Wall clock time and date at job start Tue Mar 31 2020 01:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46500 * 109.46746 * 239.99818 * 2 1 3 13 13 C 1.34774 * 120.00106 * 85.00589 * 12 2 1 14 14 O 1.21584 * 120.00089 * 359.97438 * 13 12 2 15 15 C 1.47604 * 119.99815 * 179.97438 * 13 12 2 16 16 C 1.39748 * 120.09042 * 359.72620 * 15 13 12 17 17 C 1.37683 * 119.91027 * 179.76199 * 16 15 13 18 18 C 1.39013 * 120.08820 * 0.48937 * 17 16 15 19 19 O 1.35714 * 119.90941 * 179.76211 * 18 17 16 20 20 C 1.38977 * 120.17680 * 359.78543 * 18 17 16 21 21 N 1.48016 * 119.95524 * 179.97438 * 20 18 17 22 22 O 1.21800 * 119.99923 * 179.97438 * 21 20 18 23 23 O 1.21802 * 119.99885 * 359.97438 * 21 20 18 24 24 C 1.37716 * 120.08749 * 359.95568 * 20 18 17 25 25 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 26 26 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00040 * 264.99233 * 12 2 1 30 30 H 1.08006 * 120.04459 * 0.02562 * 16 15 13 31 31 H 1.08000 * 119.95309 * 180.23116 * 17 16 15 32 32 H 0.96695 * 114.00196 * 270.01762 * 19 18 17 33 33 H 1.08003 * 120.04460 * 180.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8576 1.1613 -2.4119 15 6 2.6395 -0.7141 -3.5621 16 6 2.9782 -2.0685 -3.4999 17 6 3.4325 -2.7151 -4.6274 18 6 3.5642 -2.0200 -5.8240 19 8 4.0170 -2.6597 -6.9320 20 6 3.2339 -0.6716 -5.8886 21 7 3.3765 0.0639 -7.1652 22 8 3.0868 1.2456 -7.2228 23 8 3.7836 -0.5125 -8.1579 24 6 2.7737 -0.0190 -4.7666 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7088 1.1615 3.4843 29 1 2.2490 -1.6318 -1.1526 30 1 2.8796 -2.6084 -2.5697 31 1 3.6909 -3.7627 -4.5810 32 1 4.9777 -2.6315 -7.0374 33 1 2.5168 1.0288 -4.8177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160169087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:46 Heat of formation + Delta-G solvation = -78.407506 kcal Electronic energy + Delta-G solvation = -21123.152890 eV Core-core repulsion = 17537.730965 eV Total energy + Delta-G solvation = -3585.421925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.38709 -41.50917 -40.22830 -38.15036 -37.47709 -36.82369 -34.53402 -33.23365 -32.02310 -30.51121 -27.60853 -27.34813 -25.37171 -23.84379 -22.99639 -21.64085 -20.70901 -19.89847 -19.59002 -18.78280 -18.67982 -17.77641 -17.48332 -16.77276 -16.65001 -16.15093 -16.02197 -15.41780 -15.03741 -14.55982 -14.27538 -13.86375 -13.59369 -13.47647 -13.02783 -12.89501 -12.82427 -12.74082 -12.68013 -12.33653 -12.27832 -12.16617 -11.85342 -11.15430 -11.08299 -10.88837 -10.60431 -10.33044 -9.85506 -8.17763 -6.35930 -1.37026 -0.64941 0.13478 0.22827 1.47377 1.48926 1.49983 1.57179 2.17210 2.35821 2.46216 2.57308 3.13680 3.24979 3.47923 3.56816 3.61586 3.90540 4.33756 4.46749 4.64953 4.74279 4.78129 4.89807 5.00773 5.06096 5.23894 5.38000 5.53299 5.64579 5.84969 6.06413 6.41931 6.45176 6.69483 6.78344 7.25608 7.41160 8.88474 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.033467 B = 0.003680 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.442078 B = 7607.700258 C = 8194.962583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.001 0.999 4 C -0.547 4.547 5 H 0.082 0.918 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.291 1.291 10 H -0.261 1.261 11 H -0.270 1.270 12 N -0.688 5.688 13 C 0.542 3.458 14 O -0.592 6.592 15 C -0.143 4.143 16 C 0.000 4.000 17 C -0.126 4.126 18 C 0.215 3.785 19 O -0.476 6.476 20 C -0.100 4.100 21 N 0.034 4.966 22 O -0.226 6.226 23 O -0.118 6.118 24 C 0.001 3.999 25 H 0.010 0.990 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.265 0.735 29 H 0.409 0.591 30 H 0.184 0.816 31 H 0.208 0.792 32 H 0.430 0.570 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.795 -13.515 -13.090 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.019 0.981 4 C -0.585 4.585 5 H 0.100 0.900 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.217 1.217 10 H -0.186 1.186 11 H -0.195 1.195 12 N -0.337 5.337 13 C 0.329 3.671 14 O -0.475 6.475 15 C -0.148 4.148 16 C -0.019 4.019 17 C -0.144 4.144 18 C 0.167 3.833 19 O -0.292 6.292 20 C -0.185 4.185 21 N 0.550 4.450 22 O -0.425 6.425 23 O -0.347 6.347 24 C -0.019 4.019 25 H 0.030 0.970 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.247 0.753 30 H 0.201 0.799 31 H 0.225 0.775 32 H 0.295 0.705 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.832 -12.922 -12.396 19.166 hybrid contribution 0.492 0.554 0.528 0.910 sum 7.323 -12.368 -11.868 18.640 Atomic orbital electron populations 1.21928 0.98127 0.99825 0.99642 1.18442 0.91249 0.92152 0.81549 0.98098 1.21502 1.32838 1.13820 0.90358 0.90045 1.25809 0.94805 0.95515 1.02426 1.70053 1.36911 1.23948 1.24735 0.85376 0.78656 0.78768 0.77420 1.21703 1.18553 1.19482 1.46137 1.64121 1.14369 1.09074 1.18464 0.78288 0.86362 0.84023 1.90773 1.53174 1.17861 1.85674 1.19848 1.06496 0.96007 0.92399 1.22090 0.87711 0.90952 1.01148 1.21879 1.01022 1.03466 0.88059 1.18551 0.91555 0.84983 0.88224 1.84739 1.30805 1.74188 1.39465 1.21654 1.18377 0.93712 0.84742 1.43618 0.97707 1.00857 1.02841 1.94606 1.56181 0.99719 1.92004 1.94484 1.44733 1.69554 1.25889 1.20849 0.90236 1.01450 0.89369 0.97046 0.93554 0.91427 0.92566 0.75322 0.79882 0.77491 0.70503 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.58 9.26 71.98 0.67 -5.91 16 2 C 0.27 13.09 2.56 44.24 0.11 13.21 16 3 H 0.00 0.06 7.58 -2.39 -0.02 0.05 16 4 C -0.55 -26.78 8.73 25.60 0.22 -26.56 16 5 H 0.08 3.57 7.74 -2.91 -0.02 3.54 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -50.86 11.32 21.45 0.24 -50.62 16 8 Si 0.97 39.49 29.54 68.60 2.03 41.52 16 9 H -0.29 -12.01 7.11 99.48 0.71 -11.31 16 10 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 11 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 12 N -0.69 -25.37 5.02 -449.22 -2.25 -27.62 16 13 C 0.54 20.24 7.73 86.72 0.67 20.91 16 14 O -0.59 -28.45 16.00 -3.98 -0.06 -28.52 16 15 C -0.14 -3.75 5.87 -20.08 -0.12 -3.87 16 16 C 0.00 -0.01 9.53 22.50 0.21 0.21 16 17 C -0.13 -1.27 9.97 22.32 0.22 -1.05 16 18 C 0.22 3.38 6.69 22.63 0.15 3.53 16 19 O -0.48 -5.83 11.49 -69.16 -0.79 -6.63 16 20 C -0.10 -2.42 6.86 36.43 0.25 -2.17 16 21 N 0.03 0.97 4.45 -46.33 -0.21 0.77 16 22 O -0.23 -7.59 18.44 18.89 0.35 -7.24 16 23 O -0.12 -3.13 17.23 25.62 0.44 -2.69 16 24 C 0.00 0.03 9.09 22.50 0.20 0.24 16 25 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 28 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 29 H 0.41 11.28 6.56 -92.71 -0.61 10.68 16 30 H 0.18 1.68 6.40 -2.91 -0.02 1.66 16 31 H 0.21 0.28 8.06 -2.91 -0.02 0.26 16 32 H 0.43 1.19 9.06 -74.06 -0.67 0.52 16 33 H 0.14 4.69 7.19 -2.91 -0.02 4.66 16 Total: -1.00 -73.72 299.64 2.70 -71.02 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -0.09 Total: 10.26 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 3.05 Total: -0.26 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -2.22 Total: -77.47 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -0.07 Total: -45.07 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -73.72 2.70 -71.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160169087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.388 kcal (2) G-P(sol) polarization free energy of solvation -73.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds