Wall clock time and date at job start Tue Mar 31 2020 00:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47316 * 2 1 4 4 C 1.50705 * 109.47141 * 240.00474 * 2 1 3 5 5 H 1.07999 * 119.99880 * 240.00012 * 4 2 1 6 6 C 1.37883 * 119.99657 * 59.99235 * 4 2 1 7 7 N 1.31511 * 120.00183 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99574 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47223 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.46940 * 120.00490 * 8 6 4 11 11 H 1.48503 * 109.46590 * 240.00375 * 8 6 4 12 12 N 1.46496 * 109.47600 * 120.00086 * 2 1 3 13 13 C 1.34767 * 120.00408 * 274.99984 * 12 2 1 14 14 O 1.21706 * 119.99902 * 359.97438 * 13 12 2 15 15 C 1.46388 * 120.00564 * 179.97438 * 13 12 2 16 16 C 1.34842 * 120.00149 * 173.28077 * 15 13 12 17 17 C 1.47162 * 120.00008 * 348.75810 * 16 15 13 18 18 C 1.40322 * 120.56610 * 132.17344 * 17 16 15 19 19 C 1.38195 * 118.28143 * 179.70562 * 18 17 16 20 20 C 1.38592 * 119.32199 * 0.53273 * 19 18 17 21 21 Cl 1.73604 * 119.44471 * 179.72429 * 20 19 18 22 22 N 1.32045 * 121.10708 * 359.45468 * 20 19 18 23 23 C 1.31659 * 121.88322 * 0.27013 * 22 20 19 24 24 H 1.09003 * 109.47316 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47145 * 299.99529 * 1 2 3 26 26 H 1.08997 * 109.47860 * 60.00087 * 1 2 3 27 27 H 0.97002 * 119.99586 * 180.02562 * 7 6 4 28 28 H 0.97002 * 119.99737 * 94.99961 * 12 2 1 29 29 H 1.08003 * 119.99504 * 353.27738 * 15 13 12 30 30 H 1.08006 * 119.99419 * 168.76076 * 16 15 13 31 31 H 1.08000 * 120.86023 * 359.97438 * 18 17 16 32 32 H 1.07997 * 120.34389 * 180.28382 * 19 18 17 33 33 H 1.08000 * 119.72875 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6990 -0.2392 -2.4828 7 7 0.9432 0.8303 -2.6033 8 14 2.3212 -1.1201 -4.0081 9 1 3.1464 -2.2867 -3.6041 10 1 1.1659 -1.5864 -4.8162 11 1 3.1463 -0.1869 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0184 2.3570 14 8 1.8582 1.1626 2.4117 15 6 2.6347 -0.7085 3.5524 16 6 2.8926 -0.0097 4.6764 17 6 2.9247 1.4610 4.6373 18 6 2.2336 2.2156 5.5975 19 6 2.3010 3.5937 5.5199 20 6 3.0326 4.1811 4.4998 21 17 3.1136 5.9121 4.3950 22 7 3.6734 3.4462 3.6093 23 6 3.6447 2.1303 3.6435 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 0.7085 1.1615 -3.4844 28 1 2.2491 -1.6318 1.1525 29 1 2.7878 -1.7775 3.5340 30 1 3.0755 -0.5295 5.6053 31 1 1.6672 1.7319 6.3796 32 1 1.7857 4.2069 6.2443 33 1 4.1814 1.5634 2.8972 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255336185.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:59 Heat of formation + Delta-G solvation = -11.024582 kcal Electronic energy + Delta-G solvation = -18951.280129 eV Core-core repulsion = 15809.489312 eV Total energy + Delta-G solvation = -3141.790817 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.38186 -40.23564 -37.67325 -36.81950 -35.06914 -34.30807 -33.25239 -31.44272 -30.15069 -27.36112 -25.63444 -24.63940 -23.64697 -21.86704 -20.68952 -18.89255 -18.32349 -17.87370 -17.47989 -17.14044 -16.26264 -15.84725 -15.61173 -15.17679 -14.98512 -14.65927 -14.38210 -14.21343 -13.95684 -13.67471 -13.04869 -12.92572 -12.89133 -12.71857 -12.57891 -12.34668 -12.29260 -12.11798 -11.15367 -11.09732 -10.89732 -10.71716 -10.60611 -10.36239 -9.64620 -9.25166 -8.18792 -6.36501 -0.41316 0.30598 0.69926 0.84180 1.43103 1.44238 1.56277 2.36066 2.50034 2.73209 2.76772 3.12301 3.50586 3.70731 3.93493 3.99886 4.14921 4.23502 4.57091 4.73062 4.73728 4.85045 4.89658 5.01731 5.08760 5.25254 5.35228 5.47355 5.60023 5.62674 5.70691 5.93304 6.09712 6.73036 6.78740 7.03375 7.32445 7.62295 8.87697 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.004312 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.331505 B = 6491.894651 C = 7318.238947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.273 3.727 3 H -0.007 1.007 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.257 1.257 10 H -0.278 1.278 11 H -0.286 1.286 12 N -0.699 5.699 13 C 0.511 3.489 14 O -0.591 6.591 15 C -0.193 4.193 16 C -0.022 4.022 17 C -0.108 4.108 18 C -0.048 4.048 19 C -0.159 4.159 20 C 0.149 3.851 21 Cl -0.045 7.045 22 N -0.524 5.524 23 C 0.168 3.832 24 H 0.041 0.959 25 H 0.009 0.991 26 H 0.062 0.938 27 H 0.264 0.736 28 H 0.406 0.594 29 H 0.176 0.824 30 H 0.195 0.805 31 H 0.188 0.812 32 H 0.173 0.827 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -3.076 19.400 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.169 3.831 3 H 0.011 0.989 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.797 3.203 9 H -0.180 1.180 10 H -0.204 1.204 11 H -0.212 1.212 12 N -0.347 5.347 13 C 0.301 3.699 14 O -0.475 6.475 15 C -0.214 4.214 16 C -0.041 4.041 17 C -0.110 4.110 18 C -0.073 4.073 19 C -0.179 4.179 20 C -0.013 4.013 21 Cl -0.016 7.016 22 N -0.236 5.236 23 C 0.009 3.991 24 H 0.060 0.940 25 H 0.028 0.972 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.241 0.759 29 H 0.194 0.806 30 H 0.212 0.788 31 H 0.205 0.795 32 H 0.190 0.810 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.856 -1.561 18.590 19.049 hybrid contribution -0.261 -0.368 -1.050 1.143 sum 3.595 -1.929 17.540 18.008 Atomic orbital electron populations 1.21863 0.98493 0.99331 0.99254 1.18254 0.90913 0.91702 0.82245 0.98894 1.21604 1.32397 1.13497 0.90804 0.90669 1.25834 0.94887 0.95554 1.02489 1.70076 1.37212 1.24088 1.24476 0.85291 0.78101 0.78549 0.78363 1.18044 1.20400 1.21218 1.46256 1.64472 1.14284 1.09694 1.19425 0.78658 0.86831 0.85009 1.90825 1.53414 1.17598 1.85615 1.23345 1.03973 1.02543 0.91513 1.22606 0.92749 0.89651 0.99130 1.20293 0.98620 0.96342 0.95752 1.22088 0.95271 0.92323 0.97588 1.21992 1.00403 0.96465 0.99050 1.21993 0.97821 0.87145 0.94344 1.98367 1.97268 1.08047 1.97939 1.66704 1.22354 1.08650 1.25877 1.22564 0.94824 0.87814 0.93883 0.94006 0.97169 0.91923 0.92667 0.75892 0.80627 0.78779 0.79513 0.80965 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.70 9.26 71.98 0.67 -6.04 16 2 C 0.27 14.19 2.56 44.25 0.11 14.30 16 3 H -0.01 -0.43 7.58 -2.39 -0.02 -0.45 16 4 C -0.54 -28.91 8.73 25.60 0.22 -28.68 16 5 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -53.95 11.32 21.45 0.24 -53.71 16 8 Si 0.97 42.37 29.54 68.60 2.03 44.39 16 9 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.70 -27.94 5.06 -450.38 -2.28 -30.22 16 13 C 0.51 18.90 6.92 86.37 0.60 19.50 16 14 O -0.59 -27.18 12.12 -4.37 -0.05 -27.24 16 15 C -0.19 -4.35 9.93 23.61 0.23 -4.11 16 16 C -0.02 -0.39 9.81 23.84 0.23 -0.16 16 17 C -0.11 -2.80 4.36 -20.05 -0.09 -2.89 16 18 C -0.05 -1.00 9.94 22.77 0.23 -0.77 16 19 C -0.16 -3.77 9.86 22.34 0.22 -3.55 16 20 C 0.15 4.73 7.27 84.75 0.62 5.35 16 21 Cl -0.04 -1.28 29.10 -2.72 -0.08 -1.36 16 22 N -0.52 -19.79 10.32 -185.34 -1.91 -21.70 16 23 C 0.17 5.79 7.96 85.09 0.68 6.46 16 24 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.06 3.56 6.07 -2.39 -0.01 3.54 16 27 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.41 13.28 8.52 -92.71 -0.79 12.49 16 29 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.19 2.13 8.06 -2.91 -0.02 2.10 16 32 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.14 4.95 7.44 -2.91 -0.02 4.93 16 Total: -1.00 -75.33 304.86 2.47 -72.86 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.35 Total: 16.43 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 4.17 Total: 0.53 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -3.95 Total: -105.62 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.05 Total: -27.24 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -75.33 2.47 -72.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255336185.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.835 kcal (2) G-P(sol) polarization free energy of solvation -75.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds