Wall clock time and date at job start Tue Mar 31 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 119.99982 * 2 1 4 4 C 1.50692 * 109.47498 * 269.99679 * 3 2 1 5 5 H 1.08003 * 119.99770 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00249 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99798 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99934 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47281 * 60.00325 * 8 6 4 10 10 H 1.48498 * 109.46958 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47383 * 299.99971 * 8 6 4 12 12 C 1.34771 * 119.99907 * 180.02562 * 2 1 3 13 13 O 1.21591 * 120.00211 * 185.02806 * 12 2 1 14 14 C 1.47539 * 120.00037 * 5.02801 * 12 2 1 15 15 C 1.39706 * 120.19057 * 306.86414 * 14 12 2 16 16 C 1.37788 * 119.90494 * 179.97438 * 15 14 12 17 17 N 1.48022 * 119.84692 * 179.97438 * 16 15 14 18 18 O 1.21799 * 120.00226 * 0.02562 * 17 16 15 19 19 O 1.21804 * 120.00018 * 179.97438 * 17 16 15 20 20 C 1.38551 * 120.30375 * 359.97368 * 16 15 14 21 21 C 1.38058 * 120.38781 * 359.78798 * 20 16 15 22 22 C 1.38708 * 120.08373 * 0.46823 * 21 20 16 23 23 O 1.35652 * 120.14813 * 179.78559 * 22 21 20 24 24 H 1.09000 * 109.47074 * 305.45072 * 1 2 3 25 25 H 1.09005 * 109.46882 * 65.44659 * 1 2 3 26 26 H 1.09000 * 109.47502 * 185.44991 * 1 2 3 27 27 H 1.09000 * 109.47204 * 30.00163 * 3 2 1 28 28 H 1.09000 * 109.46925 * 149.99889 * 3 2 1 29 29 H 0.97001 * 119.99678 * 179.97438 * 7 6 4 30 30 H 1.07999 * 120.04681 * 359.94597 * 15 14 12 31 31 H 1.07992 * 119.80308 * 180.02562 * 20 16 15 32 32 H 1.07998 * 119.95709 * 180.23818 * 21 20 16 33 33 H 0.96698 * 114.00014 * 269.72187 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0975 1.0962 -2.2416 6 6 3.1261 2.8780 -1.6726 7 7 3.5533 3.6181 -0.6730 8 14 3.4369 3.4176 -3.4338 9 1 2.1391 3.5949 -4.1336 10 1 4.1795 4.7035 -3.4337 11 1 4.2397 2.3830 -4.1342 12 6 2.1388 -1.1672 -0.0005 13 8 3.3512 -1.1693 0.0918 14 6 1.4054 -2.4424 -0.1131 15 6 0.3566 -2.7294 0.7641 16 6 -0.3247 -3.9219 0.6534 17 7 -1.4353 -4.2250 1.5838 18 8 -1.7454 -3.4209 2.4446 19 8 -2.0398 -5.2781 1.4882 20 6 0.0249 -4.8386 -0.3249 21 6 1.0561 -4.5655 -1.2014 22 6 1.7563 -3.3724 -1.1010 23 8 2.7725 -3.1045 -1.9587 24 1 -0.3633 0.5960 0.8372 25 1 -0.3633 0.4271 -0.9348 26 1 -0.3634 -1.0230 0.0976 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 4.0301 4.4440 -0.8502 30 1 0.0806 -2.0179 1.5282 31 1 -0.5148 -5.7706 -0.4047 32 1 1.3202 -5.2834 -1.9637 33 1 3.6380 -3.4046 -1.6490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179452311.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:39 Heat of formation + Delta-G solvation = -63.529376 kcal Electronic energy + Delta-G solvation = -21630.783813 eV Core-core repulsion = 18046.007053 eV Total energy + Delta-G solvation = -3584.776761 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.32975 -41.81135 -39.88942 -38.19247 -37.70476 -36.74072 -34.87051 -32.98656 -32.23597 -29.77018 -27.81800 -27.23198 -25.92401 -24.34324 -23.52188 -21.44921 -20.02082 -19.84277 -19.40357 -18.75661 -18.65543 -18.01118 -17.53435 -17.09532 -16.84384 -16.23681 -15.93644 -15.51972 -14.74284 -14.71608 -14.17297 -14.04036 -13.87909 -13.73443 -13.46782 -13.12001 -12.85636 -12.76733 -12.59120 -12.40680 -12.30103 -12.25253 -12.06984 -11.79575 -11.05012 -10.68443 -10.49417 -10.46354 -9.61752 -8.27010 -6.41985 -1.36363 -0.52968 0.10797 0.24149 1.35385 1.39181 1.45548 1.51019 1.86997 2.21486 2.37018 2.75437 3.02472 3.09552 3.25471 3.58151 3.62357 3.90855 4.10509 4.30647 4.36722 4.50863 4.52042 4.73112 4.77662 4.92639 4.98734 5.13910 5.25565 5.42044 5.70341 5.98106 6.44955 6.45618 6.47470 6.65356 7.07190 7.29829 8.80506 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.004640 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.666795 B = 6032.982018 C = 6626.587198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.597 5.597 3 C 0.259 3.741 4 C -0.547 4.547 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.926 5.926 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.275 1.275 12 C 0.551 3.449 13 O -0.574 6.574 14 C -0.165 4.165 15 C -0.010 4.010 16 C -0.070 4.070 17 N 0.035 4.965 18 O -0.199 6.199 19 O -0.143 6.143 20 C -0.005 4.005 21 C -0.124 4.124 22 C 0.209 3.791 23 O -0.496 6.496 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.029 0.971 28 H 0.007 0.993 29 H 0.269 0.731 30 H 0.161 0.839 31 H 0.195 0.805 32 H 0.201 0.799 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.221 -18.662 -1.305 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.327 5.327 3 C 0.138 3.862 4 C -0.586 4.586 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.201 1.201 12 C 0.339 3.661 13 O -0.455 6.455 14 C -0.170 4.170 15 C -0.030 4.030 16 C -0.153 4.153 17 N 0.551 4.449 18 O -0.405 6.405 19 O -0.365 6.365 20 C -0.024 4.024 21 C -0.143 4.143 22 C 0.162 3.838 23 O -0.312 6.312 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.047 0.953 28 H 0.025 0.975 29 H 0.078 0.922 30 H 0.178 0.822 31 H 0.212 0.788 32 H 0.218 0.782 33 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -7.393 -17.981 -1.939 19.538 hybrid contribution 0.550 0.786 0.026 0.960 sum -6.843 -17.195 -1.913 18.606 Atomic orbital electron populations 1.22233 0.78339 1.03659 1.03361 1.48081 1.08225 1.06480 1.69899 1.18869 0.91325 0.79472 0.96518 1.21592 1.37393 1.06864 0.92705 0.93002 1.25825 0.94704 0.96214 1.02030 1.70034 1.38573 1.14779 1.33110 0.85468 0.78808 0.77501 0.79059 1.18737 1.20163 1.20070 1.18300 0.86872 0.84001 0.76963 1.90734 1.15202 1.87625 1.51960 1.20274 0.99758 0.97012 0.99957 1.20928 0.90207 0.94786 0.97068 1.20978 0.95681 0.99770 0.98865 1.43668 1.00996 0.99829 1.00367 1.94593 1.71731 1.44711 1.29496 1.94499 1.52275 1.12925 1.76841 1.21437 0.93714 0.98800 0.88454 1.21741 0.95583 0.95897 1.01043 1.19049 0.89546 0.90478 0.84728 1.84639 1.19578 1.83851 1.43136 0.90115 0.92006 0.89085 0.95298 0.97455 0.92220 0.82173 0.78751 0.78156 0.71103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.11 10.03 127.77 1.28 3.39 16 2 N -0.60 -25.63 2.86 -854.94 -2.44 -28.07 16 3 C 0.26 13.88 5.24 85.63 0.45 14.33 16 4 C -0.55 -31.33 9.39 25.60 0.24 -31.09 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.67 5.46 84.65 0.46 1.14 16 7 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 8 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 C 0.55 22.73 6.85 86.70 0.59 23.33 16 13 O -0.57 -28.33 16.27 0.21 0.00 -28.33 16 14 C -0.17 -4.80 5.06 -20.01 -0.10 -4.90 16 15 C -0.01 -0.25 6.84 22.52 0.15 -0.09 16 16 C -0.07 -1.42 6.84 36.34 0.25 -1.17 16 17 N 0.03 0.82 4.45 -46.53 -0.21 0.62 16 18 O -0.20 -5.46 18.43 18.89 0.35 -5.11 16 19 O -0.14 -3.27 18.43 18.88 0.35 -2.92 16 20 C -0.01 -0.07 9.54 22.30 0.21 0.14 16 21 C -0.12 -1.62 9.98 22.34 0.22 -1.40 16 22 C 0.21 4.78 6.70 22.84 0.15 4.93 16 23 O -0.50 -12.45 12.67 -85.46 -1.08 -13.54 16 24 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.09 2.38 3.91 -2.39 -0.01 2.37 16 27 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 28 H 0.01 0.45 7.36 -2.39 -0.02 0.43 16 29 H 0.27 15.06 8.31 -92.71 -0.77 14.28 16 30 H 0.16 3.93 6.63 -2.91 -0.02 3.91 16 31 H 0.20 1.33 7.59 -2.91 -0.02 1.31 16 32 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 33 H 0.43 7.60 9.06 -74.06 -0.67 6.92 16 Total: -1.00 -76.08 302.28 3.70 -72.38 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 0.51 Total: 5.01 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 3.92 Total: 8.61 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.36 Total: -82.45 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.38 Total: -49.90 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -76.08 3.70 -72.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179452311.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.851 kcal (2) G-P(sol) polarization free energy of solvation -76.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds