Wall clock time and date at job start Tue Mar 31 2020 01:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38422 * 122.54501 * 2 1 4 4 C 1.33383 * 114.92271 * 180.27018 * 3 2 1 5 5 S 1.75882 * 109.59409 * 359.77099 * 4 3 2 6 6 C 1.33389 * 122.53683 * 179.82611 * 2 1 3 7 7 C 1.50707 * 125.20460 * 0.02562 * 6 2 1 8 8 H 1.08992 * 115.56110 * 25.40201 * 7 6 2 9 9 C 1.52999 * 117.49811 * 171.09416 * 7 6 2 10 10 C 1.52998 * 60.00119 * 107.48631 * 9 7 6 11 11 H 1.09002 * 117.50248 * 107.51059 * 10 9 7 12 12 C 1.50706 * 117.50140 * 252.51076 * 10 9 7 13 13 O 1.20824 * 120.00104 * 68.60362 * 12 10 9 14 14 O 1.34230 * 119.99717 * 248.60918 * 12 10 9 15 15 C 1.45199 * 116.99614 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47075 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46838 * 89.99826 * 21 19 17 23 23 H 1.48497 * 109.47419 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47011 * 330.00539 * 21 19 17 25 25 H 1.08998 * 109.47437 * 270.16721 * 1 2 3 26 26 H 1.08998 * 109.46690 * 30.17280 * 1 2 3 27 27 H 1.09005 * 109.47066 * 150.16878 * 1 2 3 28 28 H 1.08005 * 122.53399 * 0.04513 * 3 2 1 29 29 H 1.08003 * 125.19995 * 179.79159 * 4 3 2 30 30 H 1.08997 * 117.50283 * 359.97438 * 9 7 6 31 31 H 1.08999 * 117.51950 * 214.96748 * 9 7 6 32 32 H 1.09002 * 109.47177 * 299.99820 * 15 14 12 33 33 H 1.09001 * 109.47399 * 59.99991 * 15 14 12 34 34 H 1.09002 * 109.47153 * 300.00058 * 16 15 14 35 35 H 1.08998 * 109.47533 * 59.99688 * 16 15 14 36 36 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2517 1.1669 0.0000 4 6 3.5737 0.9899 -0.0057 5 16 3.9386 -0.7306 -0.0049 6 6 2.2244 -1.1245 0.0034 7 6 1.6536 -2.5193 0.0071 8 1 0.6536 -2.6193 -0.4148 9 6 2.6269 -3.6815 -0.1994 10 6 2.0190 -3.4290 1.1817 11 1 1.2596 -4.1277 1.5328 12 6 2.9222 -2.8617 2.2465 13 8 3.3292 -1.7280 2.1523 14 8 3.2745 -3.6161 3.2994 15 6 4.1472 -3.0046 4.2857 16 6 4.4365 -4.0089 5.4031 17 6 5.3427 -3.3746 6.4265 18 1 5.6785 -2.3567 6.2935 19 6 5.7424 -4.0932 7.5332 20 7 5.3332 -5.3325 7.6955 21 14 6.8664 -3.3072 8.8014 22 1 6.0460 -2.6362 9.8417 23 1 7.7079 -4.3545 9.4339 24 1 7.7385 -2.3057 8.1368 25 1 -0.3634 0.0030 1.0276 26 1 -0.3632 0.8884 -0.5165 27 1 -0.3633 -0.8915 -0.5112 28 1 1.7966 2.1463 0.0007 29 1 4.3078 1.7821 -0.0098 30 1 3.6801 -3.4374 -0.3383 31 1 2.2676 -4.5464 -0.7570 32 1 5.0828 -2.7102 3.8102 33 1 3.6604 -2.1245 4.7058 34 1 3.5007 -4.3030 5.8785 35 1 4.9231 -4.8893 4.9835 36 1 5.6141 -5.8380 8.4743 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178990068.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:18 Heat of formation + Delta-G solvation = -31.617032 kcal Electronic energy + Delta-G solvation = -19117.846471 eV Core-core repulsion = 16080.746748 eV Total energy + Delta-G solvation = -3037.099723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.29328 -38.45945 -36.91824 -35.56630 -33.32554 -30.84056 -30.27605 -27.72895 -25.74428 -24.07663 -23.39781 -21.69127 -20.91103 -20.11786 -18.86280 -17.36548 -16.84905 -16.19709 -15.88514 -15.55103 -15.06887 -14.74169 -14.46867 -13.89808 -13.36620 -13.27011 -12.98546 -12.54285 -12.37068 -12.31222 -12.10569 -11.90807 -11.59204 -11.26063 -11.03093 -10.95816 -10.78498 -10.64775 -10.59161 -10.38928 -10.09132 -9.61573 -9.60179 -9.28985 -8.43621 -8.23141 -7.72470 -6.09735 -4.13962 1.10582 1.88855 2.22077 2.51518 2.81122 3.15488 3.28811 3.34920 3.39526 3.74287 4.34924 4.39695 4.59166 4.69464 5.01088 5.05356 5.26821 5.27279 5.37299 5.41976 5.51556 5.54856 5.63381 5.74350 5.76826 5.92579 6.12601 6.14567 6.21463 6.54471 6.66600 6.67294 7.06632 7.57868 7.63930 7.88239 8.22404 8.33553 8.91630 9.50348 11.01815 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025748 B = 0.003785 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.184261 B = 7395.659219 C = 7898.300015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.112 4.112 3 C -0.137 4.137 4 C -0.229 4.229 5 S 0.170 5.830 6 C -0.145 4.145 7 C -0.052 4.052 8 H 0.133 0.867 9 C -0.146 4.146 10 C -0.153 4.153 11 H 0.140 0.860 12 C 0.470 3.530 13 O -0.492 6.492 14 O -0.355 6.355 15 C 0.078 3.922 16 C 0.024 3.976 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.131 0.869 29 H 0.157 0.843 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.027 0.973 35 H 0.028 0.972 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.664 7.207 -19.178 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.168 4.168 4 C -0.365 4.365 5 S 0.439 5.561 6 C -0.263 4.263 7 C -0.071 4.071 8 H 0.151 0.849 9 C -0.184 4.184 10 C -0.172 4.172 11 H 0.158 0.842 12 C 0.312 3.688 13 O -0.382 6.382 14 O -0.271 6.271 15 C 0.006 3.994 16 C -0.013 4.013 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.175 0.825 30 H 0.120 0.880 31 H 0.136 0.864 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.084 6.558 -19.052 21.358 hybrid contribution -0.579 1.336 1.069 1.807 sum -7.663 7.894 -17.983 21.082 Atomic orbital electron populations 1.20454 0.90397 1.01985 1.02005 1.18584 0.96912 0.91562 1.05372 1.19816 0.92840 0.98705 1.05487 1.25588 0.99783 0.99937 1.11239 1.83868 1.04824 0.99171 1.68188 1.23304 0.96648 0.96110 1.10262 1.20524 0.99980 0.86737 0.99903 0.84944 1.23217 0.99557 0.99947 0.95654 1.21945 1.02420 1.04566 0.88305 0.84222 1.22531 0.79157 0.84703 0.82367 1.90852 1.52820 1.18862 1.75646 1.86490 1.62392 1.46308 1.31940 1.23599 0.90519 0.98085 0.87245 1.19163 0.97681 0.94044 0.90374 1.20981 1.29843 0.99595 1.05967 0.92305 1.24980 0.96315 0.94831 0.98006 1.69979 1.44795 1.09146 1.28950 0.86479 0.80558 0.78981 0.81340 1.20479 1.21036 1.19728 0.91550 0.91996 0.91925 0.85119 0.82536 0.88041 0.86393 0.92413 0.92443 0.95426 0.95403 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.87 36.01 0.36 -0.51 16 2 C -0.11 -1.42 5.80 -106.25 -0.62 -2.04 16 3 C -0.14 -1.72 9.98 -41.21 -0.41 -2.13 16 4 C -0.23 -2.97 11.23 29.04 0.33 -2.64 16 5 S 0.17 2.39 18.92 -107.50 -2.03 0.36 16 6 C -0.15 -1.94 4.60 -36.00 -0.17 -2.10 16 7 C -0.05 -0.57 5.75 -91.77 -0.53 -1.09 16 8 H 0.13 1.08 6.93 -51.93 -0.36 0.72 16 9 C -0.15 -1.49 9.75 -26.73 -0.26 -1.75 16 10 C -0.15 -1.93 6.30 -91.77 -0.58 -2.51 16 11 H 0.14 1.47 8.14 -51.93 -0.42 1.05 16 12 C 0.47 8.28 7.71 36.01 0.28 8.56 16 13 O -0.49 -9.40 11.10 -18.75 -0.21 -9.61 16 14 O -0.35 -7.28 10.22 -39.26 -0.40 -7.68 16 15 C 0.08 1.77 5.40 37.16 0.20 1.97 16 16 C 0.02 0.65 5.35 -27.89 -0.15 0.50 16 17 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 21 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 27 H 0.06 0.51 6.75 -51.93 -0.35 0.16 16 28 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 29 H 0.16 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.10 1.15 7.27 -51.93 -0.38 0.77 16 31 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 33 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 318.92 15.07 4.81 4.81 Total: -1.00 -32.05 318.92 -8.94 -40.99 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.86 Total: -2.19 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.96 Total: -17.40 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.61 Total: -17.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.03 Total: 0.36 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.05 -8.94 -40.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178990068.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.376 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds