Wall clock time and date at job start Tue Mar 31 2020 01:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00271 * 2 1 4 4 C 1.50697 * 109.47338 * 270.00352 * 3 2 1 5 5 H 1.08004 * 120.00186 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00151 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00243 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 119.99865 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47240 * 90.00644 * 8 6 4 10 10 H 1.48499 * 109.47510 * 210.00224 * 8 6 4 11 11 H 1.48497 * 109.47631 * 330.00401 * 8 6 4 12 12 C 1.34777 * 119.99875 * 180.02562 * 2 1 3 13 13 O 1.21673 * 120.00005 * 179.97438 * 12 2 1 14 14 C 1.46655 * 120.00110 * 0.26851 * 12 2 1 15 15 C 1.34636 * 119.99915 * 179.72520 * 14 12 2 16 16 C 1.47416 * 119.99548 * 180.02562 * 15 14 12 17 17 C 1.40180 * 120.94274 * 359.72094 * 16 15 14 18 18 C 1.37946 * 118.99940 * 179.77634 * 17 16 15 19 19 N 1.31915 * 120.94004 * 0.51521 * 18 17 16 20 20 C 1.31954 * 122.10251 * 359.73341 * 19 18 17 21 21 Cl 1.73591 * 119.55944 * 180.02562 * 20 19 18 22 22 C 1.38204 * 120.88471 * 0.02562 * 20 19 18 23 23 H 1.09001 * 109.47017 * 269.99772 * 1 2 3 24 24 H 1.08997 * 109.47346 * 29.99460 * 1 2 3 25 25 H 1.09001 * 109.47115 * 149.99565 * 1 2 3 26 26 H 1.08999 * 109.46626 * 30.00758 * 3 2 1 27 27 H 1.08996 * 109.47068 * 150.00171 * 3 2 1 28 28 H 0.96994 * 119.99676 * 179.97438 * 7 6 4 29 29 H 1.08002 * 120.00114 * 359.73136 * 14 12 2 30 30 H 1.07991 * 120.00494 * 0.02562 * 15 14 12 31 31 H 1.08000 * 120.50162 * 0.02562 * 17 16 15 32 32 H 1.07995 * 119.52737 * 180.22168 * 18 17 16 33 33 H 1.08000 * 120.52075 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.3457 3.2575 -2.9126 8 14 3.7340 3.9286 -0.2529 9 1 5.1071 3.5067 0.1236 10 1 3.7500 5.3552 -0.6645 11 1 2.8276 3.7595 0.9112 12 6 2.1388 -1.1672 -0.0005 13 8 3.3555 -1.1672 -0.0010 14 6 1.4055 -2.4373 -0.0070 15 6 2.0788 -3.6032 -0.0132 16 6 1.3416 -4.8798 -0.0203 17 6 -0.0600 -4.9028 -0.0150 18 6 -0.7089 -6.1201 -0.0267 19 7 -0.0295 -7.2508 -0.0325 20 6 1.2898 -7.2762 -0.0327 21 17 2.1169 -8.8024 -0.0412 22 6 2.0219 -6.1041 -0.0262 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6085 2.0283 0.5140 27 1 3.1499 1.1383 0.5138 28 1 3.8225 4.0833 -3.0898 29 1 0.3255 -2.4373 -0.0070 30 1 3.1587 -3.6033 -0.0128 31 1 -0.6233 -3.9814 -0.0059 32 1 -1.7885 -6.1477 -0.0263 33 1 3.1016 -6.1317 -0.0268 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151279262.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:56 Heat of formation + Delta-G solvation = 18.286525 kcal Electronic energy + Delta-G solvation = -18211.416098 eV Core-core repulsion = 15070.896306 eV Total energy + Delta-G solvation = -3140.519792 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53671 -39.17703 -36.97093 -35.28736 -34.77829 -32.61460 -31.57866 -30.83304 -28.59997 -26.20469 -24.99891 -23.93574 -22.70688 -20.67996 -18.48850 -17.75927 -17.00245 -16.84926 -16.33968 -16.05272 -15.35442 -14.84434 -14.68623 -14.43147 -13.97924 -13.60822 -13.26270 -12.66886 -12.60855 -12.40077 -12.14804 -12.12707 -11.74581 -11.61401 -11.41341 -11.17347 -10.97278 -10.57197 -10.20877 -10.01999 -9.61401 -9.36528 -9.27166 -8.96158 -8.63695 -7.80358 -6.13403 -4.13014 0.19110 0.59511 1.48897 1.87417 3.25764 3.31666 3.33548 3.33696 3.62125 3.82188 4.10782 4.27552 4.35300 4.53283 4.58581 4.67112 4.98997 5.15911 5.20903 5.22887 5.45076 5.54556 5.56081 5.74815 6.06190 6.08699 6.13516 6.28256 6.63644 6.87045 7.21272 7.35482 7.54486 8.10476 8.40380 8.79454 8.90085 9.46117 10.99896 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.037207 B = 0.003016 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.364785 B = 9280.482145 C = 9628.474796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.589 5.589 3 C 0.214 3.786 4 C -0.531 4.531 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.532 3.468 13 O -0.537 6.537 14 C -0.156 4.156 15 C -0.066 4.066 16 C 0.005 3.995 17 C -0.163 4.163 18 C 0.122 3.878 19 N -0.484 5.484 20 C 0.176 3.824 21 Cl -0.032 7.032 22 C -0.141 4.141 23 H 0.048 0.952 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.032 0.968 27 H 0.038 0.962 28 H 0.265 0.735 29 H 0.131 0.869 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.168 0.832 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.917 -17.985 7.855 21.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.320 5.320 3 C 0.094 3.906 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.320 3.680 13 O -0.416 6.416 14 C -0.178 4.178 15 C -0.085 4.085 16 C -0.004 4.004 17 C -0.183 4.183 18 C -0.034 4.034 19 N -0.195 5.195 20 C 0.013 3.987 21 Cl -0.004 7.004 22 C -0.162 4.162 23 H 0.066 0.934 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.148 0.852 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.185 0.815 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.582 -18.718 7.740 21.998 hybrid contribution 0.704 1.301 0.477 1.554 sum -7.878 -17.417 8.217 20.807 Atomic orbital electron populations 1.21746 0.80768 1.03176 1.00666 1.47765 1.06426 1.07128 1.70656 1.19716 0.92538 0.79808 0.98540 1.21306 1.37253 1.07281 0.91144 0.90727 1.24861 0.95168 0.97334 0.95632 1.69895 1.41307 1.23567 1.18684 0.86838 0.80161 0.79774 0.82839 1.19845 1.21009 1.19044 1.18152 0.87473 0.84002 0.78408 1.90792 1.13446 1.87331 1.50064 1.23444 1.00612 0.93186 1.00555 1.22180 1.00747 0.89285 0.96323 1.19410 0.93139 0.93113 0.94695 1.22543 0.94262 1.00414 1.01073 1.22601 1.00338 0.86118 0.94385 1.66901 1.07549 1.31913 1.13161 1.21503 0.89957 0.87513 0.99747 1.98412 1.75494 1.29992 1.96466 1.22067 1.02028 0.90288 1.01789 0.93364 0.90280 0.92017 0.94996 0.94376 0.92478 0.85171 0.83798 0.83458 0.81450 0.83133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.16 59.84 0.61 1.73 16 2 N -0.59 -11.65 2.86 -184.53 -0.53 -12.18 16 3 C 0.21 5.12 4.23 -5.19 -0.02 5.10 16 4 C -0.53 -15.03 9.94 -34.44 -0.34 -15.38 16 5 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 8 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 12 C 0.53 10.39 7.61 -12.86 -0.10 10.29 16 13 O -0.54 -12.80 15.81 5.21 0.08 -12.72 16 14 C -0.16 -2.13 8.63 -37.46 -0.32 -2.46 16 15 C -0.07 -0.82 9.50 -37.12 -0.35 -1.17 16 16 C 0.00 0.05 5.90 -104.75 -0.62 -0.57 16 17 C -0.16 -1.42 9.49 -38.96 -0.37 -1.78 16 18 C 0.12 1.05 11.17 -17.62 -0.20 0.85 16 19 N -0.48 -5.35 10.31 -10.46 -0.11 -5.46 16 20 C 0.18 1.92 7.27 -17.51 -0.13 1.79 16 21 Cl -0.03 -0.32 29.10 -51.86 -1.51 -1.83 16 22 C -0.14 -1.44 9.67 -38.91 -0.38 -1.81 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 25 H 0.06 0.68 6.08 -51.93 -0.32 0.37 16 26 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 27 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.13 1.31 4.32 -52.49 -0.23 1.08 16 30 H 0.14 1.91 7.52 -52.49 -0.39 1.52 16 31 H 0.15 0.93 6.30 -52.49 -0.33 0.60 16 32 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 306.18 15.07 4.61 4.61 Total: -1.00 -34.49 306.18 -6.93 -41.42 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.27 Total: -2.38 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.32 Total: -1.41 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.14 Total: -44.22 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.51 Total: -1.83 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.49 -6.93 -41.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151279262.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.703 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds