Wall clock time and date at job start Tue Mar 31 2020 00:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47112 * 2 1 4 4 C 1.50698 * 109.47375 * 120.00186 * 2 1 3 5 5 H 1.07997 * 120.00095 * 120.00238 * 4 2 1 6 6 C 1.37884 * 119.99863 * 300.00252 * 4 2 1 7 7 N 1.31510 * 119.99909 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00047 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47080 * 89.99593 * 8 6 4 10 10 H 1.48495 * 109.47404 * 209.99817 * 8 6 4 11 11 H 1.48506 * 109.47089 * 329.99902 * 8 6 4 12 12 N 1.46496 * 109.47468 * 240.00551 * 2 1 3 13 13 C 1.34776 * 120.00491 * 84.99902 * 12 2 1 14 14 O 1.21579 * 119.99630 * 359.97438 * 13 12 2 15 15 C 1.47616 * 120.00640 * 180.02562 * 13 12 2 16 16 C 1.39930 * 120.03767 * 270.00169 * 15 13 12 17 17 F 1.35103 * 120.01921 * 359.97438 * 16 15 13 18 18 C 1.38002 * 119.96283 * 179.97438 * 16 15 13 19 19 C 1.39613 * 120.03970 * 359.97438 * 18 16 15 20 20 C 1.43205 * 119.96496 * 179.97438 * 19 18 16 21 21 N 9.03641 * 108.66169 * 247.80323 * 2 1 3 22 22 C 1.39617 * 120.07208 * 0.25099 * 19 18 16 23 23 C 1.38001 * 120.03809 * 359.49125 * 22 19 18 24 24 F 1.35102 * 120.01693 * 180.26991 * 23 22 19 25 25 H 1.08992 * 109.47450 * 299.99598 * 1 2 3 26 26 H 1.09004 * 109.47356 * 59.99840 * 1 2 3 27 27 H 1.09004 * 109.47053 * 179.97438 * 1 2 3 28 28 H 0.96998 * 119.99901 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00107 * 264.99611 * 12 2 1 30 30 H 1.08004 * 119.98330 * 180.02562 * 18 16 15 31 31 H 1.08007 * 119.98024 * 179.72003 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8743 2.6992 10 1 0.9770 1.9952 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0183 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8575 1.1614 -2.4118 15 6 2.6387 -0.7139 -3.5626 16 6 4.0099 -0.7520 -3.8392 17 9 4.8850 -0.1514 -3.0033 18 6 4.4678 -1.4034 -4.9663 19 6 3.5640 -2.0247 -5.8302 20 6 4.0409 -2.6998 -6.9996 21 7 4.4214 -3.2344 -7.9269 22 6 2.1952 -1.9837 -5.5582 23 6 1.7342 -1.3377 -4.4292 24 9 0.4100 -1.3029 -4.1636 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9025 -0.5285 4.4375 29 1 2.2491 -1.6316 -1.1527 30 1 5.5261 -1.4334 -5.1799 31 1 1.4969 -2.4609 -6.2299 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130093448.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:51 Heat of formation + Delta-G solvation = -61.806187 kcal Electronic energy + Delta-G solvation = -20897.290922 eV Core-core repulsion = 17201.501369 eV Total energy + Delta-G solvation = -3695.789553 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.33742 -49.28454 -39.96218 -38.78942 -36.74260 -35.16788 -32.66369 -31.95672 -31.01958 -29.81332 -25.72819 -25.18677 -23.40051 -21.83282 -20.03114 -19.95522 -18.28502 -17.86357 -16.88375 -16.47006 -16.39305 -16.13610 -15.58661 -15.55304 -15.40563 -14.61214 -14.31391 -14.07646 -13.92772 -13.88998 -13.35221 -13.00838 -12.77712 -12.57627 -12.35815 -12.26226 -12.15384 -11.87973 -11.36432 -10.88534 -10.24719 -9.93276 -9.51986 -9.42517 -9.30961 -9.29913 -8.83007 -8.35898 -6.25520 -4.29090 -0.13197 0.44912 2.10141 2.17401 2.72009 2.96168 3.10226 3.20558 3.32992 3.36329 3.48179 3.54019 3.92592 4.27440 4.31144 4.34327 4.71844 4.78535 5.08964 5.25412 5.28732 5.40975 5.46044 6.07803 6.23900 6.29496 6.47387 6.76067 6.91567 7.02592 7.12940 7.40433 7.95639 8.36925 8.55257 8.74032 9.33903 10.86429 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.030415 B = 0.004428 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.378577 B = 6321.490960 C = 6663.186245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.236 3.764 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.082 0.918 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.884 3.116 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.261 1.261 12 N -0.681 5.681 13 C 0.548 3.452 14 O -0.529 6.529 15 C -0.160 4.160 16 C 0.168 3.832 17 F -0.108 7.108 18 C -0.119 4.119 19 C 0.041 3.959 20 C 0.256 3.744 21 N -0.395 5.395 22 C -0.120 4.120 23 C 0.166 3.834 24 F -0.111 7.111 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.268 0.732 29 H 0.399 0.601 30 H 0.159 0.841 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.389 -2.955 -16.786 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.133 3.867 3 H 0.070 0.930 4 C -0.575 4.575 5 H 0.100 0.900 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.186 1.186 12 N -0.328 5.328 13 C 0.330 3.670 14 O -0.407 6.407 15 C -0.166 4.166 16 C 0.148 3.852 17 F -0.086 7.086 18 C -0.140 4.140 19 C 0.037 3.963 20 C -0.060 4.060 21 N -0.069 5.069 22 C -0.141 4.141 23 C 0.146 3.854 24 F -0.089 7.089 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.233 0.767 30 H 0.177 0.823 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.750 -2.915 -17.953 18.272 hybrid contribution -0.722 0.593 0.876 1.281 sum 1.027 -2.322 -17.077 17.265 Atomic orbital electron populations 1.22458 0.98872 1.01162 0.99563 1.19234 0.90429 0.94779 0.82250 0.93006 1.20986 1.33587 1.14607 0.88358 0.90023 1.24812 0.95426 0.96688 0.95459 1.69857 1.44658 1.40026 0.98086 0.86893 0.80570 0.83576 0.77591 1.20190 1.22038 1.18598 1.46228 1.63420 1.13969 1.09200 1.17712 0.79525 0.86891 0.82870 1.90819 1.50504 1.14865 1.84484 1.20540 0.92953 1.03174 0.99901 1.16956 0.85031 0.94235 0.88992 1.91658 1.67199 1.80323 1.69425 1.21067 1.01599 0.98440 0.92927 1.15257 0.92137 0.98534 0.90356 1.25216 0.94085 0.93869 0.92833 1.81307 1.07066 1.08330 1.10223 1.21044 0.94915 1.01044 0.97095 1.16931 0.78052 0.96893 0.93569 1.91635 1.29719 1.94118 1.93416 0.93182 0.94379 0.92562 0.92177 0.76714 0.82298 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 8.96 37.15 0.33 -3.19 16 2 C 0.24 5.46 2.15 -69.09 -0.15 5.31 16 3 H 0.05 1.32 6.63 -51.92 -0.34 0.98 16 4 C -0.54 -14.12 9.31 -34.44 -0.32 -14.44 16 5 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -25.80 13.96 55.43 0.77 -25.02 16 8 Si 0.88 21.22 24.37 -169.99 -4.14 17.08 16 9 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.26 -6.22 6.53 56.52 0.37 -5.85 16 12 N -0.68 -13.09 5.07 -55.95 -0.28 -13.37 16 13 C 0.55 10.06 6.48 -12.43 -0.08 9.98 16 14 O -0.53 -11.69 16.77 5.30 0.09 -11.60 16 15 C -0.16 -2.13 5.64 -104.80 -0.59 -2.72 16 16 C 0.17 1.91 7.28 -39.03 -0.28 1.62 16 17 F -0.11 -1.46 16.82 2.25 0.04 -1.42 16 18 C -0.12 -0.93 9.71 -39.15 -0.38 -1.31 16 19 C 0.04 0.30 5.73 -106.94 -0.61 -0.31 16 20 C 0.26 2.12 15.31 -22.47 -0.34 1.78 16 21 N -0.39 -4.17 18.54 41.83 0.78 -3.39 16 22 C -0.12 -0.90 9.71 -39.15 -0.38 -1.28 16 23 C 0.17 1.81 7.28 -39.03 -0.28 1.53 16 24 F -0.11 -1.40 16.82 2.25 0.04 -1.36 16 25 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.40 6.69 8.52 -40.82 -0.35 6.34 16 30 H 0.16 0.86 8.06 -52.48 -0.42 0.43 16 31 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 292.97 15.07 4.41 4.41 Total: -1.00 -31.47 292.97 -3.64 -35.11 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -2.15 Total: 0.49 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -3.19 Total: -0.93 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 1.27 Total: -41.79 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.14 Total: 17.08 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.47 -3.64 -35.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130093448.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.693 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds