Wall clock time and date at job start Tue Mar 31 2020 01:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46500 * 109.46746 * 239.99818 * 2 1 3 13 13 C 1.34774 * 120.00106 * 85.00589 * 12 2 1 14 14 O 1.21584 * 120.00089 * 359.97438 * 13 12 2 15 15 C 1.47604 * 119.99815 * 179.97438 * 13 12 2 16 16 C 1.39748 * 120.09042 * 359.72620 * 15 13 12 17 17 C 1.37683 * 119.91027 * 179.76199 * 16 15 13 18 18 C 1.39013 * 120.08820 * 0.48937 * 17 16 15 19 19 O 1.35714 * 119.90941 * 179.76211 * 18 17 16 20 20 C 1.38977 * 120.17680 * 359.78543 * 18 17 16 21 21 N 1.48016 * 119.95524 * 179.97438 * 20 18 17 22 22 O 1.21800 * 119.99923 * 179.97438 * 21 20 18 23 23 O 1.21802 * 119.99885 * 359.97438 * 21 20 18 24 24 C 1.37716 * 120.08749 * 359.95568 * 20 18 17 25 25 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 26 26 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00040 * 264.99233 * 12 2 1 30 30 H 1.08006 * 120.04459 * 0.02562 * 16 15 13 31 31 H 1.08000 * 119.95309 * 180.23116 * 17 16 15 32 32 H 0.96695 * 114.00196 * 270.01762 * 19 18 17 33 33 H 1.08003 * 120.04460 * 180.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8576 1.1613 -2.4119 15 6 2.6395 -0.7141 -3.5621 16 6 2.9782 -2.0685 -3.4999 17 6 3.4325 -2.7151 -4.6274 18 6 3.5642 -2.0200 -5.8240 19 8 4.0170 -2.6597 -6.9320 20 6 3.2339 -0.6716 -5.8886 21 7 3.3765 0.0639 -7.1652 22 8 3.0868 1.2456 -7.2228 23 8 3.7836 -0.5125 -8.1579 24 6 2.7737 -0.0190 -4.7666 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7088 1.1615 3.4843 29 1 2.2490 -1.6318 -1.1526 30 1 2.8796 -2.6084 -2.5697 31 1 3.6909 -3.7627 -4.5810 32 1 4.9777 -2.6315 -7.0374 33 1 2.5168 1.0288 -4.8177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160169087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:47 Heat of formation + Delta-G solvation = -56.060512 kcal Electronic energy + Delta-G solvation = -21122.183851 eV Core-core repulsion = 17537.730965 eV Total energy + Delta-G solvation = -3584.452886 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.32152 -40.41238 -39.00885 -37.15274 -36.42568 -35.06999 -32.89571 -32.11020 -30.89330 -28.88733 -26.55586 -25.40165 -24.20441 -22.91385 -21.50206 -20.11667 -19.60572 -18.83546 -18.52114 -17.62348 -17.43758 -16.46152 -16.14642 -15.68196 -15.23121 -14.73448 -14.55027 -14.44905 -13.55811 -13.37633 -12.80677 -12.64940 -12.45446 -11.88751 -11.75423 -11.59186 -11.23140 -11.17622 -11.07654 -10.96825 -10.90243 -10.47022 -10.35931 -10.02381 -9.52275 -9.38273 -9.20644 -8.69581 -8.17634 -6.24548 -4.35378 -0.39509 0.31291 1.11967 1.23212 2.52631 3.17003 3.22736 3.23758 3.31881 3.57065 3.62834 4.05976 4.23046 4.44943 4.51650 4.54760 4.85279 5.08132 5.20512 5.35004 5.53793 5.64761 5.85067 6.24790 6.67406 6.79450 6.93198 6.97955 7.19273 7.34990 7.52802 7.56969 7.74194 7.99648 8.36667 8.57243 8.80193 9.32207 10.81353 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.033467 B = 0.003680 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.442078 B = 7607.700258 C = 8194.962583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.904 3.096 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.695 5.695 13 C 0.542 3.458 14 O -0.538 6.538 15 C -0.126 4.126 16 C -0.023 4.023 17 C -0.152 4.152 18 C 0.192 3.808 19 O -0.473 6.473 20 C -0.084 4.084 21 N 0.033 4.967 22 O -0.166 6.166 23 O -0.144 6.144 24 C 0.010 3.990 25 H 0.016 0.984 26 H 0.028 0.972 27 H 0.093 0.907 28 H 0.267 0.733 29 H 0.388 0.612 30 H 0.154 0.846 31 H 0.159 0.841 32 H 0.406 0.594 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.208 -9.019 -12.804 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.071 0.929 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.210 1.210 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.343 5.343 13 C 0.326 3.674 14 O -0.417 6.417 15 C -0.130 4.130 16 C -0.042 4.042 17 C -0.171 4.171 18 C 0.144 3.856 19 O -0.286 6.286 20 C -0.169 4.169 21 N 0.553 4.447 22 O -0.379 6.379 23 O -0.363 6.363 24 C -0.010 4.010 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.222 0.778 30 H 0.172 0.828 31 H 0.176 0.824 32 H 0.267 0.733 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.242 -8.484 -12.113 15.690 hybrid contribution 0.908 -0.703 0.587 1.290 sum 6.150 -9.188 -11.526 15.971 Atomic orbital electron populations 1.22097 0.98073 0.99332 1.01202 1.18870 0.91277 0.94137 0.79441 0.92927 1.21119 1.33031 1.13475 0.90191 0.92048 1.24883 0.94666 0.94901 0.99103 1.69883 1.35420 1.22220 1.24251 0.86475 0.79173 0.79567 0.81706 1.21025 1.20104 1.20126 1.46530 1.64021 1.13530 1.10236 1.17842 0.79637 0.86909 0.83014 1.90801 1.51010 1.15208 1.84693 1.20392 1.03424 0.94293 0.94934 1.21788 0.90072 0.93175 0.99144 1.21453 1.03533 1.01858 0.90248 1.18349 0.93537 0.86519 0.87201 1.84787 1.28630 1.75041 1.40126 1.21557 1.16512 0.92634 0.86155 1.43364 0.98170 1.00969 1.02212 1.94586 1.53231 0.98627 1.91408 1.94539 1.46510 1.69997 1.25290 1.21101 0.89187 1.02289 0.88393 0.96483 0.95303 0.88873 0.92318 0.77804 0.82841 0.82377 0.73340 0.81271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.26 37.16 0.34 -3.15 16 2 C 0.26 6.28 2.56 -69.08 -0.18 6.10 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.54 -13.39 8.73 -34.44 -0.30 -13.69 16 5 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -23.78 11.32 55.43 0.63 -23.15 16 8 Si 0.90 19.60 29.54 -169.99 -5.02 14.58 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 N -0.70 -13.00 5.02 -55.96 -0.28 -13.28 16 13 C 0.54 9.92 7.73 -12.44 -0.10 9.83 16 14 O -0.54 -12.08 16.00 5.29 0.08 -12.00 16 15 C -0.13 -1.71 5.87 -104.96 -0.62 -2.33 16 16 C -0.02 -0.22 9.53 -39.22 -0.37 -0.60 16 17 C -0.15 -1.22 9.97 -39.50 -0.39 -1.62 16 18 C 0.19 1.91 6.69 -39.02 -0.26 1.65 16 19 O -0.47 -4.08 11.49 -41.02 -0.47 -4.55 16 20 C -0.08 -1.07 6.86 -79.86 -0.55 -1.62 16 21 N 0.03 0.48 4.45 34.00 0.15 0.63 16 22 O -0.17 -2.60 18.44 -29.46 -0.54 -3.14 16 23 O -0.14 -2.04 17.23 -36.51 -0.63 -2.67 16 24 C 0.01 0.14 9.09 -39.22 -0.36 -0.22 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 28 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.39 5.87 6.56 -40.82 -0.27 5.61 16 30 H 0.15 1.15 6.40 -52.48 -0.34 0.82 16 31 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.41 1.63 9.06 45.56 0.41 2.05 16 33 H 0.17 2.49 7.19 -52.48 -0.38 2.11 16 LS Contribution 299.64 15.07 4.52 4.52 Total: -1.00 -31.53 299.64 -6.53 -38.06 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -2.09 Total: 4.99 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.87 Total: -3.98 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.50 Total: -35.80 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -1.56 Total: -22.36 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.53 -6.53 -38.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160169087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.003 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds