Wall clock time and date at job start Tue Mar 31 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 119.99982 * 2 1 4 4 C 1.50692 * 109.47498 * 269.99679 * 3 2 1 5 5 H 1.08003 * 119.99770 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00249 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99798 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99934 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47281 * 60.00325 * 8 6 4 10 10 H 1.48498 * 109.46958 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47383 * 299.99971 * 8 6 4 12 12 C 1.34771 * 119.99907 * 180.02562 * 2 1 3 13 13 O 1.21591 * 120.00211 * 185.02806 * 12 2 1 14 14 C 1.47539 * 120.00037 * 5.02801 * 12 2 1 15 15 C 1.39706 * 120.19057 * 306.86414 * 14 12 2 16 16 C 1.37788 * 119.90494 * 179.97438 * 15 14 12 17 17 N 1.48022 * 119.84692 * 179.97438 * 16 15 14 18 18 O 1.21799 * 120.00226 * 0.02562 * 17 16 15 19 19 O 1.21804 * 120.00018 * 179.97438 * 17 16 15 20 20 C 1.38551 * 120.30375 * 359.97368 * 16 15 14 21 21 C 1.38058 * 120.38781 * 359.78798 * 20 16 15 22 22 C 1.38708 * 120.08373 * 0.46823 * 21 20 16 23 23 O 1.35652 * 120.14813 * 179.78559 * 22 21 20 24 24 H 1.09000 * 109.47074 * 305.45072 * 1 2 3 25 25 H 1.09005 * 109.46882 * 65.44659 * 1 2 3 26 26 H 1.09000 * 109.47502 * 185.44991 * 1 2 3 27 27 H 1.09000 * 109.47204 * 30.00163 * 3 2 1 28 28 H 1.09000 * 109.46925 * 149.99889 * 3 2 1 29 29 H 0.97001 * 119.99678 * 179.97438 * 7 6 4 30 30 H 1.07999 * 120.04681 * 359.94597 * 15 14 12 31 31 H 1.07992 * 119.80308 * 180.02562 * 20 16 15 32 32 H 1.07998 * 119.95709 * 180.23818 * 21 20 16 33 33 H 0.96698 * 114.00014 * 269.72187 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0975 1.0962 -2.2416 6 6 3.1261 2.8780 -1.6726 7 7 3.5533 3.6181 -0.6730 8 14 3.4369 3.4176 -3.4338 9 1 2.1391 3.5949 -4.1336 10 1 4.1795 4.7035 -3.4337 11 1 4.2397 2.3830 -4.1342 12 6 2.1388 -1.1672 -0.0005 13 8 3.3512 -1.1693 0.0918 14 6 1.4054 -2.4424 -0.1131 15 6 0.3566 -2.7294 0.7641 16 6 -0.3247 -3.9219 0.6534 17 7 -1.4353 -4.2250 1.5838 18 8 -1.7454 -3.4209 2.4446 19 8 -2.0398 -5.2781 1.4882 20 6 0.0249 -4.8386 -0.3249 21 6 1.0561 -4.5655 -1.2014 22 6 1.7563 -3.3724 -1.1010 23 8 2.7725 -3.1045 -1.9587 24 1 -0.3633 0.5960 0.8372 25 1 -0.3633 0.4271 -0.9348 26 1 -0.3634 -1.0230 0.0976 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 4.0301 4.4440 -0.8502 30 1 0.0806 -2.0179 1.5282 31 1 -0.5148 -5.7706 -0.4047 32 1 1.3202 -5.2834 -1.9637 33 1 3.6380 -3.4046 -1.6490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179452311.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:39 Heat of formation + Delta-G solvation = -39.918916 kcal Electronic energy + Delta-G solvation = -21629.759987 eV Core-core repulsion = 18046.007053 eV Total energy + Delta-G solvation = -3583.752934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.34201 -40.65867 -38.49852 -37.21025 -36.69690 -35.04989 -32.90926 -31.80359 -31.26887 -27.90883 -26.47760 -26.12245 -24.37219 -23.09525 -22.28886 -20.19814 -18.99140 -18.85647 -18.17209 -17.67476 -16.67600 -16.64242 -16.34537 -15.97027 -15.36520 -14.67174 -14.44139 -14.32581 -13.76580 -13.25294 -12.95234 -12.78230 -12.44682 -12.19550 -11.89459 -11.73799 -11.38733 -11.33056 -11.26784 -11.09904 -10.98020 -10.67765 -10.26153 -9.79128 -9.68630 -9.54505 -9.27129 -8.51362 -7.87576 -6.12942 -4.18382 -0.40141 0.41655 1.06910 1.20285 2.66395 3.12831 3.27330 3.31693 3.35578 3.57061 3.69484 4.08860 4.19415 4.37150 4.50852 4.64503 4.86082 5.16139 5.22506 5.23549 5.33062 5.38146 5.63594 5.78440 5.83161 6.08062 6.21253 6.85022 7.25172 7.27619 7.33489 7.49653 7.81959 8.10334 8.11714 8.63028 8.86764 9.46814 10.95312 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.004640 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.666795 B = 6032.982018 C = 6626.587198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.586 5.586 3 C 0.245 3.755 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.556 3.444 13 O -0.526 6.526 14 C -0.142 4.142 15 C -0.012 4.012 16 C -0.066 4.066 17 N 0.033 4.967 18 O -0.159 6.159 19 O -0.163 6.163 20 C -0.029 4.029 21 C -0.150 4.150 22 C 0.212 3.788 23 O -0.477 6.477 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.048 0.952 29 H 0.265 0.735 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.904 -16.172 0.532 17.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.317 5.317 3 C 0.127 3.873 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.340 3.660 13 O -0.404 6.404 14 C -0.147 4.147 15 C -0.032 4.032 16 C -0.149 4.149 17 N 0.552 4.448 18 O -0.375 6.375 19 O -0.379 6.379 20 C -0.049 4.049 21 C -0.170 4.170 22 C 0.165 3.835 23 O -0.291 6.291 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.182 0.818 31 H 0.177 0.823 32 H 0.176 0.824 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -6.041 -15.541 -0.157 16.674 hybrid contribution 0.146 0.163 -0.546 0.588 sum -5.895 -15.378 -0.702 16.484 Atomic orbital electron populations 1.22030 0.81209 1.01429 1.02934 1.48116 1.06423 1.07524 1.69600 1.19405 0.92647 0.77328 0.97954 1.21344 1.37066 1.06582 0.92011 0.92404 1.24921 0.95181 0.96231 0.97586 1.69917 1.38048 1.14346 1.30870 0.86529 0.78432 0.77867 0.84441 1.20196 1.21075 1.20114 1.17577 0.87086 0.82634 0.78682 1.90783 1.12903 1.86590 1.50127 1.20770 0.98228 0.98671 0.96988 1.21123 0.90527 0.93940 0.97592 1.20931 0.96029 0.99539 0.98389 1.43515 1.00851 1.00021 1.00380 1.94569 1.70557 1.44165 1.28183 1.94524 1.52628 1.13267 1.77435 1.20962 0.94726 0.98596 0.90571 1.21422 0.97322 0.97215 1.00993 1.18770 0.89395 0.89851 0.85516 1.84685 1.18471 1.83230 1.42695 0.91487 0.91713 0.91935 0.94440 0.93353 0.92512 0.81804 0.82319 0.82398 0.72660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 10.03 59.85 0.60 1.67 16 2 N -0.59 -12.10 2.86 -184.20 -0.53 -12.63 16 3 C 0.25 6.23 5.24 -5.20 -0.03 6.20 16 4 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 C 0.56 11.06 6.85 -12.47 -0.09 10.97 16 13 O -0.53 -12.31 16.27 0.88 0.01 -12.29 16 14 C -0.14 -2.10 5.06 -104.84 -0.53 -2.63 16 15 C -0.01 -0.16 6.84 -39.20 -0.27 -0.42 16 16 C -0.07 -0.76 6.84 -79.99 -0.55 -1.31 16 17 N 0.03 0.44 4.45 33.94 0.15 0.59 16 18 O -0.16 -2.24 18.43 -29.46 -0.54 -2.79 16 19 O -0.16 -2.15 18.43 -29.46 -0.54 -2.69 16 20 C -0.03 -0.27 9.54 -39.53 -0.38 -0.64 16 21 C -0.15 -1.34 9.98 -39.47 -0.39 -1.74 16 22 C 0.21 2.65 6.70 -38.69 -0.26 2.39 16 23 O -0.48 -6.29 12.67 -23.06 -0.29 -6.59 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.83 3.91 -51.93 -0.20 0.63 16 27 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 28 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.16 2.01 6.63 -52.49 -0.35 1.66 16 31 H 0.16 1.08 7.59 -52.49 -0.40 0.68 16 32 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.41 3.82 9.06 45.56 0.41 4.23 16 LS Contribution 302.28 15.07 4.56 4.56 Total: -1.00 -33.56 302.28 -5.93 -39.49 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -2.15 Total: 0.04 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -2.31 Total: 1.09 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.36 Total: -37.29 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -1.36 Total: -24.35 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.56 -5.93 -39.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179452311.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.429 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds