Wall clock time and date at job start Tue Mar 31 2020 01:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38168 * 120.03231 * 2 1 4 4 C 1.38237 * 120.05874 * 179.97438 * 3 2 1 5 5 N 1.48007 * 119.94498 * 179.97438 * 4 3 2 6 6 O 1.21795 * 119.99924 * 0.02562 * 5 4 3 7 7 O 1.21799 * 120.00177 * 180.02562 * 5 4 3 8 8 C 1.38291 * 120.11396 * 359.68307 * 4 3 2 9 9 C 1.38125 * 120.05217 * 0.60010 * 8 4 3 10 10 C 1.38720 * 120.03011 * 179.97438 * 2 1 3 11 11 O 1.35902 * 120.04843 * 359.97438 * 10 2 1 12 12 C 1.42902 * 116.99410 * 180.02562 * 11 10 2 13 13 C 1.50698 * 109.46776 * 180.02562 * 12 11 10 14 14 O 1.21292 * 120.00514 * 359.97438 * 13 12 11 15 15 N 1.34786 * 120.00122 * 180.02562 * 13 12 11 16 16 C 1.37092 * 120.00135 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00276 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99818 * 180.02562 * 16 15 13 19 19 N 1.31406 * 120.00205 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47292 * 59.99710 * 20 18 16 22 22 H 1.48496 * 109.47342 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47275 * 299.99972 * 20 18 16 24 24 H 1.09002 * 109.47308 * 270.02194 * 1 2 3 25 25 H 1.09006 * 109.46988 * 30.02104 * 1 2 3 26 26 H 1.09001 * 109.47057 * 150.01731 * 1 2 3 27 27 H 1.08006 * 119.96904 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.97772 * 180.29464 * 8 4 3 29 29 H 1.08002 * 120.03152 * 179.70250 * 9 8 4 30 30 H 1.08998 * 109.47006 * 299.99811 * 12 11 10 31 31 H 1.08995 * 109.47328 * 59.99911 * 12 11 10 32 32 H 0.97003 * 119.99577 * 359.97438 * 15 13 12 33 33 H 0.97000 * 120.00227 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1968 0.0005 5 7 4.3190 2.4796 0.0000 6 8 3.7085 3.5336 -0.0005 7 8 5.5370 2.4814 0.0000 8 6 4.2752 0.0009 0.0077 9 6 3.5887 -1.1976 0.0018 10 6 2.2012 -1.2010 0.0005 11 8 1.5233 -2.3789 0.0016 12 6 2.3033 -3.5762 0.0027 13 6 1.3870 -4.7726 0.0031 14 8 0.1843 -4.6155 0.0030 15 7 1.9039 -6.0174 0.0046 16 6 1.0704 -7.1058 0.0055 17 1 -0.0005 -6.9658 0.0055 18 6 1.6033 -8.3890 0.0077 19 7 2.9063 -8.5593 0.0083 20 14 0.4676 -9.8721 0.0096 21 1 -0.3889 -9.8413 -1.2031 22 1 1.2781 -11.1163 0.0111 23 1 -0.3895 -9.8376 1.2218 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8899 -0.5142 26 1 -0.3633 -0.8901 -0.5136 27 1 1.6584 2.1316 -0.0004 28 1 5.3552 0.0040 0.0129 29 1 4.1313 -2.1314 0.0025 30 1 2.9321 -3.6009 -0.8873 31 1 2.9322 -3.5993 0.8926 32 1 2.8658 -6.1431 0.0051 33 1 3.2784 -9.4551 0.0094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131404864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:44 Heat of formation + Delta-G solvation = -75.444954 kcal Electronic energy + Delta-G solvation = -20637.599027 eV Core-core repulsion = 17052.305568 eV Total energy + Delta-G solvation = -3585.293459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.23490 -41.71747 -40.15404 -38.61182 -37.65278 -36.06721 -34.29810 -33.41639 -32.27239 -30.02150 -28.30238 -27.23409 -26.48884 -23.75794 -22.88889 -21.38699 -20.14909 -19.91007 -19.73454 -19.36736 -18.58954 -17.90989 -17.45467 -17.18250 -16.52508 -15.88880 -15.74251 -15.47813 -15.05241 -14.53896 -14.45639 -14.42709 -13.79627 -13.56018 -13.34763 -13.06179 -12.97745 -12.71137 -12.49956 -12.38761 -12.28115 -12.27990 -12.25695 -12.14083 -11.58885 -10.51451 -10.36840 -10.12338 -9.73945 -8.54015 -6.03744 -1.19343 -0.15298 0.29484 0.39697 1.36454 1.41053 1.49497 1.63206 1.87605 2.16342 2.30347 3.09496 3.12392 3.29271 3.41978 3.53138 3.77537 3.92358 4.08400 4.14472 4.23237 4.26360 4.53897 4.60908 4.71951 4.74195 4.85236 5.13584 5.22671 5.35323 5.36543 5.83457 5.99891 6.48388 6.52754 7.03023 7.40191 7.94783 8.62350 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.040600 B = 0.003062 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.490915 B = 9141.786219 C = 9810.829335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.120 4.120 3 C -0.014 4.014 4 C -0.099 4.099 5 N 0.040 4.960 6 O -0.186 6.186 7 O -0.184 6.184 8 C -0.011 4.011 9 C -0.201 4.201 10 C 0.175 3.825 11 O -0.292 6.292 12 C 0.054 3.946 13 C 0.433 3.567 14 O -0.623 6.623 15 N -0.556 5.556 16 C -0.339 4.339 17 H 0.081 0.919 18 C -0.005 4.005 19 N -0.912 5.912 20 Si 0.992 3.008 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.271 1.271 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.174 0.826 28 H 0.174 0.826 29 H 0.180 0.820 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.402 0.598 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 14.031 0.016 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.122 4.122 3 C -0.033 4.033 4 C -0.184 4.184 5 N 0.553 4.447 6 O -0.398 6.398 7 O -0.396 6.396 8 C -0.030 4.030 9 C -0.220 4.220 10 C 0.127 3.873 11 O -0.202 6.202 12 C -0.023 4.023 13 C 0.220 3.780 14 O -0.510 6.510 15 N -0.194 5.194 16 C -0.468 4.468 17 H 0.099 0.901 18 C -0.206 4.206 19 N -0.552 5.552 20 Si 0.815 3.185 21 H -0.197 1.197 22 H -0.194 1.194 23 H -0.197 1.197 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.080 0.920 27 H 0.191 0.809 28 H 0.192 0.808 29 H 0.197 0.803 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.237 0.763 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.661 13.309 0.015 13.572 hybrid contribution 0.424 -0.612 0.007 0.745 sum 3.085 12.697 0.022 13.066 Atomic orbital electron populations 1.20705 0.87980 1.03992 1.03705 1.19375 0.98322 0.88701 1.05764 1.20817 0.90534 0.99724 0.92190 1.21091 0.92843 0.83042 1.21376 1.43744 1.01085 1.03244 0.96627 1.94510 1.69865 1.20811 1.54630 1.94511 0.96141 1.94471 1.54503 1.21013 1.02744 0.88498 0.90709 1.21572 0.92067 1.00309 1.08062 1.19614 0.91480 0.86095 0.90110 1.86224 1.35723 1.12145 1.86139 1.22601 0.92845 0.80766 1.06107 1.20237 0.89032 0.84702 0.84031 1.90553 1.17446 1.86189 1.56781 1.41701 1.09876 1.03792 1.64029 1.19626 0.91587 0.84848 1.50759 0.90091 1.26011 0.97841 1.01009 0.95712 1.69630 1.11412 1.25094 1.49092 0.85004 0.77775 0.76677 0.79043 1.19671 1.19404 1.19662 0.90056 0.88655 0.91963 0.80904 0.80849 0.80316 0.86288 0.86260 0.76313 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.79 71.23 0.70 -1.42 16 2 C -0.12 -2.54 5.89 -19.77 -0.12 -2.66 16 3 C -0.01 -0.26 9.20 22.25 0.20 -0.06 16 4 C -0.10 -2.11 6.85 36.39 0.25 -1.86 16 5 N 0.04 1.01 4.45 -46.44 -0.21 0.80 16 6 O -0.19 -4.95 18.44 18.89 0.35 -4.60 16 7 O -0.18 -4.85 18.44 18.89 0.35 -4.50 16 8 C -0.01 -0.19 9.55 22.26 0.21 0.02 16 9 C -0.20 -3.58 9.04 22.37 0.20 -3.38 16 10 C 0.18 4.07 6.66 22.51 0.15 4.21 16 11 O -0.29 -8.78 8.72 -73.41 -0.64 -9.42 16 12 C 0.05 1.55 5.22 71.24 0.37 1.92 16 13 C 0.43 18.85 7.86 87.65 0.69 19.54 16 14 O -0.62 -33.23 16.07 15.97 0.26 -32.97 16 15 N -0.56 -25.91 5.29 -306.98 -1.62 -27.53 16 16 C -0.34 -18.01 9.68 84.04 0.81 -17.19 16 17 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 18 C 0.00 -0.22 5.50 84.93 0.47 0.24 16 19 N -0.91 -45.70 13.05 21.66 0.28 -45.42 16 20 Si 0.99 40.30 29.55 68.60 2.03 42.33 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 24 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.09 1.37 8.09 -2.38 -0.02 1.35 16 26 H 0.06 1.54 7.53 -2.39 -0.02 1.52 16 27 H 0.17 2.69 7.60 -2.91 -0.02 2.67 16 28 H 0.17 2.40 7.61 -2.91 -0.02 2.38 16 29 H 0.18 2.25 6.30 -2.91 -0.02 2.23 16 30 H 0.12 2.59 7.66 -2.39 -0.02 2.58 16 31 H 0.12 2.60 7.66 -2.39 -0.02 2.58 16 32 H 0.40 17.13 7.90 -92.71 -0.73 16.40 16 33 H 0.28 13.22 8.31 -92.71 -0.77 12.45 16 Total: -1.00 -67.01 304.55 5.18 -61.83 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.44 Total: 20.12 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 3.94 Total: -0.63 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -1.55 Total: -72.15 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: 0.31 Total: -51.50 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -67.01 5.18 -61.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131404864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.616 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds