Wall clock time and date at job start Tue Mar 31 2020 01:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38431 * 122.53757 * 2 1 4 4 C 1.33381 * 114.92071 * 179.97438 * 3 2 1 5 5 S 1.75889 * 109.59451 * 359.76054 * 4 3 2 6 6 C 1.33383 * 122.54138 * 179.97438 * 2 1 3 7 7 C 1.50694 * 125.20441 * 359.97438 * 6 2 1 8 8 H 1.08995 * 115.55287 * 334.33399 * 7 6 2 9 9 C 1.53078 * 117.51625 * 188.60825 * 7 6 2 10 10 C 1.52999 * 59.98759 * 252.52546 * 9 7 6 11 11 H 1.08998 * 117.49989 * 252.50349 * 10 9 7 12 12 C 1.50698 * 117.50087 * 107.49767 * 10 9 7 13 13 O 1.20833 * 120.00261 * 291.25930 * 12 10 9 14 14 O 1.34231 * 120.00102 * 111.25235 * 12 10 9 15 15 C 1.45194 * 116.99946 * 179.97438 * 14 12 10 16 16 C 1.53003 * 109.46822 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47202 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99685 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00216 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00069 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99806 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 90.00621 * 21 19 17 23 23 H 1.48503 * 109.47399 * 210.00111 * 21 19 17 24 24 H 1.48498 * 109.47295 * 330.00717 * 21 19 17 25 25 H 1.08999 * 109.47285 * 270.01584 * 1 2 3 26 26 H 1.08999 * 109.47505 * 30.02421 * 1 2 3 27 27 H 1.09006 * 109.47132 * 150.02273 * 1 2 3 28 28 H 1.08003 * 122.53544 * 0.02562 * 3 2 1 29 29 H 1.07998 * 125.20344 * 180.02562 * 4 3 2 30 30 H 1.09000 * 117.49727 * 145.03627 * 9 7 6 31 31 H 1.09003 * 117.51159 * 0.02562 * 9 7 6 32 32 H 1.09008 * 109.47164 * 60.00773 * 15 14 12 33 33 H 1.08996 * 109.47763 * 299.99791 * 15 14 12 34 34 H 1.08999 * 109.47344 * 60.00396 * 16 15 14 35 35 H 1.09001 * 109.47340 * 300.00367 * 16 15 14 36 36 H 0.97000 * 119.99667 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5735 0.9902 0.0005 5 16 3.9385 -0.7303 0.0080 6 6 2.2244 -1.1244 0.0005 7 6 1.6537 -2.5191 0.0017 8 1 0.6555 -2.6183 0.4280 9 6 2.6283 -3.6819 0.2053 10 6 2.0138 -3.4308 -1.1732 11 1 1.2525 -4.1296 -1.5197 12 6 2.9121 -2.8652 -2.2429 13 8 3.3180 -1.7307 -2.1533 14 8 3.2614 -3.6218 -3.2952 15 6 4.1285 -3.0115 -4.2870 16 6 4.4148 -4.0185 -5.4028 17 6 5.3153 -3.3853 -6.4320 18 1 5.6496 -2.3664 -6.3034 19 6 5.7116 -4.1063 -7.5384 20 7 6.4971 -3.5535 -8.4368 21 14 5.1329 -5.8684 -7.7612 22 1 3.8568 -5.8779 -8.5207 23 1 6.1602 -6.6359 -8.5101 24 1 4.9215 -6.4921 -6.4303 25 1 -0.3634 0.0003 1.0276 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.7963 2.1464 0.0004 29 1 4.3076 1.7824 0.0010 30 1 2.2710 -4.5457 0.7659 31 1 3.6823 -3.4380 0.3389 32 1 5.0656 -2.7138 -3.8165 33 1 3.6381 -2.1336 -4.7076 34 1 3.4776 -4.3158 -5.8733 35 1 4.9051 -4.8967 -4.9827 36 1 6.7761 -4.0610 -9.2150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178990029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:11 Heat of formation + Delta-G solvation = -45.993216 kcal Electronic energy + Delta-G solvation = -19161.328577 eV Core-core repulsion = 16123.605455 eV Total energy + Delta-G solvation = -3037.723121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.63764 -39.54150 -38.10348 -36.92389 -35.40038 -32.81038 -31.69669 -28.68783 -27.61685 -25.51243 -24.28172 -22.71620 -22.48307 -21.42871 -19.91358 -19.17049 -18.31833 -17.92359 -17.48855 -16.77986 -16.39426 -16.01995 -15.72460 -15.06392 -14.95061 -14.75827 -14.42632 -13.92708 -13.79054 -13.31444 -13.19542 -13.16155 -12.98201 -12.83285 -12.51347 -12.41334 -12.37272 -11.83683 -11.79711 -11.57217 -11.53949 -11.46705 -11.34099 -11.23374 -10.82923 -9.20820 -8.82284 -8.36231 -6.44729 0.10407 0.89525 1.14159 1.31367 1.36823 1.38696 1.51630 1.69996 1.88035 2.33124 2.82665 2.98554 3.43060 3.67520 3.72820 3.95332 4.14051 4.15711 4.20015 4.30001 4.57942 4.60973 4.63049 4.68315 4.78505 4.83793 4.91334 4.98954 5.06011 5.18744 5.25455 5.26770 5.48922 5.60874 5.63312 5.76361 6.13638 6.61068 6.83262 7.20564 8.80054 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.027208 B = 0.003903 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.864111 B = 7171.508513 C = 7613.228099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.122 4.122 3 C -0.144 4.144 4 C -0.239 4.239 5 S 0.110 5.890 6 C -0.155 4.155 7 C -0.046 4.046 8 H 0.170 0.830 9 C -0.130 4.130 10 C -0.164 4.164 11 H 0.169 0.831 12 C 0.459 3.541 13 O -0.510 6.510 14 O -0.363 6.363 15 C 0.099 3.901 16 C -0.002 4.002 17 C -0.544 4.544 18 H 0.032 0.968 19 C 0.012 3.988 20 N -0.945 5.945 21 Si 0.956 3.044 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.244 1.244 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.152 0.848 29 H 0.170 0.830 30 H 0.159 0.841 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.205 1.163 22.873 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.176 4.176 4 C -0.374 4.374 5 S 0.379 5.621 6 C -0.272 4.272 7 C -0.066 4.066 8 H 0.187 0.813 9 C -0.167 4.167 10 C -0.183 4.183 11 H 0.186 0.814 12 C 0.303 3.697 13 O -0.399 6.399 14 O -0.280 6.280 15 C 0.025 3.975 16 C -0.040 4.040 17 C -0.582 4.582 18 H 0.051 0.949 19 C -0.186 4.186 20 N -0.584 5.584 21 Si 0.777 3.223 22 H -0.187 1.187 23 H -0.205 1.205 24 H -0.168 1.168 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.169 0.831 29 H 0.188 0.812 30 H 0.176 0.824 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.555 0.664 22.724 25.970 hybrid contribution -0.505 0.949 -1.044 1.499 sum -13.059 1.613 21.680 25.361 Atomic orbital electron populations 1.20526 0.88004 1.03099 1.03090 1.19050 0.98718 0.91266 1.04376 1.20222 0.92787 0.99978 1.04566 1.25826 1.00626 0.99365 1.11629 1.84013 1.07372 1.01024 1.69647 1.23649 0.95294 0.97781 1.10517 1.20836 1.01771 0.85386 0.98595 0.81278 1.23428 0.98750 1.00892 0.93646 1.22100 1.02655 1.06239 0.87346 0.81353 1.23638 0.79220 0.84579 0.82273 1.90891 1.53346 1.19839 1.75857 1.86434 1.62465 1.46662 1.32412 1.22826 0.91327 0.96381 0.86922 1.19448 0.96820 0.95512 0.92179 1.21114 1.30540 1.00104 1.06407 0.94919 1.25968 0.94248 1.03727 0.94654 1.70046 1.36306 1.39804 1.12254 0.85585 0.78600 0.78299 0.79770 1.18694 1.20457 1.16769 0.89671 0.91386 0.91107 0.83075 0.81222 0.82361 0.89707 0.92900 0.93008 0.94835 0.94723 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 9.72 71.23 0.69 -0.71 16 2 C -0.12 -2.83 5.80 -20.92 -0.12 -2.95 16 3 C -0.14 -3.46 9.98 21.22 0.21 -3.25 16 4 C -0.24 -6.20 11.23 66.72 0.75 -5.45 16 5 S 0.11 3.12 18.96 -56.49 -1.07 2.05 16 6 C -0.15 -3.81 4.59 24.58 0.11 -3.69 16 7 C -0.05 -0.82 5.47 -11.51 -0.06 -0.89 16 8 H 0.17 1.77 7.53 -2.39 -0.02 1.75 16 9 C -0.13 -2.09 9.75 30.62 0.30 -1.80 16 10 C -0.16 -3.44 6.30 -11.54 -0.07 -3.52 16 11 H 0.17 2.54 8.14 -2.39 -0.02 2.52 16 12 C 0.46 15.14 7.71 71.24 0.55 15.69 16 13 O -0.51 -19.23 11.13 21.94 0.24 -18.98 16 14 O -0.36 -13.76 10.22 -51.43 -0.53 -14.28 16 15 C 0.10 4.39 5.40 71.98 0.39 4.78 16 16 C 0.00 -0.11 4.42 29.85 0.13 0.03 16 17 C -0.54 -32.13 9.66 25.60 0.25 -31.89 16 18 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 19 C 0.01 0.71 5.47 84.65 0.46 1.17 16 20 N -0.94 -59.36 13.96 21.45 0.30 -59.06 16 21 Si 0.96 43.81 27.47 68.60 1.88 45.70 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 27 H 0.07 1.03 7.24 -2.38 -0.02 1.01 16 28 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 30 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.71 7.27 -2.39 -0.02 1.69 16 32 H 0.05 2.42 8.13 -2.38 -0.02 2.40 16 33 H 0.05 2.38 8.13 -2.39 -0.02 2.36 16 34 H 0.03 1.56 7.57 -2.39 -0.02 1.55 16 35 H 0.03 1.64 7.20 -2.39 -0.02 1.62 16 36 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -72.93 316.05 5.44 -67.49 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.02 Total: 9.54 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 3.59 Total: -32.45 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.30 Total: -59.06 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.28 Total: -33.27 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.07 Total: 2.05 kcal Total: -72.93 5.44 -67.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178990029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.497 kcal (2) G-P(sol) polarization free energy of solvation -72.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds