 0.129 0.871 31 H 0.178 0.822 32 H 0.202 0.798 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.065 -8.849 -18.686 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.016 0.984 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.343 5.343 13 C 0.310 3.690 14 O -0.489 6.489 15 C -0.185 4.185 16 C -0.063 4.063 17 C -0.019 4.019 18 C -0.169 4.169 19 C -0.035 4.035 20 N -0.215 5.215 21 C -0.003 4.003 22 Cl -0.004 7.004 23 C -0.163 4.163 24 H 0.031 0.969 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.189 0.811 30 H 0.147 0.853 31 H 0.195 0.805 32 H 0.219 0.781 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.091 -8.270 -19.434 21.981 hybrid contribution -0.164 0.372 1.480 1.535 sum 5.927 -7.898 -17.954 20.490 Atomic orbital electron populations 1.21907 0.98241 0.99606 0.99595 1.18366 0.91180 0.91993 0.81969 0.98353 1.21533 1.32675 1.13671 0.90692 0.90532 1.25820 0.94870 0.95576 1.02419 1.70048 1.36960 1.23982 1.24691 0.85385 0.78651 0.78738 0.77489 1.19535 1.21398 1.18725 1.46194 1.64168 1.14354 1.09566 1.19115 0.78244 0.86607 0.85005 1.90753 1.53727 1.18237 1.86188 1.23171 1.01952 1.02170 0.91208 1.22150 0.93821 0.99914 0.90396 1.19327 0.96080 0.94194 0.92288 1.22899 0.98069 0.93926 1.01959 1.23216 0.93455 1.01236 0.85604 1.66939 1.16461 1.07518 1.30544 1.21605 0.99439 0.90805 0.88460 1.98407 1.95954 1.75526 1.30562 1.22189 1.00537 1.02574 0.90995 0.96902 0.91530 0.93867 0.92555 0.75522 0.81119 0.85339 0.80486 0.78094 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.70 9.26 71.98 0.67 -6.03 16 2 C 0.27 13.59 2.56 44.25 0.11 13.71 16 3 H 0.00 -0.09 7.58 -2.39 -0.02 -0.10 16 4 C -0.55 -28.14 8.73 25.60 0.22 -27.92 16 5 H 0.08 3.61 7.74 -2.91 -0.02 3.58 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -52.08 11.32 21.45 0.24 -51.83 16 8 Si 0.97 40.95 29.54 68.60 2.03 42.97 16 9 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 12 N -0.70 -27.22 5.06 -450.12 -2.28 -29.50 16 13 C 0.52 19.60 7.72 86.44 0.67 20.26 16 14 O -0.60 -28.79 15.90 -4.25 -0.07 -28.85 16 15 C -0.16 -3.95 9.44 23.64 0.22 -3.73 16 16 C -0.04 -0.96 9.50 23.86 0.23 -0.73 16 17 C -0.01 -0.20 5.90 -19.95 -0.12 -0.31 16 18 C -0.15 -2.00 9.48 22.67 0.22 -1.78 16 19 C 0.12 1.66 11.17 84.61 0.94 2.60 16 20 N -0.50 -9.93 10.31 -186.98 -1.93 -11.86 16 21 C 0.16 3.20 7.27 84.67 0.62 3.81 16 22 Cl -0.03 -0.62 29.10 -2.72 -0.08 -0.70 16 23 C -0.14 -2.63 9.67 22.70 0.22 -2.41 16 24 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 26 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.41 12.77 8.52 -92.71 -0.79 11.98 16 29 H 0.17 2.52 6.16 -2.91 -0.02 2.51 16 30 H 0.13 3.29 7.52 -2.91 -0.02 3.27 16 31 H 0.18 1.30 6.30 -2.91 -0.02 1.29 16 32 H 0.20 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -69.54 309.14 2.72 -66.82 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.36 Total: 14.35 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 4.45 Total: -1.40 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -3.97 Total: -93.19 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.07 Total: -28.85 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -69.54 2.72 -66.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129348080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.512 kcal (2) G-P(sol) polarization free energy of solvation -69.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds