Wall clock time and date at job start Tue Mar 31 2020 00:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47112 * 2 1 4 4 C 1.50698 * 109.47375 * 120.00186 * 2 1 3 5 5 H 1.07997 * 120.00095 * 120.00238 * 4 2 1 6 6 C 1.37884 * 119.99863 * 300.00252 * 4 2 1 7 7 N 1.31510 * 119.99909 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00047 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47080 * 89.99593 * 8 6 4 10 10 H 1.48495 * 109.47404 * 209.99817 * 8 6 4 11 11 H 1.48506 * 109.47089 * 329.99902 * 8 6 4 12 12 N 1.46496 * 109.47468 * 240.00551 * 2 1 3 13 13 C 1.34776 * 120.00491 * 84.99902 * 12 2 1 14 14 O 1.21579 * 119.99630 * 359.97438 * 13 12 2 15 15 C 1.47616 * 120.00640 * 180.02562 * 13 12 2 16 16 C 1.39930 * 120.03767 * 270.00169 * 15 13 12 17 17 F 1.35103 * 120.01921 * 359.97438 * 16 15 13 18 18 C 1.38002 * 119.96283 * 179.97438 * 16 15 13 19 19 C 1.39613 * 120.03970 * 359.97438 * 18 16 15 20 20 C 1.43205 * 119.96496 * 179.97438 * 19 18 16 21 21 N 9.03641 * 108.66169 * 247.80323 * 2 1 3 22 22 C 1.39617 * 120.07208 * 0.25099 * 19 18 16 23 23 C 1.38001 * 120.03809 * 359.49125 * 22 19 18 24 24 F 1.35102 * 120.01693 * 180.26991 * 23 22 19 25 25 H 1.08992 * 109.47450 * 299.99598 * 1 2 3 26 26 H 1.09004 * 109.47356 * 59.99840 * 1 2 3 27 27 H 1.09004 * 109.47053 * 179.97438 * 1 2 3 28 28 H 0.96998 * 119.99901 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00107 * 264.99611 * 12 2 1 30 30 H 1.08004 * 119.98330 * 180.02562 * 18 16 15 31 31 H 1.08007 * 119.98024 * 179.72003 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8743 2.6992 10 1 0.9770 1.9952 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0183 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8575 1.1614 -2.4118 15 6 2.6387 -0.7139 -3.5626 16 6 4.0099 -0.7520 -3.8392 17 9 4.8850 -0.1514 -3.0033 18 6 4.4678 -1.4034 -4.9663 19 6 3.5640 -2.0247 -5.8302 20 6 4.0409 -2.6998 -6.9996 21 7 4.4214 -3.2344 -7.9269 22 6 2.1952 -1.9837 -5.5582 23 6 1.7342 -1.3377 -4.4292 24 9 0.4100 -1.3029 -4.1636 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9025 -0.5285 4.4375 29 1 2.2491 -1.6316 -1.1527 30 1 5.5261 -1.4334 -5.1799 31 1 1.4969 -2.4609 -6.2299 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130093448.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:50 Heat of formation + Delta-G solvation = -83.420282 kcal Electronic energy + Delta-G solvation = -20898.228180 eV Core-core repulsion = 17201.501369 eV Total energy + Delta-G solvation = -3696.726811 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.24862 -50.22665 -41.13852 -39.92913 -37.54616 -36.92884 -34.49440 -33.17598 -31.78109 -31.43145 -27.26943 -26.64347 -24.19765 -23.39015 -21.62317 -20.80394 -19.79350 -18.74694 -18.21373 -17.67972 -17.67177 -17.09175 -17.00459 -16.61938 -16.51770 -15.95066 -15.64606 -15.16244 -15.05277 -14.87446 -14.64957 -14.60040 -14.15001 -13.79999 -13.56736 -13.47450 -13.31797 -13.06984 -12.94040 -12.78569 -12.15760 -11.67191 -11.32257 -11.15154 -10.87894 -10.34453 -10.07504 -10.05230 -8.38213 -6.44949 -0.94296 -0.29501 1.27930 1.31852 1.37081 1.39722 1.41972 1.46013 2.07511 2.23191 2.26542 2.42509 2.71725 2.97738 3.14173 3.44700 3.55386 3.67653 4.00525 4.37783 4.44723 4.45984 4.54643 4.64941 4.66653 4.79540 4.95514 5.25836 5.29817 5.36238 5.50420 6.07230 6.24882 6.53337 6.64386 7.06118 7.24945 8.76817 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.030415 B = 0.004428 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.378577 B = 6321.490960 C = 6663.186245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.240 3.760 3 H 0.027 0.973 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.936 3.064 9 H -0.258 1.258 10 H -0.292 1.292 11 H -0.262 1.262 12 N -0.682 5.682 13 C 0.550 3.450 14 O -0.572 6.572 15 C -0.180 4.180 16 C 0.154 3.846 17 F -0.127 7.127 18 C -0.090 4.090 19 C 0.059 3.941 20 C 0.284 3.716 21 N -0.426 5.426 22 C -0.088 4.088 23 C 0.159 3.841 24 F -0.123 7.123 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.271 0.729 29 H 0.410 0.590 30 H 0.190 0.810 31 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.075 -3.564 -19.114 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.136 3.864 3 H 0.045 0.955 4 C -0.573 4.573 5 H 0.077 0.923 6 C -0.168 4.168 7 N -0.570 5.570 8 Si 0.763 3.237 9 H -0.183 1.183 10 H -0.219 1.219 11 H -0.186 1.186 12 N -0.330 5.330 13 C 0.334 3.666 14 O -0.453 6.453 15 C -0.185 4.185 16 C 0.134 3.866 17 F -0.105 7.105 18 C -0.111 4.111 19 C 0.055 3.945 20 C -0.032 4.032 21 N -0.101 5.101 22 C -0.109 4.109 23 C 0.138 3.862 24 F -0.101 7.101 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.246 0.754 30 H 0.207 0.793 31 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.439 -3.555 -20.308 20.667 hybrid contribution -0.539 0.707 1.505 1.748 sum 0.900 -2.848 -18.803 19.039 Atomic orbital electron populations 1.22349 0.97345 1.02030 0.99696 1.18891 0.91547 0.93307 0.82658 0.95530 1.21191 1.32648 1.13757 0.89720 0.92289 1.25526 0.96753 0.99282 0.95276 1.69963 1.46459 1.41847 0.98686 0.86043 0.79909 0.80374 0.77330 1.18322 1.21911 1.18628 1.46065 1.63715 1.14449 1.08784 1.18323 0.78085 0.86446 0.83718 1.90780 1.52144 1.16906 1.85428 1.20205 0.94410 1.05288 0.98634 1.17081 0.83949 0.95490 0.90069 1.91614 1.67622 1.80970 1.70298 1.21254 1.03160 0.95883 0.90770 1.15145 0.91954 0.97708 0.89693 1.24963 0.93106 0.92932 0.92164 1.81372 1.08097 1.09385 1.11266 1.21268 0.95456 0.98646 0.95526 1.16993 0.77192 0.97711 0.94269 1.91606 1.30551 1.94328 1.93641 0.93747 0.93440 0.91328 0.91957 0.75427 0.79302 0.79021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.66 8.96 71.98 0.65 -6.02 16 2 C 0.24 11.24 2.15 44.24 0.10 11.34 16 3 H 0.03 1.39 6.63 -2.38 -0.02 1.38 16 4 C -0.54 -28.66 9.31 25.60 0.24 -28.43 16 5 H 0.06 3.35 7.98 -2.91 -0.02 3.33 16 6 C 0.03 1.77 5.45 84.66 0.46 2.23 16 7 N -0.93 -54.95 13.96 21.45 0.30 -54.65 16 8 Si 0.94 43.85 24.37 68.60 1.67 45.52 16 9 H -0.26 -11.28 6.87 99.48 0.68 -10.60 16 10 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 11 H -0.26 -12.18 6.53 99.48 0.65 -11.53 16 12 N -0.68 -26.52 5.07 -449.21 -2.28 -28.80 16 13 C 0.55 20.33 6.48 86.72 0.56 20.90 16 14 O -0.57 -25.76 16.77 -3.97 -0.07 -25.83 16 15 C -0.18 -4.61 5.64 -19.98 -0.11 -4.73 16 16 C 0.15 3.25 7.28 22.62 0.16 3.41 16 17 F -0.13 -3.38 16.82 44.97 0.76 -2.63 16 18 C -0.09 -1.08 9.71 22.55 0.22 -0.86 16 19 C 0.06 0.62 5.73 -21.37 -0.12 0.50 16 20 C 0.28 3.56 15.31 88.33 1.35 4.91 16 21 N -0.43 -7.64 18.54 19.00 0.35 -7.29 16 22 C -0.09 -0.97 9.71 22.55 0.22 -0.76 16 23 C 0.16 3.11 7.28 22.62 0.16 3.28 16 24 F -0.12 -2.90 16.82 44.97 0.76 -2.15 16 25 H 0.04 1.93 3.27 -2.39 -0.01 1.92 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 28 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.41 13.91 8.52 -92.71 -0.79 13.12 16 30 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 31 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -70.05 292.97 5.73 -64.32 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 0.35 Total: 5.73 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 3.89 Total: 5.78 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -1.62 Total: -90.74 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.07 Total: -25.83 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 1.51 Total: -4.77 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.67 Total: 45.52 kcal Total: -70.05 5.73 -64.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130093448.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.098 kcal (2) G-P(sol) polarization free energy of solvation -70.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds