Wall clock time and date at job start Tue Mar 31 2020 01:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38422 * 122.54501 * 2 1 4 4 C 1.33383 * 114.92271 * 180.27018 * 3 2 1 5 5 S 1.75882 * 109.59409 * 359.77099 * 4 3 2 6 6 C 1.33389 * 122.53683 * 179.82611 * 2 1 3 7 7 C 1.50707 * 125.20460 * 0.02562 * 6 2 1 8 8 H 1.08992 * 115.56110 * 25.40201 * 7 6 2 9 9 C 1.52999 * 117.49811 * 171.09416 * 7 6 2 10 10 C 1.52998 * 60.00119 * 107.48631 * 9 7 6 11 11 H 1.09002 * 117.50248 * 107.51059 * 10 9 7 12 12 C 1.50706 * 117.50140 * 252.51076 * 10 9 7 13 13 O 1.20824 * 120.00104 * 68.60362 * 12 10 9 14 14 O 1.34230 * 119.99717 * 248.60918 * 12 10 9 15 15 C 1.45199 * 116.99614 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47075 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46838 * 89.99826 * 21 19 17 23 23 H 1.48497 * 109.47419 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47011 * 330.00539 * 21 19 17 25 25 H 1.08998 * 109.47437 * 270.16721 * 1 2 3 26 26 H 1.08998 * 109.46690 * 30.17280 * 1 2 3 27 27 H 1.09005 * 109.47066 * 150.16878 * 1 2 3 28 28 H 1.08005 * 122.53399 * 0.04513 * 3 2 1 29 29 H 1.08003 * 125.19995 * 179.79159 * 4 3 2 30 30 H 1.08997 * 117.50283 * 359.97438 * 9 7 6 31 31 H 1.08999 * 117.51950 * 214.96748 * 9 7 6 32 32 H 1.09002 * 109.47177 * 299.99820 * 15 14 12 33 33 H 1.09001 * 109.47399 * 59.99991 * 15 14 12 34 34 H 1.09002 * 109.47153 * 300.00058 * 16 15 14 35 35 H 1.08998 * 109.47533 * 59.99688 * 16 15 14 36 36 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2517 1.1669 0.0000 4 6 3.5737 0.9899 -0.0057 5 16 3.9386 -0.7306 -0.0049 6 6 2.2244 -1.1245 0.0034 7 6 1.6536 -2.5193 0.0071 8 1 0.6536 -2.6193 -0.4148 9 6 2.6269 -3.6815 -0.1994 10 6 2.0190 -3.4290 1.1817 11 1 1.2596 -4.1277 1.5328 12 6 2.9222 -2.8617 2.2465 13 8 3.3292 -1.7280 2.1523 14 8 3.2745 -3.6161 3.2994 15 6 4.1472 -3.0046 4.2857 16 6 4.4365 -4.0089 5.4031 17 6 5.3427 -3.3746 6.4265 18 1 5.6785 -2.3567 6.2935 19 6 5.7424 -4.0932 7.5332 20 7 5.3332 -5.3325 7.6955 21 14 6.8664 -3.3072 8.8014 22 1 6.0460 -2.6362 9.8417 23 1 7.7079 -4.3545 9.4339 24 1 7.7385 -2.3057 8.1368 25 1 -0.3634 0.0030 1.0276 26 1 -0.3632 0.8884 -0.5165 27 1 -0.3633 -0.8915 -0.5112 28 1 1.7966 2.1463 0.0007 29 1 4.3078 1.7821 -0.0098 30 1 3.6801 -3.4374 -0.3383 31 1 2.2676 -4.5464 -0.7570 32 1 5.0828 -2.7102 3.8102 33 1 3.6604 -2.1245 4.7058 34 1 3.5007 -4.3030 5.8785 35 1 4.9231 -4.8893 4.9835 36 1 5.6141 -5.8380 8.4743 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178990068.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:18 Heat of formation + Delta-G solvation = -48.425741 kcal Electronic energy + Delta-G solvation = -19118.575351 eV Core-core repulsion = 16080.746748 eV Total energy + Delta-G solvation = -3037.828603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.62540 -39.53580 -38.08943 -36.90888 -35.45648 -32.37679 -31.68490 -28.64805 -27.45930 -25.62032 -24.28413 -22.96172 -22.51677 -21.41435 -19.90449 -18.86443 -18.16921 -17.90493 -17.45400 -16.82050 -16.54055 -16.03396 -15.72502 -14.99519 -14.77567 -14.58405 -14.38378 -13.90161 -13.78233 -13.19539 -13.17503 -13.07836 -12.98816 -12.79979 -12.62688 -12.54898 -12.37137 -11.91340 -11.72255 -11.54026 -11.51944 -11.48385 -11.31774 -11.19897 -10.63171 -9.20808 -8.80759 -8.28864 -6.42399 0.11133 0.90328 1.14616 1.32427 1.39187 1.41255 1.52325 1.73306 1.89905 2.38676 2.82313 3.05281 3.44066 3.68542 3.72834 3.97129 4.15164 4.20703 4.25745 4.30344 4.59150 4.62816 4.65620 4.68329 4.76849 4.84661 4.90076 4.99661 5.20065 5.26157 5.26656 5.44240 5.59027 5.62091 5.75306 5.76838 6.04705 6.70283 6.85149 7.27471 8.83830 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025748 B = 0.003785 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.184261 B = 7395.659219 C = 7898.300015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.121 4.121 3 C -0.144 4.144 4 C -0.237 4.237 5 S 0.113 5.887 6 C -0.157 4.157 7 C -0.044 4.044 8 H 0.170 0.830 9 C -0.131 4.131 10 C -0.168 4.168 11 H 0.165 0.835 12 C 0.460 3.540 13 O -0.509 6.509 14 O -0.368 6.368 15 C 0.097 3.903 16 C 0.032 3.968 17 C -0.551 4.551 18 H 0.063 0.937 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.973 3.027 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.264 1.264 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.153 0.847 29 H 0.172 0.828 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.005 0.995 35 H 0.005 0.995 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.764 7.830 -20.036 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.176 4.176 4 C -0.373 4.373 5 S 0.382 5.618 6 C -0.274 4.274 7 C -0.063 4.063 8 H 0.187 0.813 9 C -0.168 4.168 10 C -0.187 4.187 11 H 0.182 0.818 12 C 0.303 3.697 13 O -0.399 6.399 14 O -0.285 6.285 15 C 0.023 3.977 16 C -0.006 4.006 17 C -0.589 4.589 18 H 0.081 0.919 19 C -0.192 4.192 20 N -0.565 5.565 21 Si 0.797 3.203 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.188 1.188 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.170 0.830 29 H 0.190 0.810 30 H 0.104 0.896 31 H 0.175 0.825 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.023 0.977 35 H 0.024 0.976 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.196 7.193 -19.938 22.725 hybrid contribution -0.280 1.191 1.253 1.751 sum -8.476 8.384 -18.685 22.164 Atomic orbital electron populations 1.20529 0.88078 1.03834 1.02250 1.19050 0.98679 0.91303 1.04338 1.20215 0.92805 0.99917 1.04633 1.25838 1.00604 0.99342 1.11521 1.84019 1.07224 1.01047 1.69515 1.23637 0.95464 0.97695 1.10614 1.20816 1.01711 0.85489 0.98315 0.81273 1.23413 0.98880 1.00994 0.93523 1.22090 1.02656 1.06355 0.87587 0.81798 1.23610 0.79270 0.84593 0.82189 1.90865 1.53574 1.19674 1.75741 1.86482 1.62285 1.46999 1.32717 1.23037 0.91044 0.96527 0.87064 1.18966 0.96121 0.94104 0.91360 1.21359 1.30571 1.00037 1.06943 0.91920 1.25961 0.97755 0.95290 1.00175 1.70097 1.45926 1.10617 1.29880 0.85325 0.78424 0.78221 0.78346 1.19472 1.20187 1.18836 0.91921 0.90413 0.89971 0.82989 0.81047 0.89636 0.82483 0.92625 0.92749 0.97656 0.97620 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 9.87 71.24 0.70 -0.74 16 2 C -0.12 -2.86 5.80 -20.92 -0.12 -2.98 16 3 C -0.14 -3.44 9.98 21.21 0.21 -3.23 16 4 C -0.24 -6.07 11.23 66.72 0.75 -5.32 16 5 S 0.11 3.21 18.92 -56.49 -1.07 2.14 16 6 C -0.16 -3.95 4.60 24.59 0.11 -3.84 16 7 C -0.04 -0.84 5.75 -11.54 -0.07 -0.91 16 8 H 0.17 1.97 6.93 -2.39 -0.02 1.96 16 9 C -0.13 -2.35 9.75 30.59 0.30 -2.05 16 10 C -0.17 -3.91 6.30 -11.54 -0.07 -3.98 16 11 H 0.16 2.99 8.14 -2.39 -0.02 2.97 16 12 C 0.46 16.18 7.71 71.24 0.55 16.73 16 13 O -0.51 -19.66 11.10 21.97 0.24 -19.41 16 14 O -0.37 -15.38 10.22 -51.42 -0.53 -15.90 16 15 C 0.10 4.53 5.40 71.98 0.39 4.92 16 16 C 0.03 1.75 5.35 29.85 0.16 1.91 16 17 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 18 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 19 C 0.01 0.42 5.46 84.65 0.46 0.88 16 20 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 21 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.08 1.02 8.13 -2.39 -0.02 1.00 16 27 H 0.08 1.01 6.75 -2.38 -0.02 0.99 16 28 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 29 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.09 1.86 7.27 -2.39 -0.02 1.84 16 31 H 0.16 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 2.59 8.13 -2.39 -0.02 2.57 16 33 H 0.05 2.55 8.13 -2.39 -0.02 2.53 16 34 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -70.81 318.92 5.64 -65.16 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.08 Total: 7.98 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 3.61 Total: -30.39 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.28 Total: -55.81 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.28 Total: -35.32 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.07 Total: 2.14 kcal Total: -70.81 5.64 -65.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178990068.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.738 kcal (2) G-P(sol) polarization free energy of solvation -70.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds