Wall clock time and date at job start Tue Mar 31 2020 01:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38168 * 120.03231 * 2 1 4 4 C 1.38237 * 120.05874 * 179.97438 * 3 2 1 5 5 N 1.48007 * 119.94498 * 179.97438 * 4 3 2 6 6 O 1.21795 * 119.99924 * 0.02562 * 5 4 3 7 7 O 1.21799 * 120.00177 * 180.02562 * 5 4 3 8 8 C 1.38291 * 120.11396 * 359.68307 * 4 3 2 9 9 C 1.38125 * 120.05217 * 0.60010 * 8 4 3 10 10 C 1.38720 * 120.03011 * 179.97438 * 2 1 3 11 11 O 1.35902 * 120.04843 * 359.97438 * 10 2 1 12 12 C 1.42902 * 116.99410 * 180.02562 * 11 10 2 13 13 C 1.50698 * 109.46776 * 180.02562 * 12 11 10 14 14 O 1.21292 * 120.00514 * 359.97438 * 13 12 11 15 15 N 1.34786 * 120.00122 * 180.02562 * 13 12 11 16 16 C 1.37092 * 120.00135 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00276 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99818 * 180.02562 * 16 15 13 19 19 N 1.31406 * 120.00205 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47292 * 59.99710 * 20 18 16 22 22 H 1.48496 * 109.47342 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47275 * 299.99972 * 20 18 16 24 24 H 1.09002 * 109.47308 * 270.02194 * 1 2 3 25 25 H 1.09006 * 109.46988 * 30.02104 * 1 2 3 26 26 H 1.09001 * 109.47057 * 150.01731 * 1 2 3 27 27 H 1.08006 * 119.96904 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.97772 * 180.29464 * 8 4 3 29 29 H 1.08002 * 120.03152 * 179.70250 * 9 8 4 30 30 H 1.08998 * 109.47006 * 299.99811 * 12 11 10 31 31 H 1.08995 * 109.47328 * 59.99911 * 12 11 10 32 32 H 0.97003 * 119.99577 * 359.97438 * 15 13 12 33 33 H 0.97000 * 120.00227 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1968 0.0005 5 7 4.3190 2.4796 0.0000 6 8 3.7085 3.5336 -0.0005 7 8 5.5370 2.4814 0.0000 8 6 4.2752 0.0009 0.0077 9 6 3.5887 -1.1976 0.0018 10 6 2.2012 -1.2010 0.0005 11 8 1.5233 -2.3789 0.0016 12 6 2.3033 -3.5762 0.0027 13 6 1.3870 -4.7726 0.0031 14 8 0.1843 -4.6155 0.0030 15 7 1.9039 -6.0174 0.0046 16 6 1.0704 -7.1058 0.0055 17 1 -0.0005 -6.9658 0.0055 18 6 1.6033 -8.3890 0.0077 19 7 2.9063 -8.5593 0.0083 20 14 0.4676 -9.8721 0.0096 21 1 -0.3889 -9.8413 -1.2031 22 1 1.2781 -11.1163 0.0111 23 1 -0.3895 -9.8376 1.2218 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8899 -0.5142 26 1 -0.3633 -0.8901 -0.5136 27 1 1.6584 2.1316 -0.0004 28 1 5.3552 0.0040 0.0129 29 1 4.1313 -2.1314 0.0025 30 1 2.9321 -3.6009 -0.8873 31 1 2.9322 -3.5993 0.8926 32 1 2.8658 -6.1431 0.0051 33 1 3.2784 -9.4551 0.0094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131404864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:45 Heat of formation + Delta-G solvation = -57.351888 kcal Electronic energy + Delta-G solvation = -20636.814453 eV Core-core repulsion = 17052.305568 eV Total energy + Delta-G solvation = -3584.508885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.24004 -40.69437 -38.62587 -37.37409 -36.62309 -34.18568 -33.43036 -31.54878 -31.32606 -28.67293 -27.44831 -26.12012 -24.83082 -22.75850 -21.94090 -19.78177 -18.99057 -18.72235 -18.50307 -18.07791 -17.58996 -16.56556 -16.29973 -15.81845 -14.95036 -14.74467 -14.31678 -14.20808 -13.82958 -13.61977 -13.29268 -13.17524 -12.48279 -12.45022 -12.17640 -11.73501 -11.66488 -11.38793 -11.37375 -11.23943 -11.21944 -11.12083 -10.59218 -10.41989 -9.73606 -9.54414 -8.78757 -8.71256 -8.23161 -6.63687 -4.06150 -0.20749 0.66796 1.27151 1.35269 2.70583 3.03000 3.05558 3.14993 3.19694 3.55285 4.01012 4.10470 4.19147 4.41726 4.56822 4.71874 4.89213 4.97233 4.99472 5.16252 5.31223 5.36795 5.44915 5.53984 5.55804 5.66261 5.88059 5.99043 6.11132 6.32467 6.95777 7.34954 7.58648 7.78379 8.32214 8.93065 9.22815 9.71947 10.53172 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.040600 B = 0.003062 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.490915 B = 9141.786219 C = 9810.829335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.116 4.116 3 C -0.020 4.020 4 C -0.091 4.091 5 N 0.040 4.960 6 O -0.173 6.173 7 O -0.173 6.173 8 C -0.015 4.015 9 C -0.211 4.211 10 C 0.192 3.808 11 O -0.264 6.264 12 C 0.043 3.957 13 C 0.436 3.564 14 O -0.573 6.573 15 N -0.549 5.549 16 C -0.306 4.306 17 H 0.106 0.894 18 C 0.028 3.972 19 N -0.896 5.896 20 Si 0.935 3.065 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.271 1.271 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.157 0.843 28 H 0.154 0.846 29 H 0.155 0.845 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.394 0.606 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 13.784 -0.005 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.117 4.117 3 C -0.039 4.039 4 C -0.175 4.175 5 N 0.556 4.444 6 O -0.386 6.386 7 O -0.386 6.386 8 C -0.035 4.035 9 C -0.231 4.231 10 C 0.143 3.857 11 O -0.173 6.173 12 C -0.036 4.036 13 C 0.220 3.780 14 O -0.457 6.457 15 N -0.186 5.186 16 C -0.434 4.434 17 H 0.124 0.876 18 C -0.175 4.175 19 N -0.536 5.536 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.197 1.197 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.175 0.825 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.228 0.772 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.554 13.034 -0.005 13.126 hybrid contribution 0.766 -0.625 0.013 0.989 sum 2.320 12.409 0.008 12.624 Atomic orbital electron populations 1.20703 0.88355 1.04001 1.03440 1.19244 0.97876 0.88750 1.05845 1.20689 0.90785 0.99361 0.93086 1.20884 0.92435 0.83465 1.20724 1.43521 1.01112 1.02800 0.97008 1.94516 1.69933 1.20088 1.54099 1.94521 0.95705 1.94292 1.54117 1.20772 1.01738 0.89190 0.91755 1.21362 0.93024 0.99285 1.09389 1.19403 0.90484 0.87002 0.88843 1.86275 1.34588 1.11350 1.85115 1.22764 0.94615 0.83306 1.02871 1.19144 0.88729 0.83438 0.86660 1.90585 1.14731 1.85144 1.55282 1.41683 1.09818 1.03575 1.63479 1.19684 0.92068 0.83106 1.48588 0.87587 1.25318 0.96442 0.99209 0.96578 1.69586 1.10568 1.24287 1.49164 0.85846 0.79352 0.79370 0.79306 1.19663 1.20768 1.19660 0.90430 0.91050 0.89593 0.82527 0.82790 0.82750 0.89678 0.89661 0.77197 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.79 36.00 0.35 -0.77 16 2 C -0.12 -1.32 5.89 -104.47 -0.62 -1.93 16 3 C -0.02 -0.21 9.20 -39.61 -0.36 -0.58 16 4 C -0.09 -1.07 6.85 -79.93 -0.55 -1.62 16 5 N 0.04 0.53 4.45 33.97 0.15 0.68 16 6 O -0.17 -2.40 18.44 -29.46 -0.54 -2.95 16 7 O -0.17 -2.41 18.44 -29.46 -0.54 -2.96 16 8 C -0.02 -0.16 9.55 -39.60 -0.38 -0.54 16 9 C -0.21 -2.22 9.04 -39.43 -0.36 -2.58 16 10 C 0.19 2.42 6.66 -39.21 -0.26 2.16 16 11 O -0.26 -4.14 8.72 -39.34 -0.34 -4.49 16 12 C 0.04 0.66 5.22 36.00 0.19 0.84 16 13 C 0.44 9.50 7.86 -10.98 -0.09 9.41 16 14 O -0.57 -14.92 16.07 -14.36 -0.23 -15.15 16 15 N -0.55 -12.74 5.29 -10.96 -0.06 -12.80 16 16 C -0.31 -7.97 9.68 -14.94 -0.14 -8.11 16 17 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 18 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 19 N -0.90 -22.75 13.05 55.50 0.72 -22.03 16 20 Si 0.94 19.80 29.55 -169.99 -5.02 14.77 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.09 1.05 7.53 -51.93 -0.39 0.66 16 27 H 0.16 1.39 7.60 -52.48 -0.40 0.99 16 28 H 0.15 1.33 7.61 -52.48 -0.40 0.93 16 29 H 0.15 1.31 6.30 -52.49 -0.33 0.98 16 30 H 0.09 1.07 7.66 -51.93 -0.40 0.67 16 31 H 0.09 1.07 7.66 -51.93 -0.40 0.68 16 32 H 0.39 8.52 7.90 -40.82 -0.32 8.19 16 33 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 304.55 15.07 4.59 4.59 Total: -1.00 -30.52 304.55 -6.58 -37.09 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -2.99 Total: 6.34 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.31 Total: -3.12 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.82 Total: -34.14 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -1.66 Total: -25.54 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.52 -6.58 -37.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131404864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.259 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds