Wall clock time and date at job start Tue Mar 31 2020 01:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47375 * 2 1 4 4 C 1.50701 * 109.46920 * 239.99875 * 2 1 3 5 5 O 1.20816 * 120.00268 * 246.21800 * 4 2 1 6 6 O 1.34228 * 119.99625 * 66.22139 * 4 2 1 7 7 C 1.45203 * 117.00215 * 185.10750 * 6 4 2 8 8 C 1.52999 * 109.47717 * 184.86959 * 7 6 4 9 9 C 1.50704 * 115.54880 * 294.86223 * 8 7 6 10 10 H 1.07991 * 120.00049 * 95.15689 * 9 8 7 11 11 C 1.37880 * 119.99779 * 274.88458 * 9 8 7 12 12 N 1.31513 * 119.99839 * 355.42701 * 11 9 8 13 13 Si 1.86793 * 119.99984 * 175.42787 * 11 9 8 14 14 H 1.48503 * 109.46812 * 89.99750 * 13 11 9 15 15 H 1.48500 * 109.47305 * 209.99835 * 13 11 9 16 16 H 1.48497 * 109.47091 * 329.99866 * 13 11 9 17 17 C 1.52997 * 117.49773 * 80.52815 * 8 7 6 18 18 C 1.52994 * 117.49998 * 149.18834 * 8 7 6 19 19 C 1.50701 * 109.47267 * 120.00278 * 2 1 3 20 20 C 1.33381 * 125.20478 * 240.00104 * 19 2 1 21 21 C 1.38418 * 114.92435 * 179.97438 * 20 19 2 22 22 C 1.33390 * 114.92250 * 359.97438 * 21 20 19 23 23 S 1.75885 * 125.20106 * 59.68749 * 19 2 1 24 24 H 1.09001 * 109.46868 * 304.82992 * 1 2 3 25 25 H 1.08999 * 109.47218 * 64.82588 * 1 2 3 26 26 H 1.08995 * 109.47393 * 184.83289 * 1 2 3 27 27 H 1.09000 * 109.46768 * 64.86746 * 7 6 4 28 28 H 1.09001 * 109.47302 * 304.87588 * 7 6 4 29 29 H 0.97000 * 120.00197 * 185.00255 * 12 11 9 30 30 H 1.09001 * 117.49735 * 215.00941 * 17 8 7 31 31 H 1.09001 * 117.50031 * 0.02564 * 17 8 7 32 32 H 1.09002 * 117.49808 * 359.97438 * 18 8 7 33 33 H 1.09004 * 117.49917 * 144.97377 * 18 8 7 34 34 H 1.08000 * 122.53812 * 359.97438 * 20 19 2 35 35 H 1.08000 * 122.54106 * 180.02562 * 21 20 19 36 36 H 1.07995 * 125.20816 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6315 -1.7541 -1.1232 6 8 1.8141 -0.1836 -2.4456 7 6 2.2244 -0.9761 -3.5911 8 6 2.0097 -0.1689 -4.8730 9 6 0.5759 0.1569 -5.2035 10 1 0.1549 1.1053 -4.9043 11 6 -0.1967 -0.7536 -5.8928 12 7 0.3414 -1.8671 -6.3403 13 14 -2.0075 -0.4056 -6.1911 14 1 -2.1662 0.3255 -7.4739 15 1 -2.7538 -1.6878 -6.2564 16 1 -2.5420 0.4222 -5.0801 17 6 3.0728 0.8680 -5.2412 18 6 2.9618 -0.4322 -6.0413 19 6 2.0324 -0.7105 1.2304 20 6 2.8025 -0.1648 2.1729 21 6 3.1396 -1.0125 3.2138 22 6 2.6428 -2.2467 3.1170 23 16 1.6865 -2.3838 1.6472 24 1 -0.3633 0.5870 0.8436 25 1 -0.3633 0.4371 -0.9300 26 1 -0.3634 -1.0239 0.0866 27 1 1.6303 -1.8890 -3.6328 28 1 3.2793 -1.2332 -3.4959 29 1 -0.1825 -2.4734 -6.8869 30 1 2.7351 1.7858 -5.7225 31 1 3.9253 0.9749 -4.5705 32 1 3.7413 -1.1802 -5.8966 33 1 2.5510 -0.3702 -7.0491 34 1 3.1376 0.8609 2.1273 35 1 3.7573 -0.6984 4.0422 36 1 2.8009 -3.0395 3.8331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174733808.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:58 Heat of formation + Delta-G solvation = -46.858814 kcal Electronic energy + Delta-G solvation = -19410.880756 eV Core-core repulsion = 16373.120100 eV Total energy + Delta-G solvation = -3037.760656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54621 -39.02851 -38.40877 -36.95154 -35.03905 -34.00805 -29.65981 -28.77786 -27.35618 -25.83240 -24.33261 -22.97344 -21.65822 -21.20346 -20.30994 -18.58300 -18.47794 -17.89633 -17.36440 -16.81640 -16.52149 -16.36037 -15.58897 -15.11769 -14.68903 -14.30433 -14.00792 -13.76731 -13.60999 -13.54663 -13.18767 -13.15841 -12.88944 -12.83025 -12.64502 -12.49111 -12.38581 -12.08651 -11.70222 -11.63829 -11.49756 -11.25854 -10.88777 -10.46042 -10.10018 -9.62856 -9.33410 -8.11769 -6.24952 0.04214 0.73605 1.14197 1.21632 1.41551 1.43948 1.53538 1.68112 2.03035 2.42335 3.15374 3.39077 3.45889 3.78597 3.98526 4.11671 4.18082 4.26780 4.36702 4.44340 4.62953 4.64616 4.69856 4.76377 4.78481 4.87482 4.96276 5.14819 5.18033 5.21132 5.36930 5.42450 5.57850 5.61311 5.69221 5.76204 6.35491 6.78860 6.80676 7.43799 8.95596 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.024072 B = 0.004512 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.895110 B = 6203.996979 C = 6683.864567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.005 4.005 3 H 0.149 0.851 4 C 0.448 3.552 5 O -0.536 6.536 6 O -0.341 6.341 7 C 0.130 3.870 8 C 0.002 3.998 9 C -0.501 4.501 10 H 0.057 0.943 11 C 0.023 3.977 12 N -0.911 5.911 13 Si 0.951 3.049 14 H -0.273 1.273 15 H -0.287 1.287 16 H -0.265 1.265 17 C -0.178 4.178 18 C -0.142 4.142 19 C -0.186 4.186 20 C -0.126 4.126 21 C -0.141 4.141 22 C -0.215 4.215 23 S 0.079 5.921 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.046 0.954 29 H 0.261 0.739 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 3.992 17.910 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 H 0.167 0.833 4 C 0.291 3.709 5 O -0.426 6.426 6 O -0.257 6.257 7 C 0.056 3.944 8 C 0.001 3.999 9 C -0.539 4.539 10 H 0.075 0.925 11 C -0.177 4.177 12 N -0.549 5.549 13 Si 0.776 3.224 14 H -0.199 1.199 15 H -0.213 1.213 16 H -0.189 1.189 17 C -0.215 4.215 18 C -0.179 4.179 19 C -0.303 4.303 20 C -0.157 4.157 21 C -0.172 4.172 22 C -0.350 4.350 23 S 0.344 5.656 24 H 0.124 0.876 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.183 0.817 35 H 0.187 0.813 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.284 2.301 17.183 17.486 hybrid contribution 0.043 0.475 -0.131 0.495 sum 2.327 2.776 17.052 17.432 Atomic orbital electron populations 1.21850 0.89953 1.03010 1.04947 1.19518 0.98816 1.00466 0.83728 0.83309 1.24387 0.76194 0.84087 0.86200 1.90622 1.39595 1.24699 1.87732 1.86529 1.75377 1.49078 1.14708 1.22495 0.96417 0.92824 0.82639 1.18901 0.92123 0.98483 0.90356 1.20632 0.94716 1.01981 1.36542 0.92456 1.25722 1.02156 0.94559 0.95300 1.70095 1.38126 1.11770 1.34916 0.85657 0.80424 0.77445 0.78860 1.19853 1.21293 1.18933 1.23007 1.01087 0.93502 1.03906 1.22430 1.00911 0.98050 0.96556 1.24001 1.07935 0.97532 1.00868 1.20477 0.98445 1.02822 0.93957 1.20444 1.03106 0.92658 1.00948 1.26041 1.05189 1.02574 1.01244 1.84678 1.51122 1.11403 1.18422 0.87611 0.90920 0.93242 0.94482 0.93529 0.93023 0.89530 0.89306 0.90786 0.91033 0.81749 0.81326 0.79672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.13 71.98 0.66 -2.83 16 2 C 0.00 -0.13 3.20 -12.28 -0.04 -0.17 16 3 H 0.15 3.17 8.08 -2.39 -0.02 3.15 16 4 C 0.45 17.04 7.18 71.24 0.51 17.55 16 5 O -0.54 -23.15 14.79 22.00 0.33 -22.82 16 6 O -0.34 -14.80 10.16 -51.40 -0.52 -15.32 16 7 C 0.13 6.27 5.38 71.98 0.39 6.65 16 8 C 0.00 0.09 1.69 -52.93 -0.09 0.00 16 9 C -0.50 -27.21 8.77 25.60 0.22 -26.99 16 10 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 11 C 0.02 1.24 5.43 84.66 0.46 1.70 16 12 N -0.91 -52.05 12.65 21.45 0.27 -51.78 16 13 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 17 C -0.18 -7.55 9.96 30.62 0.30 -7.24 16 18 C -0.14 -6.65 9.14 30.62 0.28 -6.37 16 19 C -0.19 -4.84 4.66 24.59 0.11 -4.73 16 20 C -0.13 -2.61 10.01 21.21 0.21 -2.40 16 21 C -0.14 -2.59 10.18 21.21 0.22 -2.38 16 22 C -0.21 -4.35 11.23 66.72 0.75 -3.60 16 23 S 0.08 2.15 21.89 -56.49 -1.24 0.91 16 24 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 1.33 7.83 -2.39 -0.02 1.31 16 27 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 2.14 7.92 -2.39 -0.02 2.12 16 29 H 0.26 14.25 8.32 -92.71 -0.77 13.48 16 30 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 31 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.07 3.60 8.14 -2.39 -0.02 3.58 16 34 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.19 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -65.32 327.45 5.92 -59.40 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.06 Total: 15.40 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 3.99 Total: -30.79 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.27 Total: -51.78 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.20 Total: -38.14 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -1.24 Total: 0.91 kcal Total: -65.32 5.92 -59.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174733808.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.542 kcal (2) G-P(sol) polarization free energy of solvation -65.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds