Wall clock time and date at job start Tue Mar 31 2020 00:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47316 * 2 1 4 4 C 1.50705 * 109.47141 * 240.00474 * 2 1 3 5 5 H 1.07999 * 119.99880 * 240.00012 * 4 2 1 6 6 C 1.37883 * 119.99657 * 59.99235 * 4 2 1 7 7 N 1.31511 * 120.00183 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99574 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47223 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.46940 * 120.00490 * 8 6 4 11 11 H 1.48503 * 109.46590 * 240.00375 * 8 6 4 12 12 N 1.46496 * 109.47600 * 120.00086 * 2 1 3 13 13 C 1.34767 * 120.00408 * 274.99984 * 12 2 1 14 14 O 1.21706 * 119.99902 * 359.97438 * 13 12 2 15 15 C 1.46388 * 120.00564 * 179.97438 * 13 12 2 16 16 C 1.34842 * 120.00149 * 173.28077 * 15 13 12 17 17 C 1.47162 * 120.00008 * 348.75810 * 16 15 13 18 18 C 1.40322 * 120.56610 * 132.17344 * 17 16 15 19 19 C 1.38195 * 118.28143 * 179.70562 * 18 17 16 20 20 C 1.38592 * 119.32199 * 0.53273 * 19 18 17 21 21 Cl 1.73604 * 119.44471 * 179.72429 * 20 19 18 22 22 N 1.32045 * 121.10708 * 359.45468 * 20 19 18 23 23 C 1.31659 * 121.88322 * 0.27013 * 22 20 19 24 24 H 1.09003 * 109.47316 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47145 * 299.99529 * 1 2 3 26 26 H 1.08997 * 109.47860 * 60.00087 * 1 2 3 27 27 H 0.97002 * 119.99586 * 180.02562 * 7 6 4 28 28 H 0.97002 * 119.99737 * 94.99961 * 12 2 1 29 29 H 1.08003 * 119.99504 * 353.27738 * 15 13 12 30 30 H 1.08006 * 119.99419 * 168.76076 * 16 15 13 31 31 H 1.08000 * 120.86023 * 359.97438 * 18 17 16 32 32 H 1.07997 * 120.34389 * 180.28382 * 19 18 17 33 33 H 1.08000 * 119.72875 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6990 -0.2392 -2.4828 7 7 0.9432 0.8303 -2.6033 8 14 2.3212 -1.1201 -4.0081 9 1 3.1464 -2.2867 -3.6041 10 1 1.1659 -1.5864 -4.8162 11 1 3.1463 -0.1869 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0184 2.3570 14 8 1.8582 1.1626 2.4117 15 6 2.6347 -0.7085 3.5524 16 6 2.8926 -0.0097 4.6764 17 6 2.9247 1.4610 4.6373 18 6 2.2336 2.2156 5.5975 19 6 2.3010 3.5937 5.5199 20 6 3.0326 4.1811 4.4998 21 17 3.1136 5.9121 4.3950 22 7 3.6734 3.4462 3.6093 23 6 3.6447 2.1303 3.6435 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 0.7085 1.1615 -3.4844 28 1 2.2491 -1.6318 1.1525 29 1 2.7878 -1.7775 3.5340 30 1 3.0755 -0.5295 5.6053 31 1 1.6672 1.7319 6.3796 32 1 1.7857 4.2069 6.2443 33 1 4.1814 1.5634 2.8972 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255336185.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:59 Heat of formation + Delta-G solvation = 10.934450 kcal Electronic energy + Delta-G solvation = -18950.327914 eV Core-core repulsion = 15809.489312 eV Total energy + Delta-G solvation = -3140.838602 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20642 -38.80010 -36.54482 -35.09167 -33.86111 -32.42936 -32.16757 -29.98000 -28.61437 -25.28739 -24.40678 -23.52088 -22.24016 -20.19677 -19.24809 -17.58016 -17.03269 -16.57707 -15.95402 -15.38895 -14.80891 -14.48053 -14.26548 -13.79924 -13.68892 -13.43373 -13.19085 -12.67320 -12.41319 -11.94956 -11.73769 -11.50836 -11.22385 -11.09461 -10.98637 -10.78641 -10.32755 -10.26022 -10.04425 -9.66468 -9.53003 -9.11797 -9.05396 -8.57245 -8.11278 -7.91912 -6.13612 -4.23341 0.66229 1.36134 1.76302 1.95188 3.23102 3.30909 3.33292 3.84364 3.85916 4.09326 4.37834 4.55034 4.73417 4.90018 4.99971 5.18865 5.20914 5.30892 5.49982 5.73751 5.84792 6.03723 6.23807 6.33475 6.63557 6.80579 6.93498 7.12639 7.41296 7.53423 7.67431 7.89020 7.93560 8.12855 8.61643 8.75590 9.06708 9.44366 10.92371 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.004312 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.331505 B = 6491.894651 C = 7318.238947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.697 5.697 13 C 0.518 3.482 14 O -0.547 6.547 15 C -0.181 4.181 16 C -0.053 4.053 17 C -0.098 4.098 18 C -0.055 4.055 19 C -0.165 4.165 20 C 0.177 3.823 21 Cl -0.046 7.046 22 N -0.481 5.481 23 C 0.196 3.804 24 H 0.026 0.974 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.264 0.736 28 H 0.389 0.611 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 -0.562 17.067 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.343 5.343 13 C 0.305 3.695 14 O -0.428 6.428 15 C -0.202 4.202 16 C -0.074 4.074 17 C -0.100 4.100 18 C -0.081 4.081 19 C -0.186 4.186 20 C 0.014 3.986 21 Cl -0.017 7.017 22 N -0.192 5.192 23 C 0.037 3.963 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.222 0.778 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.750 0.991 16.225 16.682 hybrid contribution -0.244 -1.269 -0.422 1.359 sum 3.506 -0.278 15.803 16.190 Atomic orbital electron populations 1.22063 0.98426 0.99035 1.00904 1.18771 0.91032 0.94055 0.79966 0.93214 1.21240 1.32526 1.13260 0.90303 0.92013 1.24894 0.94776 0.94919 0.99100 1.69914 1.35815 1.22401 1.23827 0.86395 0.78607 0.79522 0.82583 1.19722 1.20877 1.20835 1.46549 1.63715 1.13594 1.10490 1.18428 0.79885 0.87227 0.84004 1.90834 1.51780 1.15416 1.84778 1.23414 1.01789 1.00759 0.94210 1.22061 0.96252 0.91373 0.97692 1.19925 0.99293 0.94373 0.96403 1.21519 0.96355 0.92704 0.97510 1.21549 1.01836 0.95460 0.99793 1.21622 0.96641 0.86922 0.93389 1.98381 1.97199 1.08259 1.97877 1.66877 1.20585 1.07557 1.24131 1.22654 0.93033 0.87884 0.92759 0.95528 0.96712 0.89167 0.92591 0.77813 0.84901 0.84511 0.84178 0.84222 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 2 C 0.26 6.62 2.56 -69.08 -0.18 6.45 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.00 11.32 55.43 0.63 -24.37 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.57 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.70 -13.91 5.06 -56.34 -0.29 -14.20 16 13 C 0.52 9.65 6.92 -12.99 -0.09 9.56 16 14 O -0.55 -12.20 12.12 5.18 0.06 -12.14 16 15 C -0.18 -2.32 9.93 -37.51 -0.37 -2.70 16 16 C -0.05 -0.60 9.81 -37.16 -0.36 -0.97 16 17 C -0.10 -1.37 4.36 -104.91 -0.46 -1.83 16 18 C -0.06 -0.68 9.94 -38.81 -0.39 -1.06 16 19 C -0.17 -2.13 9.86 -39.47 -0.39 -2.52 16 20 C 0.18 2.79 7.27 -17.33 -0.13 2.66 16 21 Cl -0.05 -0.64 29.10 -51.86 -1.51 -2.15 16 22 N -0.48 -8.68 10.32 -9.93 -0.10 -8.78 16 23 C 0.20 3.28 7.96 -17.05 -0.14 3.15 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.39 6.62 8.52 -40.82 -0.35 6.27 16 29 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 30 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 31 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.16 2.62 7.44 -52.49 -0.39 2.23 16 LS Contribution 304.86 15.07 4.59 4.59 Total: -1.00 -31.87 304.86 -7.71 -39.58 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.52 Total: 5.10 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.55 Total: -3.20 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.24 Total: -47.36 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.06 Total: -12.14 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.51 Total: -2.15 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.87 -7.71 -39.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255336185.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.510 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds