Wall clock time and date at job start Tue Mar 31 2020 00:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47365 * 2 1 4 4 C 1.50707 * 109.46888 * 119.99265 * 2 1 3 5 5 H 1.07999 * 119.99813 * 119.99822 * 4 2 1 6 6 C 1.37876 * 119.99932 * 300.00209 * 4 2 1 7 7 N 1.31509 * 120.00513 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99389 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46918 * 90.00245 * 8 6 4 10 10 H 1.48497 * 109.46802 * 209.99545 * 8 6 4 11 11 H 1.48497 * 109.47400 * 329.99650 * 8 6 4 12 12 N 1.46494 * 109.46991 * 239.99412 * 2 1 3 13 13 C 1.34775 * 120.00166 * 85.00250 * 12 2 1 14 14 O 1.21670 * 119.99691 * 359.97438 * 13 12 2 15 15 C 1.46652 * 119.99920 * 179.97438 * 13 12 2 16 16 C 1.34635 * 119.99578 * 186.73417 * 15 13 12 17 17 C 1.47407 * 120.00255 * 11.47384 * 16 15 13 18 18 C 1.40180 * 120.94354 * 46.08802 * 17 16 15 19 19 C 1.37938 * 119.00147 * 179.97438 * 18 17 16 20 20 N 1.31915 * 120.94912 * 0.02562 * 19 18 17 21 21 C 1.31959 * 122.09248 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 119.55585 * 180.02562 * 21 20 19 23 23 C 1.38203 * 120.88641 * 359.73218 * 21 20 19 24 24 H 1.08997 * 109.47439 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46906 * 59.99977 * 1 2 3 26 26 H 1.09008 * 109.46802 * 300.00789 * 1 2 3 27 27 H 0.96999 * 120.00346 * 180.02562 * 7 6 4 28 28 H 0.96997 * 119.99963 * 265.00182 * 12 2 1 29 29 H 1.07996 * 120.00525 * 6.73430 * 15 13 12 30 30 H 1.08006 * 119.99911 * 191.47729 * 16 15 13 31 31 H 1.08002 * 120.49928 * 359.95692 * 18 17 16 32 32 H 1.08004 * 119.52874 * 179.97438 * 19 18 17 33 33 H 1.08002 * 120.52328 * 180.26529 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1200 4.0081 9 1 3.6295 -0.5455 4.4125 10 1 1.3430 -0.9488 5.1121 11 1 2.4857 -2.5659 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0185 -2.3571 14 8 1.8573 1.1619 -2.4119 15 6 2.6364 -0.7099 -3.5543 16 6 2.8941 -0.0121 -4.6765 17 6 2.9306 1.4610 -4.6364 18 6 3.6233 2.1375 -3.6227 19 6 3.6317 3.5169 -3.6242 20 7 3.0000 4.1981 -4.5607 21 6 2.3350 3.6029 -5.5327 22 17 1.5277 4.5644 -6.7317 23 6 2.2775 2.2244 -5.6123 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5140 0.8900 27 1 0.7094 1.1621 3.4843 28 1 2.2490 -1.6318 -1.1524 29 1 2.7901 -1.7787 -3.5358 30 1 3.0740 -0.5316 -5.6061 31 1 4.1424 1.5871 -2.8520 32 1 4.1624 4.0468 -2.8470 33 1 1.7350 1.7433 -6.4128 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255677236.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:09 Heat of formation + Delta-G solvation = -7.677920 kcal Electronic energy + Delta-G solvation = -18925.098369 eV Core-core repulsion = 15783.452674 eV Total energy + Delta-G solvation = -3141.645695 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.38755 -40.27144 -37.65516 -36.87986 -35.33950 -34.30678 -32.19237 -31.88013 -30.55076 -27.34779 -25.79978 -24.52052 -23.68550 -21.86240 -20.72179 -19.09107 -18.04369 -17.55994 -17.28513 -16.93418 -16.78161 -15.88883 -15.65035 -15.40926 -15.12632 -14.76941 -14.46910 -14.36422 -13.69578 -13.39738 -12.99031 -12.90849 -12.89169 -12.75751 -12.67420 -12.33570 -12.26793 -12.12805 -11.47488 -11.09897 -10.76830 -10.63253 -10.56323 -10.08440 -9.67157 -9.50843 -8.17506 -6.35059 -0.34934 0.05405 0.74865 0.86159 1.45327 1.45608 1.56201 2.36690 2.47110 2.72476 2.74409 3.13582 3.43503 3.67165 3.98047 4.03912 4.06166 4.24993 4.59364 4.62897 4.73308 4.77284 4.90939 4.98626 5.10230 5.17903 5.38580 5.49984 5.54473 5.62674 5.71073 5.93210 6.10490 6.73906 6.74501 7.02383 7.33594 7.60658 8.88491 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.003838 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.087519 B = 7294.394952 C = 7630.324029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.273 3.727 3 H 0.000 1.000 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.970 3.030 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.258 1.258 12 N -0.698 5.698 13 C 0.511 3.489 14 O -0.586 6.586 15 C -0.179 4.179 16 C -0.037 4.037 17 C -0.006 4.006 18 C -0.101 4.101 19 C 0.092 3.908 20 N -0.506 5.506 21 C 0.149 3.851 22 Cl -0.036 7.036 23 C -0.141 4.141 24 H 0.039 0.961 25 H 0.009 0.991 26 H 0.063 0.937 27 H 0.264 0.736 28 H 0.406 0.594 29 H 0.179 0.821 30 H 0.194 0.806 31 H 0.130 0.870 32 H 0.171 0.829 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.420 -4.351 -16.726 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.169 3.831 3 H 0.018 0.982 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.795 3.205 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.182 1.182 12 N -0.346 5.346 13 C 0.300 3.700 14 O -0.469 6.469 15 C -0.200 4.200 16 C -0.056 4.056 17 C -0.015 4.015 18 C -0.121 4.121 19 C -0.063 4.063 20 N -0.218 5.218 21 C -0.016 4.016 22 Cl -0.007 7.007 23 C -0.162 4.162 24 H 0.058 0.942 25 H 0.028 0.972 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.241 0.759 29 H 0.196 0.804 30 H 0.211 0.789 31 H 0.148 0.852 32 H 0.188 0.812 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.077 -2.429 -16.652 17.577 hybrid contribution -0.095 -0.924 1.256 1.562 sum 4.982 -3.353 -15.396 16.526 Atomic orbital electron populations 1.21886 0.98694 0.99267 0.99282 1.18272 0.90764 0.91969 0.82082 0.98234 1.21566 1.32458 1.13565 0.90794 0.90705 1.25787 0.94858 0.95556 1.02354 1.70056 1.37063 1.24031 1.24530 0.85375 0.77731 0.79302 0.78120 1.20360 1.21240 1.18227 1.46268 1.64330 1.14301 1.09676 1.19408 0.78816 0.86873 0.84904 1.90830 1.53099 1.17456 1.85533 1.23395 1.02605 1.02636 0.91317 1.22632 0.94054 0.89533 0.99385 1.19567 0.93975 0.95407 0.92503 1.22262 0.98077 0.95474 0.96316 1.22631 0.96395 0.91807 0.95444 1.66770 1.08995 1.42778 1.03270 1.21647 0.97723 0.89425 0.92784 1.98370 1.76739 1.73298 1.52339 1.22099 1.01392 0.91462 1.01228 0.94186 0.97203 0.91853 0.92664 0.75898 0.80381 0.78912 0.85234 0.81229 0.81086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.63 9.26 71.98 0.67 -5.96 16 2 C 0.27 13.63 2.56 44.25 0.11 13.74 16 3 H 0.00 -0.01 7.58 -2.39 -0.02 -0.03 16 4 C -0.55 -27.95 8.73 25.60 0.22 -27.73 16 5 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.26 11.32 21.45 0.24 -52.02 16 8 Si 0.97 41.13 29.54 68.60 2.03 43.16 16 9 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 10 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 12 N -0.70 -26.59 5.06 -450.13 -2.28 -28.87 16 13 C 0.51 18.01 6.89 86.44 0.60 18.60 16 14 O -0.59 -25.63 12.03 -4.25 -0.05 -25.68 16 15 C -0.18 -3.87 9.95 23.64 0.24 -3.64 16 16 C -0.04 -0.68 9.85 23.86 0.24 -0.45 16 17 C -0.01 -0.16 4.43 -19.95 -0.09 -0.25 16 18 C -0.10 -3.09 6.82 22.67 0.15 -2.93 16 19 C 0.09 2.93 11.17 84.61 0.94 3.87 16 20 N -0.51 -16.96 10.31 -186.98 -1.93 -18.89 16 21 C 0.15 4.43 7.27 84.67 0.62 5.04 16 22 Cl -0.04 -0.91 29.10 -2.72 -0.08 -0.99 16 23 C -0.14 -3.57 9.67 22.70 0.22 -3.35 16 24 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 26 H 0.06 3.51 6.07 -2.38 -0.01 3.50 16 27 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 28 H 0.41 12.63 8.52 -92.71 -0.79 11.84 16 29 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 31 H 0.13 3.98 7.37 -2.91 -0.02 3.96 16 32 H 0.17 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -69.49 304.70 2.65 -66.84 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.35 Total: 18.27 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 4.36 Total: -1.83 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -3.97 Total: -99.78 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -69.49 2.65 -66.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255677236.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.166 kcal (2) G-P(sol) polarization free energy of solvation -69.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds