Wall clock time and date at job start Tue Mar 31 2020 01:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99910 * 2 1 4 4 H 1.48505 * 109.46934 * 269.99546 * 3 2 1 5 5 H 1.48497 * 109.47458 * 29.99837 * 3 2 1 6 6 H 1.48501 * 109.47211 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99969 * 173.70193 * 7 2 1 9 9 C 1.50698 * 119.99927 * 353.70536 * 7 2 1 10 10 C 1.52998 * 115.55147 * 86.11194 * 9 7 2 11 11 O 1.45203 * 109.47420 * 65.10005 * 10 9 7 12 12 C 1.34230 * 117.00015 * 180.02562 * 11 10 9 13 13 O 1.20824 * 119.99928 * 0.02562 * 12 11 10 14 14 C 1.50692 * 120.00040 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47291 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.47146 * 179.97438 * 15 14 12 17 17 C 1.38426 * 122.53814 * 90.00147 * 16 15 14 18 18 C 1.33391 * 114.92146 * 179.97438 * 17 16 15 19 19 S 1.75882 * 109.59395 * 359.97438 * 18 17 16 20 20 C 1.33389 * 122.54280 * 269.97386 * 16 15 14 21 21 C 1.53004 * 117.49730 * 231.77359 * 9 7 2 22 22 C 1.52992 * 117.50330 * 300.43475 * 9 7 2 23 23 H 0.97001 * 119.99625 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.46986 * 305.10494 * 10 9 7 25 25 H 1.08998 * 109.47318 * 185.10679 * 10 9 7 26 26 H 1.09005 * 109.47314 * 59.99728 * 14 12 11 27 27 H 1.09008 * 109.47315 * 300.00218 * 14 12 11 28 28 H 1.08997 * 109.47425 * 59.99839 * 15 14 12 29 29 H 1.08999 * 109.47191 * 299.99703 * 15 14 12 30 30 H 1.08000 * 122.53887 * 359.70437 * 17 16 15 31 31 H 1.07994 * 125.20155 * 179.97438 * 18 17 16 32 32 H 1.07999 * 125.19895 * 0.05960 * 20 16 15 33 33 H 1.09005 * 117.49801 * 215.00460 * 21 9 7 34 34 H 1.08991 * 117.49816 * 0.02764 * 21 9 7 35 35 H 1.09003 * 117.49709 * 359.97438 * 22 9 7 36 36 H 1.09003 * 117.50199 * 144.97276 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0797 -1.1970 -0.1021 9 6 1.2578 -2.4951 0.1442 10 6 0.7193 -3.0940 -1.1566 11 8 1.8300 -3.4658 -2.0147 12 6 1.5261 -4.0097 -3.2037 13 8 0.3703 -4.1693 -3.5172 14 6 2.6265 -4.4211 -4.1474 15 6 2.0137 -5.0072 -5.4208 16 6 3.1142 -5.4181 -6.3649 17 6 3.6740 -6.6840 -6.3499 18 6 4.6367 -6.8836 -7.2514 19 16 4.8786 -5.4164 -8.1906 20 6 3.6223 -4.5897 -7.2786 21 6 1.7341 -3.4673 1.2254 22 6 0.4254 -2.6956 1.4120 23 1 -0.4850 0.8401 -0.0004 24 1 0.0977 -2.3573 -1.6657 25 1 0.1232 -3.9781 -0.9302 26 1 3.2551 -5.1714 -3.6676 27 1 3.2307 -3.5504 -4.4027 28 1 1.3855 -4.2567 -5.9005 29 1 1.4094 -5.8778 -5.1659 30 1 3.3584 -7.4506 -5.6576 31 1 5.1839 -7.8052 -7.3842 32 1 3.3101 -3.5676 -7.4344 33 1 1.6636 -4.5335 1.0100 34 1 2.5872 -3.1656 1.8331 35 1 0.4181 -1.8866 2.1425 36 1 -0.5064 -3.2538 1.3194 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174752636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:25 Heat of formation + Delta-G solvation = -54.579225 kcal Electronic energy + Delta-G solvation = -18796.394965 eV Core-core repulsion = 15758.299526 eV Total energy + Delta-G solvation = -3038.095439 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.40358 -39.33732 -38.54362 -36.94746 -34.03354 -33.94352 -30.30384 -28.77565 -27.43022 -26.23399 -23.58771 -22.97042 -21.49538 -21.18658 -19.62788 -18.75100 -18.40816 -18.11849 -17.48914 -17.02609 -16.56473 -16.06852 -15.69398 -15.10150 -14.73582 -14.35149 -13.93127 -13.87928 -13.68557 -13.52211 -13.25675 -12.96682 -12.93065 -12.84858 -12.72937 -12.37554 -12.09075 -12.02003 -11.69827 -11.64680 -11.60381 -11.34062 -10.77225 -10.49281 -10.08633 -9.68625 -9.26607 -8.14264 -6.25574 0.11929 0.79866 1.10876 1.28152 1.41424 1.43080 1.53366 1.66820 2.01085 2.42280 3.14732 3.42324 3.74261 3.95785 4.07194 4.15139 4.22966 4.24746 4.39913 4.47600 4.57391 4.60586 4.66071 4.70242 4.85025 4.87966 4.96802 5.09860 5.18339 5.18471 5.46756 5.52331 5.58520 5.60097 5.73837 5.76193 6.35668 6.79866 6.86483 7.43299 8.94594 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.022168 B = 0.003454 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.795196 B = 8104.176604 C = 8783.161869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.505 4.505 8 H 0.056 0.944 9 C 0.003 3.997 10 C 0.128 3.872 11 O -0.350 6.350 12 C 0.449 3.551 13 O -0.552 6.552 14 C -0.096 4.096 15 C -0.041 4.041 16 C -0.106 4.106 17 C -0.142 4.142 18 C -0.210 4.210 19 S 0.097 5.903 20 C -0.221 4.221 21 C -0.177 4.177 22 C -0.147 4.147 23 H 0.261 0.739 24 H 0.038 0.962 25 H 0.048 0.952 26 H 0.127 0.873 27 H 0.116 0.884 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.155 0.845 31 H 0.187 0.813 32 H 0.171 0.829 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.247 -12.556 -13.408 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.003 3.997 10 C 0.055 3.945 11 O -0.265 6.265 12 C 0.294 3.706 13 O -0.444 6.444 14 C -0.134 4.134 15 C -0.081 4.081 16 C -0.119 4.119 17 C -0.172 4.172 18 C -0.345 4.345 19 S 0.360 5.640 20 C -0.356 4.356 21 C -0.214 4.214 22 C -0.185 4.185 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.145 0.855 27 H 0.134 0.866 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.172 0.828 31 H 0.204 0.796 32 H 0.189 0.811 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.731 -12.056 -14.661 21.331 hybrid contribution -1.205 0.809 1.254 1.918 sum 8.526 -11.247 -13.407 19.466 Atomic orbital electron populations 1.70115 1.07166 1.27316 1.50161 1.25733 0.95607 1.02180 0.94253 0.85640 0.78981 0.79388 0.78180 1.20393 1.20824 1.18936 1.20649 0.92980 0.89861 1.50816 0.92624 1.18884 1.00560 0.94786 0.85489 1.22483 0.85663 0.96137 0.90262 1.86530 1.40684 1.71233 1.28094 1.24631 0.91046 0.73269 0.81651 1.90597 1.23926 1.53468 1.76390 1.21432 0.94771 1.04459 0.92700 1.20004 0.94763 1.01634 0.91732 1.18883 0.99905 0.94398 0.98705 1.20315 0.98094 0.97421 1.01385 1.25918 1.04359 1.02780 1.01447 1.84241 1.36792 1.05298 1.37635 1.25752 1.02992 1.04675 1.02179 1.23022 0.97573 0.96462 1.04377 1.22471 0.93663 1.01303 1.01023 0.93010 0.94367 0.93376 0.85525 0.86631 0.91064 0.90089 0.82790 0.79584 0.81147 0.89012 0.89597 0.91211 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.17 12.88 21.45 0.28 -51.90 16 2 C 0.02 1.23 5.38 84.65 0.46 1.69 16 3 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.51 -27.71 8.77 25.60 0.22 -27.48 16 8 H 0.06 3.04 7.82 -2.91 -0.02 3.02 16 9 C 0.00 0.16 1.62 -52.93 -0.09 0.08 16 10 C 0.13 6.18 5.29 71.98 0.38 6.56 16 11 O -0.35 -15.18 10.16 -51.42 -0.52 -15.70 16 12 C 0.45 16.54 7.96 71.23 0.57 17.11 16 13 O -0.55 -23.29 15.73 21.97 0.35 -22.94 16 14 C -0.10 -2.40 5.79 29.84 0.17 -2.22 16 15 C -0.04 -0.94 4.76 29.85 0.14 -0.79 16 16 C -0.11 -2.09 5.06 -20.92 -0.11 -2.19 16 17 C -0.14 -2.40 9.98 21.22 0.21 -2.19 16 18 C -0.21 -3.09 11.23 66.72 0.75 -2.34 16 19 S 0.10 1.53 23.34 -56.49 -1.32 0.22 16 20 C -0.22 -4.12 10.98 66.72 0.73 -3.38 16 21 C -0.18 -7.45 9.96 30.62 0.30 -7.14 16 22 C -0.15 -6.80 9.37 30.62 0.29 -6.51 16 23 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 24 H 0.04 2.08 8.13 -2.38 -0.02 2.06 16 25 H 0.05 2.16 8.08 -2.39 -0.02 2.15 16 26 H 0.13 2.59 8.14 -2.38 -0.02 2.57 16 27 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 28 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 29 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 30 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.19 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 34 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 35 H 0.07 3.44 8.14 -2.39 -0.02 3.42 16 36 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -64.53 330.66 5.91 -58.62 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.06 Total: 15.28 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 4.04 Total: -28.82 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.28 Total: -51.90 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.18 Total: -38.64 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.32 Total: 0.22 kcal Total: -64.53 5.91 -58.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174752636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.042 kcal (2) G-P(sol) polarization free energy of solvation -64.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds