Wall clock time and date at job start Tue Mar 31 2020 01:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46875 * 2 1 4 4 C 1.50696 * 109.47249 * 120.00047 * 2 1 3 5 5 C 1.38164 * 120.02570 * 299.98129 * 4 2 1 6 6 C 1.38246 * 120.05560 * 180.02562 * 5 4 2 7 7 C 1.38291 * 120.11302 * 0.02562 * 6 5 4 8 8 C 1.38122 * 120.05145 * 359.97438 * 7 6 5 9 9 C 1.38708 * 120.02801 * 119.99754 * 4 2 1 10 10 O 1.35923 * 120.05680 * 359.96204 * 9 4 2 11 11 C 1.34263 * 116.99999 * 82.75649 * 10 9 4 12 12 O 1.20821 * 120.00106 * 5.68057 * 11 10 9 13 13 C 1.50701 * 119.99756 * 185.68719 * 11 10 9 14 14 S 1.80996 * 109.47268 * 179.97438 * 13 11 10 15 15 C 1.76197 * 100.00175 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99959 * 0.02562 * 15 14 13 17 17 C 1.38802 * 120.00003 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00028 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99926 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47061 * 90.00171 * 19 17 15 21 21 H 1.48506 * 109.47320 * 210.00261 * 19 17 15 22 22 H 1.48506 * 109.47374 * 330.00391 * 19 17 15 23 23 H 1.08998 * 109.47269 * 60.00419 * 1 2 3 24 24 H 1.09004 * 109.46706 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47123 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47078 * 240.00122 * 2 1 3 27 27 H 1.08995 * 109.46731 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46830 * 299.99850 * 3 2 1 29 29 H 1.08994 * 109.47216 * 60.00093 * 3 2 1 30 30 H 1.07998 * 119.97710 * 0.02562 * 5 4 2 31 31 H 1.08002 * 119.94812 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.97866 * 180.27444 * 7 6 5 33 33 H 1.08007 * 120.02848 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47352 * 299.99807 * 13 11 10 35 35 H 1.09005 * 109.46881 * 59.99893 * 13 11 10 36 36 H 0.96995 * 119.99908 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6993 -0.2386 2.4856 6 6 2.1602 -0.8895 3.6147 7 6 2.9560 -2.0138 3.4913 8 6 3.2918 -2.4893 2.2387 9 6 2.8298 -1.8382 1.1038 10 8 3.1586 -2.3046 -0.1299 11 6 4.1959 -1.7167 -0.7473 12 8 4.8544 -0.8876 -0.1653 13 6 4.5386 -2.0910 -2.1662 14 16 5.9736 -1.1330 -2.7131 15 6 6.1489 -1.7534 -4.3529 16 1 5.4658 -2.5041 -4.7221 17 6 7.1649 -1.2774 -5.1701 18 7 7.9977 -0.3630 -4.7199 19 14 7.3503 -1.9347 -6.9087 20 1 6.5486 -1.1018 -7.8409 21 1 8.7803 -1.8860 -7.3065 22 1 6.8694 -3.3388 -6.9612 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.0783 0.6394 2.5847 31 1 1.8984 -0.5195 4.5950 32 1 3.3113 -2.5232 4.3748 33 1 3.9130 -3.3676 2.1427 34 1 4.7714 -3.1548 -2.2154 35 1 3.6893 -1.8746 -2.8143 36 1 8.7079 -0.0306 -5.2908 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192504222.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:40 Heat of formation + Delta-G solvation = -66.315053 kcal Electronic energy + Delta-G solvation = -19270.352149 eV Core-core repulsion = 16231.747806 eV Total energy + Delta-G solvation = -3038.604342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.20932 -38.83318 -36.43350 -35.44400 -32.51284 -30.77733 -29.98824 -29.05670 -27.13277 -25.59660 -23.69817 -23.29243 -20.92179 -20.06573 -18.11117 -17.79215 -16.74452 -16.45468 -15.87309 -14.87073 -14.82704 -14.61530 -14.15167 -14.09396 -13.81415 -13.63175 -13.07256 -12.76324 -12.60052 -12.45370 -12.17085 -12.06758 -11.79319 -11.29247 -11.13586 -11.12749 -11.09006 -10.85923 -10.71599 -10.42739 -10.17751 -9.94390 -9.14046 -8.90766 -8.65893 -8.39665 -6.64078 -6.29965 -4.03175 1.05853 1.26391 2.53015 2.70387 3.19037 3.22682 3.27145 3.45003 3.77027 4.12266 4.53654 4.66892 4.90113 4.94193 5.04704 5.06104 5.17526 5.24826 5.32665 5.39791 5.43845 5.60954 5.70444 5.77168 5.83652 5.86035 5.93130 6.00512 6.02461 6.11620 6.28034 6.34022 6.37834 6.49409 6.58099 6.97132 7.52886 8.17824 8.27683 9.15613 10.77528 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.028692 B = 0.004041 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.654191 B = 6926.972869 C = 7312.689732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 C -0.145 4.145 4 C -0.076 4.076 5 C -0.105 4.105 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.117 4.117 9 C 0.092 3.908 10 O -0.300 6.300 11 C 0.475 3.525 12 O -0.466 6.466 13 C -0.128 4.128 14 S -0.055 6.055 15 C -0.537 4.537 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.867 5.867 19 Si 0.921 3.079 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.271 1.271 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.190 -1.363 12.988 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 C -0.202 4.202 4 C -0.076 4.076 5 C -0.123 4.123 6 C -0.137 4.137 7 C -0.131 4.131 8 C -0.135 4.135 9 C 0.051 3.949 10 O -0.217 6.217 11 C 0.316 3.684 12 O -0.349 6.349 13 C -0.275 4.275 14 S 0.172 5.828 15 C -0.685 4.685 16 H 0.095 0.905 17 C -0.134 4.134 18 N -0.502 5.502 19 Si 0.747 3.253 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.195 1.195 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.191 -0.207 13.699 19.019 hybrid contribution -0.498 -1.387 -1.661 2.220 sum -13.689 -1.594 12.038 18.298 Atomic orbital electron populations 1.21818 0.93914 1.01967 1.01916 1.20101 0.96111 0.96529 0.95303 1.21855 1.02331 0.94298 1.01690 1.20084 0.97659 0.93921 0.95955 1.20844 1.00348 0.99935 0.91137 1.21168 0.98059 0.95908 0.98566 1.20975 0.98645 0.96867 0.96640 1.21241 0.99757 1.00884 0.91661 1.18405 0.98036 0.95037 0.83465 1.84636 1.49068 1.59426 1.28587 1.23741 0.76962 0.78848 0.88805 1.90692 1.48546 1.30135 1.65511 1.23334 1.07052 1.06983 0.90169 1.85448 1.29887 1.51966 1.15509 1.22842 1.19096 1.28386 0.98210 0.90536 1.24996 0.94553 0.94675 0.99188 1.70005 1.16214 1.27105 1.36876 0.86123 0.77638 0.79287 0.82216 1.20156 1.20684 1.19550 0.92085 0.92528 0.92542 0.90337 0.91683 0.92065 0.92657 0.85508 0.85711 0.85439 0.85271 0.87718 0.87756 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.01 37.16 0.33 -1.11 16 2 C -0.06 -0.83 2.92 -91.77 -0.27 -1.09 16 3 C -0.14 -1.88 9.01 37.16 0.33 -1.54 16 4 C -0.08 -1.06 4.79 -104.48 -0.50 -1.56 16 5 C -0.10 -1.21 8.71 -39.61 -0.34 -1.56 16 6 C -0.12 -1.25 10.04 -39.56 -0.40 -1.65 16 7 C -0.11 -1.27 10.04 -39.60 -0.40 -1.67 16 8 C -0.12 -1.60 9.99 -39.43 -0.39 -2.00 16 9 C 0.09 1.45 4.92 -39.22 -0.19 1.25 16 10 O -0.30 -5.15 9.12 -23.61 -0.22 -5.36 16 11 C 0.47 9.29 6.97 36.01 0.25 9.54 16 12 O -0.47 -10.40 15.61 -18.74 -0.29 -10.69 16 13 C -0.13 -2.59 6.27 36.01 0.23 -2.37 16 14 S -0.05 -1.44 20.58 -107.50 -2.21 -3.65 16 15 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 16 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 17 C 0.08 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -25.57 13.22 55.49 0.73 -24.84 16 19 Si 0.92 20.99 29.55 -169.99 -5.02 15.96 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.51 7.39 -51.93 -0.38 0.12 16 26 H 0.08 1.19 6.39 -51.93 -0.33 0.86 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.61 7.39 -51.93 -0.38 0.22 16 30 H 0.13 1.18 7.10 -52.49 -0.37 0.81 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.10 1.97 8.14 -51.91 -0.42 1.54 16 35 H 0.10 1.94 8.14 -51.91 -0.42 1.52 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 324.46 15.07 4.89 4.89 Total: -1.00 -31.91 324.46 -8.09 -40.00 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.82 Total: 0.07 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -1.15 Total: -16.38 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.73 Total: -24.84 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.51 Total: -16.06 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.21 Total: -3.65 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.91 -8.09 -40.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192504222.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.312 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds