Wall clock time and date at job start Tue Mar 31 2020 02:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 119.99813 * 2 1 4 4 C 1.50706 * 109.46731 * 269.99086 * 3 2 1 5 5 H 1.07995 * 120.00024 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99816 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99760 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99715 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47296 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 119.99939 * 8 6 4 11 11 H 1.48502 * 109.46958 * 239.99732 * 8 6 4 12 12 C 1.34777 * 119.99995 * 179.97438 * 2 1 3 13 13 O 1.21590 * 119.99790 * 184.15772 * 12 2 1 14 14 C 1.47532 * 120.00184 * 4.43662 * 12 2 1 15 15 C 1.39709 * 120.18720 * 310.72542 * 14 12 2 16 16 C 1.37792 * 119.90556 * 179.74738 * 15 14 12 17 17 C 1.38542 * 120.29912 * 0.52660 * 16 15 14 18 18 C 1.38061 * 120.39264 * 359.74903 * 17 16 15 19 19 N 1.48018 * 119.96003 * 179.97438 * 18 17 16 20 20 O 1.21803 * 120.00086 * 359.97438 * 19 18 17 21 21 O 1.21796 * 120.00074 * 179.97438 * 19 18 17 22 22 C 1.38707 * 120.08284 * 359.97438 * 18 17 16 23 23 O 1.35649 * 120.15016 * 180.02562 * 22 18 17 24 24 H 1.09000 * 109.47813 * 273.03629 * 1 2 3 25 25 H 1.09008 * 109.47202 * 33.03587 * 1 2 3 26 26 H 1.08999 * 109.47442 * 153.03212 * 1 2 3 27 27 H 1.08998 * 109.47259 * 29.99454 * 3 2 1 28 28 H 1.09004 * 109.47011 * 149.99692 * 3 2 1 29 29 H 0.97004 * 119.99517 * 179.97438 * 7 6 4 30 30 H 1.07995 * 120.04786 * 0.02562 * 15 14 12 31 31 H 1.07998 * 119.84818 * 180.27604 * 16 15 14 32 32 H 1.08006 * 119.80612 * 179.76561 * 17 16 15 33 33 H 0.96705 * 114.00006 * 270.01389 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0976 1.0960 -2.2417 6 6 3.1270 2.8774 -1.6729 7 7 3.5550 3.6170 -0.6733 8 14 3.4378 3.4167 -3.4341 9 1 2.8600 2.4166 -4.3674 10 1 2.8008 4.7377 -3.6670 11 1 4.9004 3.5243 -3.6680 12 6 2.1388 -1.1672 0.0005 13 8 3.3523 -1.1685 0.0769 14 6 1.4045 -2.4430 -0.0977 15 6 0.3122 -2.6910 0.7373 16 6 -0.3727 -3.8825 0.6370 17 6 0.0235 -4.8413 -0.2812 18 6 1.1047 -4.6115 -1.1085 19 7 1.5200 -5.6428 -2.0857 20 8 0.9084 -6.6935 -2.1593 21 8 2.4734 -5.4407 -2.8163 22 6 1.8021 -3.4154 -1.0252 23 8 2.8643 -3.1880 -1.8377 24 1 -0.3635 0.0544 1.0262 25 1 -0.3634 0.8616 -0.5603 26 1 -0.3634 -0.9159 -0.4660 27 1 1.6083 2.0284 0.5137 28 1 3.1498 1.1385 0.5139 29 1 4.0325 4.4426 -0.8506 30 1 0.0023 -1.9481 1.4573 31 1 -1.2196 -4.0714 1.2799 32 1 -0.5167 -5.7739 -0.3505 33 1 3.7102 -3.4781 -1.4698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159679457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:37 Heat of formation + Delta-G solvation = -67.028536 kcal Electronic energy + Delta-G solvation = -21773.771565 eV Core-core repulsion = 18188.843070 eV Total energy + Delta-G solvation = -3584.928496 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.34936 -41.69926 -39.81427 -38.36882 -37.50422 -36.69224 -34.87050 -33.27821 -31.65140 -29.78601 -27.76368 -27.42741 -25.90317 -23.99909 -23.63543 -21.37646 -20.01034 -19.73119 -19.44120 -18.76613 -18.64237 -17.75721 -17.58337 -17.07177 -16.91650 -16.31907 -15.91432 -15.66484 -14.76123 -14.42202 -14.09504 -13.78485 -13.67120 -13.50613 -13.41505 -13.09339 -12.87843 -12.75336 -12.64310 -12.59887 -12.29812 -12.28592 -11.94369 -11.75373 -11.01690 -10.71077 -10.65528 -10.21517 -9.55964 -8.28336 -6.42289 -1.32406 -0.50895 0.15370 0.27503 1.32572 1.35664 1.46251 1.56612 1.97107 2.30071 2.35747 2.63178 3.02007 3.18281 3.47560 3.62258 3.77467 3.94321 4.19468 4.28555 4.54539 4.60523 4.77836 4.85919 4.87946 4.95168 5.10129 5.17227 5.33218 5.46277 5.73381 5.99198 6.27213 6.46475 6.53793 6.66512 7.13717 7.31011 8.78946 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.022622 B = 0.004948 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.413012 B = 5657.951804 C = 6407.217414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.597 5.597 3 C 0.259 3.741 4 C -0.546 4.546 5 H 0.046 0.954 6 C 0.014 3.986 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.265 1.265 11 H -0.280 1.280 12 C 0.548 3.452 13 O -0.583 6.583 14 C -0.167 4.167 15 C -0.010 4.010 16 C -0.101 4.101 17 C -0.013 4.013 18 C -0.098 4.098 19 N 0.035 4.965 20 O -0.147 6.147 21 O -0.201 6.201 22 C 0.203 3.797 23 O -0.489 6.489 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.036 0.964 28 H 0.005 0.995 29 H 0.269 0.731 30 H 0.181 0.819 31 H 0.214 0.786 32 H 0.191 0.809 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.987 -15.751 6.006 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.326 5.326 3 C 0.139 3.861 4 C -0.585 4.585 5 H 0.064 0.936 6 C -0.185 4.185 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.190 1.190 11 H -0.206 1.206 12 C 0.336 3.664 13 O -0.464 6.464 14 C -0.171 4.171 15 C -0.029 4.029 16 C -0.119 4.119 17 C -0.032 4.032 18 C -0.183 4.183 19 N 0.550 4.450 20 O -0.368 6.368 21 O -0.407 6.407 22 C 0.155 3.845 23 O -0.303 6.303 24 H 0.111 0.889 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.054 0.946 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.199 0.801 31 H 0.230 0.770 32 H 0.208 0.792 33 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -13.807 -14.774 6.141 21.133 hybrid contribution 1.505 0.297 -1.168 1.928 sum -12.302 -14.476 4.973 19.638 Atomic orbital electron populations 1.22230 0.77601 1.03909 1.03631 1.48062 1.08671 1.05954 1.69949 1.18854 0.91509 0.79760 0.96022 1.21676 1.37168 1.06621 0.93007 0.93581 1.25744 0.94782 0.96352 1.01660 1.70025 1.38673 1.14850 1.32715 0.85448 0.78026 0.78422 0.79409 1.19875 1.18979 1.20611 1.18348 0.86797 0.84211 0.77037 1.90738 1.15750 1.87776 1.52100 1.20346 1.01433 0.94909 1.00424 1.22260 0.88231 0.98527 0.93869 1.21738 1.01692 0.90303 0.98177 1.21712 0.90051 1.02231 0.89211 1.21713 1.06085 0.89587 1.00897 1.43632 0.99507 1.01321 1.00498 1.94455 1.54022 1.14037 1.74330 1.94633 1.19762 1.85565 1.40708 1.18293 0.89435 0.89051 0.87748 1.84692 1.17812 1.84892 1.42926 0.88861 0.91366 0.89594 0.94647 0.97720 0.92223 0.80136 0.76959 0.79192 0.72058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.79 9.09 127.77 1.16 2.95 16 2 N -0.60 -24.10 2.86 -854.91 -2.44 -26.54 16 3 C 0.26 13.55 5.21 85.63 0.45 14.00 16 4 C -0.55 -31.46 9.39 25.60 0.24 -31.22 16 5 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 6 C 0.01 0.82 5.46 84.66 0.46 1.28 16 7 N -0.92 -54.92 13.29 21.45 0.28 -54.64 16 8 Si 0.96 45.36 29.54 68.60 2.03 47.39 16 9 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 12 C 0.55 22.29 6.95 86.69 0.60 22.90 16 13 O -0.58 -29.55 16.08 5.14 0.08 -29.47 16 14 C -0.17 -4.72 4.90 -20.01 -0.10 -4.82 16 15 C -0.01 -0.16 7.61 22.52 0.17 0.01 16 16 C -0.10 -0.81 10.02 22.24 0.22 -0.58 16 17 C -0.01 -0.18 9.54 22.30 0.21 0.04 16 18 C -0.10 -2.39 6.86 36.45 0.25 -2.14 16 19 N 0.04 1.03 4.45 -46.29 -0.21 0.82 16 20 O -0.15 -3.95 18.44 18.88 0.35 -3.60 16 21 O -0.20 -6.92 17.24 25.61 0.44 -6.48 16 22 C 0.20 6.11 6.67 22.84 0.15 6.26 16 23 O -0.49 -17.59 10.55 -63.51 -0.67 -18.26 16 24 H 0.09 1.67 7.56 -2.39 -0.02 1.65 16 25 H 0.07 1.96 8.10 -2.38 -0.02 1.94 16 26 H 0.09 1.79 5.68 -2.39 -0.01 1.78 16 27 H 0.04 1.83 8.07 -2.39 -0.02 1.81 16 28 H 0.00 0.28 7.37 -2.39 -0.02 0.26 16 29 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.18 1.77 6.59 -2.91 -0.02 1.75 16 31 H 0.21 -0.56 8.06 -2.91 -0.02 -0.58 16 32 H 0.19 1.39 7.59 -2.91 -0.02 1.37 16 33 H 0.42 12.74 9.06 -74.05 -0.67 12.07 16 Total: -1.00 -82.91 299.68 4.19 -78.71 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: 0.50 Total: 3.38 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 3.82 Total: 8.68 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -2.36 Total: -80.35 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: 0.20 Total: -57.81 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -82.91 4.19 -78.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159679457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.686 kcal (2) G-P(sol) polarization free energy of solvation -82.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds