Wall clock time and date at job start Tue Mar 31 2020 01:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38431 * 122.53757 * 2 1 4 4 C 1.33381 * 114.92071 * 179.97438 * 3 2 1 5 5 S 1.75889 * 109.59451 * 359.76054 * 4 3 2 6 6 C 1.33383 * 122.54138 * 179.97438 * 2 1 3 7 7 C 1.50694 * 125.20441 * 359.97438 * 6 2 1 8 8 H 1.08995 * 115.55287 * 334.33399 * 7 6 2 9 9 C 1.53078 * 117.51625 * 188.60825 * 7 6 2 10 10 C 1.52999 * 59.98759 * 252.52546 * 9 7 6 11 11 H 1.08998 * 117.49989 * 252.50349 * 10 9 7 12 12 C 1.50698 * 117.50087 * 107.49767 * 10 9 7 13 13 O 1.20833 * 120.00261 * 291.25930 * 12 10 9 14 14 O 1.34231 * 120.00102 * 111.25235 * 12 10 9 15 15 C 1.45194 * 116.99946 * 179.97438 * 14 12 10 16 16 C 1.53003 * 109.46822 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47202 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99685 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00216 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00069 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99806 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 90.00621 * 21 19 17 23 23 H 1.48503 * 109.47399 * 210.00111 * 21 19 17 24 24 H 1.48498 * 109.47295 * 330.00717 * 21 19 17 25 25 H 1.08999 * 109.47285 * 270.01584 * 1 2 3 26 26 H 1.08999 * 109.47505 * 30.02421 * 1 2 3 27 27 H 1.09006 * 109.47132 * 150.02273 * 1 2 3 28 28 H 1.08003 * 122.53544 * 0.02562 * 3 2 1 29 29 H 1.07998 * 125.20344 * 180.02562 * 4 3 2 30 30 H 1.09000 * 117.49727 * 145.03627 * 9 7 6 31 31 H 1.09003 * 117.51159 * 0.02562 * 9 7 6 32 32 H 1.09008 * 109.47164 * 60.00773 * 15 14 12 33 33 H 1.08996 * 109.47763 * 299.99791 * 15 14 12 34 34 H 1.08999 * 109.47344 * 60.00396 * 16 15 14 35 35 H 1.09001 * 109.47340 * 300.00367 * 16 15 14 36 36 H 0.97000 * 119.99667 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5735 0.9902 0.0005 5 16 3.9385 -0.7303 0.0080 6 6 2.2244 -1.1244 0.0005 7 6 1.6537 -2.5191 0.0017 8 1 0.6555 -2.6183 0.4280 9 6 2.6283 -3.6819 0.2053 10 6 2.0138 -3.4308 -1.1732 11 1 1.2525 -4.1296 -1.5197 12 6 2.9121 -2.8652 -2.2429 13 8 3.3180 -1.7307 -2.1533 14 8 3.2614 -3.6218 -3.2952 15 6 4.1285 -3.0115 -4.2870 16 6 4.4148 -4.0185 -5.4028 17 6 5.3153 -3.3853 -6.4320 18 1 5.6496 -2.3664 -6.3034 19 6 5.7116 -4.1063 -7.5384 20 7 6.4971 -3.5535 -8.4368 21 14 5.1329 -5.8684 -7.7612 22 1 3.8568 -5.8779 -8.5207 23 1 6.1602 -6.6359 -8.5101 24 1 4.9215 -6.4921 -6.4303 25 1 -0.3634 0.0003 1.0276 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.7963 2.1464 0.0004 29 1 4.3076 1.7824 0.0010 30 1 2.2710 -4.5457 0.7659 31 1 3.6823 -3.4380 0.3389 32 1 5.0656 -2.7138 -3.8165 33 1 3.6381 -2.1336 -4.7076 34 1 3.4776 -4.3158 -5.8733 35 1 4.9051 -4.8967 -4.9827 36 1 6.7761 -4.0610 -9.2150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178990029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:11 Heat of formation + Delta-G solvation = -28.011315 kcal Electronic energy + Delta-G solvation = -19160.548823 eV Core-core repulsion = 16123.605455 eV Total energy + Delta-G solvation = -3036.943368 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37031 -38.50757 -36.98221 -35.65246 -33.29314 -30.90690 -30.69648 -27.78493 -25.96876 -24.06508 -23.42289 -21.71381 -20.66763 -20.20725 -18.89999 -17.48347 -16.98932 -16.49517 -16.02017 -15.60056 -15.08382 -14.77099 -14.20761 -13.96981 -13.49544 -13.40772 -13.05876 -12.78599 -12.41377 -12.38684 -12.10880 -11.96854 -11.65198 -11.51640 -11.27980 -11.00343 -10.75123 -10.62460 -10.49198 -10.37128 -9.95266 -9.88589 -9.67569 -9.34241 -8.62073 -8.25903 -7.76310 -6.12693 -4.13722 1.07642 1.86321 2.19160 2.45015 2.77504 3.07073 3.27935 3.35188 3.39845 3.68724 4.29761 4.38824 4.53659 4.62987 4.98503 5.01147 5.17859 5.20962 5.37538 5.39046 5.50705 5.52597 5.55790 5.68156 5.71566 5.89615 5.99836 6.00878 6.19440 6.47412 6.52234 6.65018 6.84196 7.21707 7.24231 7.63146 8.21842 8.40268 8.89102 9.47024 10.99943 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.027208 B = 0.003903 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.864111 B = 7171.508513 C = 7613.228099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.111 4.111 3 C -0.137 4.137 4 C -0.227 4.227 5 S 0.168 5.832 6 C -0.147 4.147 7 C -0.050 4.050 8 H 0.133 0.867 9 C -0.146 4.146 10 C -0.154 4.154 11 H 0.140 0.860 12 C 0.471 3.529 13 O -0.488 6.488 14 O -0.359 6.359 15 C 0.085 3.915 16 C -0.009 4.009 17 C -0.527 4.527 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.881 3.119 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.132 0.868 29 H 0.158 0.842 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.023 0.977 35 H 0.027 0.973 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.501 3.171 21.269 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.169 4.169 4 C -0.363 4.363 5 S 0.437 5.563 6 C -0.265 4.265 7 C -0.070 4.070 8 H 0.151 0.849 9 C -0.183 4.183 10 C -0.173 4.173 11 H 0.157 0.843 12 C 0.313 3.687 13 O -0.377 6.377 14 O -0.276 6.276 15 C 0.013 3.987 16 C -0.047 4.047 17 C -0.565 4.565 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.708 3.292 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.188 1.188 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.149 0.851 29 H 0.175 0.825 30 H 0.136 0.864 31 H 0.120 0.880 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.838 2.653 21.090 23.423 hybrid contribution -1.373 0.144 -0.604 1.507 sum -11.212 2.797 20.486 23.520 Atomic orbital electron populations 1.20455 0.90393 1.02506 1.01585 1.18587 0.96915 0.91552 1.05248 1.19829 0.92846 0.98739 1.05445 1.25588 0.99799 0.99860 1.11056 1.83871 1.04787 0.99303 1.68332 1.23299 0.96653 0.96066 1.10440 1.20535 1.00016 0.86741 0.99729 0.84933 1.23234 0.99547 0.99951 0.95582 1.21942 1.02460 1.04688 0.88257 0.84250 1.22508 0.79170 0.84715 0.82326 1.90872 1.52441 1.18736 1.75657 1.86447 1.62802 1.46388 1.31954 1.23344 0.91221 0.97518 0.86661 1.19621 0.97430 0.95215 0.92400 1.20847 1.29520 1.01437 1.04671 0.90687 1.24935 0.94395 0.98347 0.95321 1.69898 1.34807 1.37468 1.11378 0.86751 0.78702 0.84925 0.78831 1.20058 1.21163 1.18764 0.91749 0.91813 0.91822 0.85065 0.82470 0.86383 0.87984 0.91772 0.91822 0.95885 0.95441 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 9.72 36.00 0.35 -0.50 16 2 C -0.11 -1.38 5.80 -106.25 -0.62 -1.99 16 3 C -0.14 -1.70 9.98 -41.21 -0.41 -2.11 16 4 C -0.23 -2.91 11.23 29.03 0.33 -2.59 16 5 S 0.17 2.32 18.96 -107.50 -2.04 0.28 16 6 C -0.15 -1.91 4.59 -36.01 -0.17 -2.07 16 7 C -0.05 -0.53 5.47 -91.73 -0.50 -1.03 16 8 H 0.13 1.03 7.53 -51.93 -0.39 0.63 16 9 C -0.15 -1.40 9.75 -26.69 -0.26 -1.66 16 10 C -0.15 -1.84 6.30 -91.77 -0.58 -2.41 16 11 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 12 C 0.47 7.94 7.71 36.00 0.28 8.22 16 13 O -0.49 -9.09 11.13 -18.76 -0.21 -9.29 16 14 O -0.36 -6.94 10.22 -39.26 -0.40 -7.34 16 15 C 0.09 1.85 5.40 37.16 0.20 2.05 16 16 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 17 C -0.53 -15.14 9.66 -34.44 -0.33 -15.47 16 18 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 21 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 27 H 0.06 0.57 7.24 -51.93 -0.38 0.20 16 28 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.10 7.27 -51.93 -0.38 0.72 16 32 H 0.06 1.40 8.13 -51.92 -0.42 0.98 16 33 H 0.06 1.41 8.13 -51.93 -0.42 0.98 16 34 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 35 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 316.05 15.07 4.76 4.76 Total: -1.00 -32.52 316.05 -8.59 -41.11 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.88 Total: -1.72 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -1.93 Total: -17.91 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.77 Total: -26.78 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.61 Total: -16.64 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.04 Total: 0.28 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.52 -8.59 -41.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178990029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.096 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds