Wall clock time and date at job start Tue Mar 31 2020 01:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47652 * 2 1 4 4 C 1.50700 * 109.47160 * 239.99949 * 2 1 3 5 5 H 1.08001 * 119.99623 * 240.00472 * 4 2 1 6 6 C 1.37875 * 120.00245 * 59.99524 * 4 2 1 7 7 N 1.31518 * 119.99781 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00068 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46831 * 90.00439 * 8 6 4 10 10 H 1.48503 * 109.47053 * 210.00241 * 8 6 4 11 11 H 1.48498 * 109.46911 * 330.00497 * 8 6 4 12 12 N 1.46505 * 109.47039 * 119.99961 * 2 1 3 13 13 C 1.34777 * 119.99894 * 274.99793 * 12 2 1 14 14 O 1.21592 * 119.99812 * 0.02562 * 13 12 2 15 15 C 1.47605 * 120.00088 * 180.02562 * 13 12 2 16 16 C 1.39752 * 120.08299 * 0.02562 * 15 13 12 17 17 C 1.37679 * 119.90609 * 180.02562 * 16 15 13 18 18 C 1.39017 * 120.09166 * 359.97438 * 17 16 15 19 19 O 1.35715 * 119.91390 * 179.97438 * 18 17 16 20 20 C 1.38976 * 120.17316 * 0.25686 * 18 17 16 21 21 N 1.48024 * 119.95485 * 179.72452 * 20 18 17 22 22 O 1.21794 * 120.00073 * 180.02562 * 21 20 18 23 23 O 1.21797 * 119.99699 * 359.97438 * 21 20 18 24 24 C 1.37725 * 120.08899 * 359.48651 * 20 18 17 25 25 H 1.09005 * 109.46735 * 300.00035 * 1 2 3 26 26 H 1.09001 * 109.46944 * 60.00062 * 1 2 3 27 27 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99908 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00043 * 94.99890 * 12 2 1 30 30 H 1.07996 * 120.04906 * 359.97438 * 16 15 13 31 31 H 1.08002 * 119.95459 * 179.97438 * 17 16 15 32 32 H 0.96701 * 113.99712 * 90.00508 * 19 18 17 33 33 H 1.07997 * 120.04401 * 180.25748 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.3427 -2.1618 -4.4117 10 1 2.4866 -0.1416 -5.1123 11 1 3.6293 -1.7585 -3.7121 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8575 1.1614 2.4118 15 6 2.6396 -0.7139 3.5623 16 6 2.9735 -2.0696 3.5013 17 6 3.4320 -2.7149 4.6277 18 6 3.5636 -2.0198 5.8243 19 8 4.0155 -2.6596 6.9326 20 6 3.2281 -0.6727 5.8902 21 7 3.3643 0.0612 7.1684 22 8 3.0701 1.2417 7.2272 23 8 3.7698 -0.5155 8.1616 24 6 2.7737 -0.0186 4.7666 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7094 1.1616 -3.4844 29 1 2.2490 -1.6318 1.1527 30 1 2.8711 -2.6104 2.5721 31 1 3.6899 -3.7627 4.5815 32 1 4.9763 -2.6317 7.0386 33 1 2.5171 1.0292 4.8176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160169201.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:49 Heat of formation + Delta-G solvation = -56.123654 kcal Electronic energy + Delta-G solvation = -21122.186967 eV Core-core repulsion = 17537.731343 eV Total energy + Delta-G solvation = -3584.455624 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.32153 -40.41203 -39.00772 -37.15241 -36.42623 -35.06975 -32.89574 -32.10980 -30.89360 -28.88792 -26.55504 -25.40393 -24.20470 -22.91347 -21.50215 -20.11705 -19.60529 -18.83396 -18.51989 -17.62468 -17.43765 -16.46147 -16.14852 -15.68460 -15.23198 -14.73402 -14.54890 -14.44833 -13.55703 -13.37689 -12.80259 -12.65336 -12.45836 -11.89029 -11.75510 -11.59137 -11.23602 -11.17552 -11.07318 -10.96795 -10.89771 -10.46754 -10.36383 -10.02312 -9.52293 -9.38232 -9.19566 -8.70312 -8.17587 -6.24814 -4.35546 -0.39454 0.31363 1.12028 1.23272 2.52704 3.15868 3.22930 3.24637 3.31701 3.57105 3.62797 4.06054 4.22912 4.44963 4.51677 4.54833 4.85285 5.07985 5.20541 5.35010 5.53820 5.64814 5.85113 6.24869 6.67253 6.79444 6.93105 6.97866 7.19219 7.34956 7.52859 7.57108 7.74119 7.99526 8.36590 8.57279 8.80206 9.32128 10.81134 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.033485 B = 0.003680 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.986962 B = 7607.817742 C = 8196.313802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.053 0.947 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.695 5.695 13 C 0.542 3.458 14 O -0.538 6.538 15 C -0.126 4.126 16 C -0.023 4.023 17 C -0.152 4.152 18 C 0.191 3.809 19 O -0.473 6.473 20 C -0.084 4.084 21 N 0.033 4.967 22 O -0.166 6.166 23 O -0.144 6.144 24 C 0.010 3.990 25 H 0.016 0.984 26 H 0.093 0.907 27 H 0.028 0.972 28 H 0.266 0.734 29 H 0.388 0.612 30 H 0.154 0.846 31 H 0.159 0.841 32 H 0.406 0.594 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.220 -9.024 12.819 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.071 0.929 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.343 5.343 13 C 0.326 3.674 14 O -0.417 6.417 15 C -0.130 4.130 16 C -0.042 4.042 17 C -0.171 4.171 18 C 0.144 3.856 19 O -0.286 6.286 20 C -0.168 4.168 21 N 0.553 4.447 22 O -0.379 6.379 23 O -0.363 6.363 24 C -0.010 4.010 25 H 0.035 0.965 26 H 0.111 0.889 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.222 0.778 30 H 0.172 0.828 31 H 0.176 0.824 32 H 0.267 0.733 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.263 -8.489 12.129 15.712 hybrid contribution 0.895 -0.700 -0.591 1.281 sum 6.158 -9.189 11.537 15.984 Atomic orbital electron populations 1.22098 0.98072 0.99328 1.01208 1.18880 0.91279 0.94149 0.79455 0.92918 1.21156 1.32954 1.13447 0.90178 0.91996 1.24885 0.94684 0.94892 0.99115 1.69893 1.35526 1.22218 1.24138 0.86419 0.79140 0.79292 0.82086 1.20470 1.20964 1.19832 1.46530 1.64023 1.13529 1.10234 1.17846 0.79634 0.86911 0.83015 1.90803 1.51013 1.15206 1.84696 1.20390 1.03440 0.94267 0.94948 1.21786 0.90073 0.93182 0.99134 1.21455 1.03503 1.01855 0.90287 1.18349 0.93520 0.86540 0.87205 1.84791 1.28644 1.75035 1.40104 1.21558 1.16546 0.92667 0.86077 1.43363 0.98166 1.00956 1.02228 1.94584 1.53059 0.98745 1.91468 1.94538 1.46591 1.69891 1.25308 1.21099 0.89211 1.02285 0.88375 0.96485 0.88863 0.95307 0.92377 0.77803 0.82844 0.82377 0.73341 0.81270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.26 37.16 0.34 -3.15 16 2 C 0.26 6.27 2.56 -69.08 -0.18 6.09 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.54 -13.37 8.73 -34.44 -0.30 -13.67 16 5 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -23.77 11.32 55.43 0.63 -23.15 16 8 Si 0.90 19.61 29.54 -169.99 -5.02 14.58 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 12 N -0.70 -13.00 5.02 -55.95 -0.28 -13.28 16 13 C 0.54 9.92 7.73 -12.44 -0.10 9.82 16 14 O -0.54 -12.09 16.00 5.28 0.08 -12.00 16 15 C -0.13 -1.71 5.87 -104.96 -0.62 -2.33 16 16 C -0.02 -0.22 9.53 -39.22 -0.37 -0.59 16 17 C -0.15 -1.22 9.97 -39.50 -0.39 -1.62 16 18 C 0.19 1.91 6.69 -39.02 -0.26 1.65 16 19 O -0.47 -4.08 11.49 -41.02 -0.47 -4.55 16 20 C -0.08 -1.07 6.86 -79.86 -0.55 -1.61 16 21 N 0.03 0.48 4.45 34.01 0.15 0.63 16 22 O -0.17 -2.60 18.44 -29.46 -0.54 -3.15 16 23 O -0.14 -2.04 17.23 -36.51 -0.63 -2.67 16 24 C 0.01 0.14 9.09 -39.22 -0.36 -0.22 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.39 5.87 6.56 -40.82 -0.27 5.61 16 30 H 0.15 1.15 6.39 -52.49 -0.34 0.82 16 31 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.41 1.63 9.06 45.56 0.41 2.04 16 33 H 0.17 2.49 7.19 -52.49 -0.38 2.11 16 LS Contribution 299.65 15.07 4.52 4.52 Total: -1.00 -31.56 299.65 -6.53 -38.09 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.09 Total: 4.95 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.87 Total: -3.98 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.50 Total: -35.79 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -1.56 Total: -22.36 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.56 -6.53 -38.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160169201.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.037 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds