Wall clock time and date at job start Tue Mar 31 2020 00:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46893 * 2 1 4 4 C 1.50704 * 109.46954 * 239.99948 * 2 1 3 5 5 H 1.08000 * 120.00277 * 245.45837 * 4 2 1 6 6 C 1.37876 * 119.99583 * 65.46028 * 4 2 1 7 7 N 1.31512 * 120.00249 * 9.56265 * 6 4 2 8 8 Si 1.86806 * 119.99767 * 189.55497 * 6 4 2 9 9 H 1.48500 * 109.46696 * 84.99516 * 8 6 4 10 10 H 1.48491 * 109.47132 * 204.99399 * 8 6 4 11 11 H 1.48502 * 109.47303 * 324.99956 * 8 6 4 12 12 N 1.46505 * 109.47189 * 120.00326 * 2 1 3 13 13 C 1.34776 * 119.99641 * 275.00039 * 12 2 1 14 14 O 1.21667 * 120.00041 * 359.97438 * 13 12 2 15 15 C 1.46658 * 119.99709 * 179.97438 * 13 12 2 16 16 C 1.34628 * 119.99784 * 180.27215 * 15 13 12 17 17 C 1.47413 * 120.00144 * 179.72464 * 16 15 13 18 18 C 1.40187 * 120.93651 * 359.72347 * 17 16 15 19 19 C 1.37941 * 118.99733 * 179.72525 * 18 17 16 20 20 N 1.31927 * 120.94336 * 0.56149 * 19 18 17 21 21 C 1.31948 * 122.09524 * 359.71062 * 20 19 18 22 22 Cl 1.73601 * 119.55614 * 180.02562 * 21 20 19 23 23 C 1.38202 * 120.89057 * 0.02562 * 21 20 19 24 24 H 1.09007 * 109.46919 * 183.68149 * 1 2 3 25 25 H 1.08999 * 109.46958 * 303.67597 * 1 2 3 26 26 H 1.08999 * 109.47460 * 63.67537 * 1 2 3 27 27 H 0.97001 * 119.99774 * 180.02562 * 7 6 4 28 28 H 0.96996 * 119.99773 * 94.99843 * 12 2 1 29 29 H 1.07994 * 119.99854 * 0.02562 * 15 13 12 30 30 H 1.08002 * 120.00377 * 359.72491 * 16 15 13 31 31 H 1.08003 * 120.50115 * 359.97438 * 18 17 16 32 32 H 1.08004 * 119.52953 * 180.24517 * 19 18 17 33 33 H 1.07997 * 120.52605 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5786 -1.6371 -1.1339 6 6 1.7945 -0.1773 -2.4796 7 7 1.2993 1.0356 -2.5935 8 14 2.1759 -1.1780 -4.0102 9 1 1.0239 -2.0609 -4.3241 10 1 2.4225 -0.2614 -5.1521 11 1 3.3844 -2.0073 -3.7711 12 7 2.0184 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8581 1.1623 2.4117 15 6 2.6354 -0.7099 3.5547 16 6 2.7588 -0.0396 4.7157 17 6 3.2438 -0.7362 5.9210 18 6 3.5768 -2.0973 5.8818 19 6 4.0322 -2.7077 7.0320 20 7 4.1455 -2.0319 8.1593 21 6 3.8383 -0.7515 8.2430 22 17 4.0132 0.0737 9.7603 23 6 3.3792 -0.0583 7.1391 24 1 -0.3633 -1.0256 0.0660 25 1 -0.3633 0.5698 0.8552 26 1 -0.3634 0.4557 -0.9211 27 1 1.1316 1.4105 -3.4723 28 1 2.2490 -1.6318 1.1525 29 1 2.8923 -1.7577 3.5061 30 1 2.5023 1.0084 4.7642 31 1 3.4820 -2.6587 4.9640 32 1 4.2949 -3.7551 7.0105 33 1 3.1299 0.9898 7.2141 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129348293.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:05 Heat of formation + Delta-G solvation = -20.874018 kcal Electronic energy + Delta-G solvation = -17996.046514 eV Core-core repulsion = 14853.828593 eV Total energy + Delta-G solvation = -3142.217921 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.30106 -40.51072 -37.73184 -36.83527 -35.78575 -34.31554 -32.40796 -31.85391 -30.66691 -27.30922 -26.11531 -24.67552 -23.51940 -21.79569 -20.77571 -19.09649 -18.31942 -17.67819 -17.23379 -17.06866 -16.69423 -16.00693 -15.76635 -15.53229 -15.24742 -14.78149 -14.48800 -14.31699 -13.82909 -13.52293 -13.05692 -12.91189 -12.90319 -12.68760 -12.53045 -12.37331 -12.36152 -12.13903 -12.01632 -11.16076 -10.86703 -10.75555 -10.56784 -10.10336 -9.98563 -9.65604 -8.20414 -6.33953 -0.68137 -0.11298 0.74297 0.90657 1.46264 1.47389 1.56903 2.33460 2.37501 2.59134 2.70619 3.12482 3.36446 3.54104 3.80406 3.87642 3.90145 4.15271 4.35791 4.57579 4.72110 4.73818 4.78226 4.88534 5.03527 5.20604 5.35112 5.42322 5.44985 5.60014 5.64090 5.89744 6.02995 6.64321 6.74784 6.95027 7.32558 7.53586 8.88968 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.043037 B = 0.002709 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.442806 B =10335.076723 C =10754.305124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.266 3.734 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.970 3.030 9 H -0.270 1.270 10 H -0.290 1.290 11 H -0.261 1.261 12 N -0.695 5.695 13 C 0.521 3.479 14 O -0.605 6.605 15 C -0.164 4.164 16 C -0.043 4.043 17 C -0.011 4.011 18 C -0.149 4.149 19 C 0.121 3.879 20 N -0.503 5.503 21 C 0.160 3.840 22 Cl -0.033 7.033 23 C -0.142 4.142 24 H 0.050 0.950 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.265 0.735 28 H 0.409 0.591 29 H 0.172 0.828 30 H 0.129 0.871 31 H 0.178 0.822 32 H 0.202 0.798 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.156 -9.435 18.831 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.162 3.838 3 H 0.021 0.979 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.794 3.206 9 H -0.195 1.195 10 H -0.216 1.216 11 H -0.185 1.185 12 N -0.342 5.342 13 C 0.310 3.690 14 O -0.489 6.489 15 C -0.185 4.185 16 C -0.063 4.063 17 C -0.019 4.019 18 C -0.168 4.168 19 C -0.035 4.035 20 N -0.215 5.215 21 C -0.003 4.003 22 Cl -0.005 7.005 23 C -0.163 4.163 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.189 0.811 30 H 0.146 0.854 31 H 0.195 0.805 32 H 0.219 0.781 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.211 -8.841 19.586 22.112 hybrid contribution -0.231 0.386 -1.524 1.589 sum 4.980 -8.456 18.062 20.556 Atomic orbital electron populations 1.21847 0.98299 0.99529 0.99112 1.18385 0.90985 0.92398 0.82000 0.97935 1.21527 1.37160 1.09087 0.90795 0.90458 1.25821 0.94778 0.95452 1.02496 1.70136 1.45135 1.15590 1.24974 0.85392 0.79067 0.78267 0.77833 1.19512 1.21598 1.18537 1.46180 1.64185 1.14354 1.09527 1.19115 0.78248 0.86597 0.85014 1.90756 1.53715 1.18234 1.86185 1.23174 1.01936 1.02173 0.91180 1.22148 0.93862 0.99907 0.90404 1.19328 0.96109 0.94181 0.92260 1.22900 0.98080 0.93885 1.01977 1.23217 0.93438 1.01259 0.85604 1.66941 1.16453 1.07539 1.30531 1.21601 0.99470 0.90803 0.88431 1.98407 1.96007 1.75612 1.30437 1.22188 1.00565 1.02598 0.90965 0.93062 0.96477 0.93277 0.92583 0.75502 0.81092 0.85366 0.80464 0.78091 0.82300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 9.36 71.98 0.67 -5.59 16 2 C 0.27 13.39 2.42 44.25 0.11 13.50 16 3 H 0.00 0.16 7.52 -2.39 -0.02 0.15 16 4 C -0.55 -28.09 8.66 25.60 0.22 -27.87 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.79 5.17 84.65 0.44 1.22 16 7 N -0.92 -52.86 12.16 21.45 0.26 -52.60 16 8 Si 0.97 40.97 29.55 68.60 2.03 43.00 16 9 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 12 N -0.69 -27.03 5.07 -450.11 -2.28 -29.31 16 13 C 0.52 19.55 7.72 86.44 0.67 20.21 16 14 O -0.60 -28.81 15.90 -4.24 -0.07 -28.87 16 15 C -0.16 -3.93 9.44 23.64 0.22 -3.71 16 16 C -0.04 -0.97 9.50 23.86 0.23 -0.74 16 17 C -0.01 -0.19 5.90 -19.95 -0.12 -0.31 16 18 C -0.15 -1.99 9.49 22.67 0.22 -1.77 16 19 C 0.12 1.65 11.17 84.61 0.94 2.60 16 20 N -0.50 -9.93 10.31 -186.98 -1.93 -11.86 16 21 C 0.16 3.20 7.27 84.67 0.62 3.81 16 22 Cl -0.03 -0.62 29.10 -2.72 -0.08 -0.70 16 23 C -0.14 -2.64 9.67 22.70 0.22 -2.42 16 24 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 25 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 2.60 6.83 -2.39 -0.02 2.58 16 27 H 0.27 14.43 8.31 -92.71 -0.77 13.65 16 28 H 0.41 12.62 8.51 -92.71 -0.79 11.83 16 29 H 0.17 2.50 6.16 -2.91 -0.02 2.48 16 30 H 0.13 3.29 7.52 -2.91 -0.02 3.27 16 31 H 0.18 1.29 6.30 -2.91 -0.02 1.27 16 32 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 33 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -70.25 310.45 2.73 -67.52 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.36 Total: 13.88 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 4.43 Total: -1.07 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -3.95 Total: -93.76 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.07 Total: -28.87 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -70.25 2.73 -67.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129348293.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.649 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds