Wall clock time and date at job start Tue Mar 31 2020 01:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86792 * 120.00454 * 2 1 4 4 H 1.48503 * 109.47031 * 240.00059 * 3 2 1 5 5 H 1.48501 * 109.47405 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47571 * 119.99737 * 3 2 1 7 7 C 1.38956 * 119.99509 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99884 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99904 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00079 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99619 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00357 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47115 * 179.97438 * 12 10 9 14 14 O 1.42904 * 109.47009 * 179.97438 * 13 12 10 15 15 C 1.35898 * 116.99940 * 179.97438 * 14 13 12 16 16 C 1.38747 * 120.05546 * 0.02562 * 15 14 13 17 17 C 1.38125 * 119.94590 * 179.97438 * 16 15 14 18 18 C 1.38289 * 120.05159 * 359.97438 * 17 16 15 19 19 C 1.38243 * 120.11362 * 359.97438 * 18 17 16 20 20 C 1.38163 * 120.05442 * 0.02562 * 19 18 17 21 21 N 1.48007 * 120.02705 * 180.02562 * 20 19 18 22 22 O 1.21798 * 120.00276 * 359.97438 * 21 20 19 23 23 O 1.21799 * 120.00116 * 179.97438 * 21 20 19 24 24 H 0.97007 * 119.99173 * 0.02562 * 1 2 3 25 25 H 0.97004 * 120.00098 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47036 * 59.99865 * 12 10 9 27 27 H 1.08998 * 109.46929 * 300.00327 * 12 10 9 28 28 H 1.08999 * 109.47276 * 60.00016 * 13 12 10 29 29 H 1.08995 * 109.46990 * 300.00058 * 13 12 10 30 30 H 1.08000 * 120.03041 * 359.95195 * 16 15 14 31 31 H 1.07993 * 119.97844 * 179.72247 * 17 16 15 32 32 H 1.08004 * 119.94567 * 179.97438 * 18 17 16 33 33 H 1.08001 * 119.97538 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2834 2.7464 -0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2035 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0016 10 6 1.9969 -3.5579 0.0016 11 8 3.2099 -3.5580 0.0011 12 6 1.2434 -4.8630 0.0022 13 6 2.2376 -6.0260 0.0014 14 8 1.5229 -7.2635 0.0026 15 6 2.2630 -8.4033 0.0015 16 6 3.6487 -8.3321 0.0000 17 6 4.3987 -9.4920 -0.0005 18 6 3.7695 -10.7235 0.0010 19 6 2.3891 -10.7971 0.0036 20 6 1.6344 -9.6398 0.0042 21 7 0.1565 -9.7193 0.0075 22 8 -0.3950 -10.8052 0.0094 23 8 -0.5083 -8.6987 0.0085 24 1 -0.4849 0.8402 -0.0004 25 1 0.3532 -2.3906 0.0016 26 1 0.6164 -4.9209 -0.8875 27 1 0.6170 -4.9204 0.8924 28 1 2.8649 -5.9683 0.8909 29 1 2.8635 -5.9682 -0.8890 30 1 4.1405 -7.3706 -0.0012 31 1 5.4772 -9.4372 -0.0063 32 1 4.3576 -11.6294 0.0002 33 1 1.9000 -11.7600 0.0044 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195453417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:38 Heat of formation + Delta-G solvation = -77.170684 kcal Electronic energy + Delta-G solvation = -20778.149088 eV Core-core repulsion = 17192.780796 eV Total energy + Delta-G solvation = -3585.368292 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.19676 -41.40433 -40.20750 -38.83430 -37.49870 -36.09527 -33.58254 -33.23921 -32.64128 -31.11288 -27.57772 -27.34730 -25.45130 -23.43688 -23.13366 -21.10269 -20.51819 -19.88262 -19.66961 -19.05912 -18.58688 -17.58951 -17.49083 -17.01360 -16.55876 -16.14901 -15.87940 -15.79489 -15.56401 -14.66208 -14.35142 -14.25644 -13.53705 -13.35054 -13.20996 -12.91184 -12.87390 -12.63437 -12.51178 -12.45338 -12.20422 -12.13202 -11.98192 -11.91737 -11.55074 -10.67696 -10.50993 -10.08701 -9.71052 -8.50539 -6.00887 -1.15118 -0.00891 0.33658 0.46423 1.38278 1.41396 1.52108 1.63829 1.94810 2.29644 2.30414 3.16494 3.16546 3.36787 3.47399 3.80165 3.81981 3.90298 3.96313 4.04754 4.21295 4.44779 4.52758 4.71531 4.72740 4.76109 4.97068 5.13106 5.24153 5.37657 5.42533 5.91407 5.93853 6.49961 6.57538 7.04624 7.46790 7.98746 8.66393 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.032274 B = 0.003247 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.362546 B = 8621.148748 C = 9468.064477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.340 4.340 8 H 0.086 0.914 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.632 6.632 12 C -0.119 4.119 13 C 0.085 3.915 14 O -0.302 6.302 15 C 0.178 3.822 16 C -0.221 4.221 17 C -0.008 4.008 18 C -0.141 4.141 19 C -0.024 4.024 20 C -0.110 4.110 21 N 0.038 4.962 22 O -0.178 6.178 23 O -0.197 6.197 24 H 0.279 0.721 25 H 0.398 0.602 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.158 0.842 31 H 0.185 0.815 32 H 0.191 0.809 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.894 -20.689 -0.011 22.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.212 4.212 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.104 0.896 9 N -0.200 5.200 10 C 0.232 3.768 11 O -0.521 6.521 12 C -0.159 4.159 13 C 0.010 3.990 14 O -0.213 6.213 15 C 0.128 3.872 16 C -0.240 4.240 17 C -0.026 4.026 18 C -0.160 4.160 19 C -0.043 4.043 20 C -0.196 4.196 21 N 0.549 4.451 22 O -0.392 6.392 23 O -0.405 6.405 24 H 0.089 0.911 25 H 0.232 0.768 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.175 0.825 31 H 0.202 0.798 32 H 0.208 0.792 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 8.964 -20.383 -0.012 22.267 hybrid contribution -0.907 1.202 0.001 1.506 sum 8.057 -19.181 -0.011 20.805 Atomic orbital electron populations 1.69685 1.07041 1.29636 1.49485 1.26135 0.96532 1.02708 0.95861 0.84937 0.77731 0.76255 0.79129 1.19442 1.19649 1.19435 1.19716 0.92953 0.83751 1.50475 0.89647 1.41926 1.09563 1.04739 1.63810 1.20303 0.87857 0.85712 0.82949 1.90487 1.15409 1.88159 1.58001 1.21194 0.98705 0.89717 1.06290 1.22514 0.93953 0.79184 1.03355 1.86292 1.35967 1.13074 1.85982 1.19076 0.91771 0.84933 0.91372 1.21746 0.89980 1.03246 1.09028 1.21981 1.02974 0.90373 0.87301 1.21646 0.91832 1.00434 1.02067 1.21343 0.95120 0.96307 0.91541 1.20915 0.78169 0.95451 1.25022 1.43754 1.04431 1.00030 0.96922 1.94437 1.74297 1.16399 1.54039 1.94628 1.65253 1.25296 1.55286 0.91116 0.76793 0.87643 0.87639 0.90396 0.90380 0.82467 0.79778 0.79181 0.80862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.40 13.05 21.67 0.28 -49.12 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 1.00 41.96 29.55 68.60 2.03 43.99 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.34 -18.89 9.68 84.04 0.81 -18.08 16 8 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 9 N -0.57 -28.67 5.29 -306.98 -1.62 -30.29 16 10 C 0.44 20.44 7.78 87.66 0.68 21.12 16 11 O -0.63 -32.71 15.56 -3.09 -0.05 -32.76 16 12 C -0.12 -4.13 6.07 29.85 0.18 -3.94 16 13 C 0.08 2.59 4.03 71.98 0.29 2.88 16 14 O -0.30 -9.33 8.15 -71.25 -0.58 -9.91 16 15 C 0.18 4.55 6.67 22.50 0.15 4.70 16 16 C -0.22 -4.03 9.04 22.36 0.20 -3.83 16 17 C -0.01 -0.08 10.04 22.25 0.22 0.14 16 18 C -0.14 -1.21 10.04 22.28 0.22 -0.98 16 19 C -0.02 -0.37 9.55 22.25 0.21 -0.16 16 20 C -0.11 -2.75 6.87 36.47 0.25 -2.50 16 21 N 0.04 1.21 4.45 -46.24 -0.21 1.00 16 22 O -0.18 -5.40 18.45 18.89 0.35 -5.05 16 23 O -0.20 -7.24 17.24 25.61 0.44 -6.80 16 24 H 0.28 14.09 8.31 -92.70 -0.77 13.32 16 25 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 26 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 27 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 28 H 0.08 2.32 7.62 -2.39 -0.02 2.30 16 29 H 0.08 2.32 7.62 -2.39 -0.02 2.31 16 30 H 0.16 2.82 6.30 -2.91 -0.02 2.80 16 31 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 32 H 0.19 0.03 8.06 -2.91 -0.02 0.01 16 33 H 0.17 2.00 7.61 -2.91 -0.02 1.98 16 Total: -1.00 -71.95 303.24 4.77 -67.17 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.43 Total: 22.57 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 3.70 Total: -0.82 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -1.55 Total: -78.41 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: 0.16 Total: -54.51 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -71.95 4.77 -67.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195453417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.996 kcal (2) G-P(sol) polarization free energy of solvation -71.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds