Wall clock time and date at job start Tue Mar 31 2020 01:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.20761 * 120.00231 * 2 1 4 4 C 1.50703 * 120.00124 * 179.97438 * 2 1 3 5 5 H 1.08995 * 109.47081 * 325.00441 * 4 2 1 6 6 C 1.53001 * 109.46811 * 85.00188 * 4 2 1 7 7 S 1.81404 * 109.47392 * 205.00022 * 4 2 1 8 8 C 1.81394 * 102.99961 * 175.00391 * 7 4 2 9 9 C 1.50701 * 109.47067 * 180.02562 * 8 7 4 10 10 C 1.38302 * 119.93101 * 89.99525 * 9 8 7 11 11 C 1.38106 * 120.07107 * 180.02562 * 10 9 8 12 12 C 1.38879 * 119.92571 * 359.97438 * 11 10 9 13 13 O 1.35753 * 120.06541 * 180.02562 * 12 11 10 14 14 C 1.34831 * 117.00188 * 354.46649 * 13 12 11 15 15 H 1.08005 * 119.99910 * 5.05947 * 14 13 12 16 16 C 1.38653 * 120.00325 * 185.05796 * 14 13 12 17 17 N 1.31556 * 119.99986 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99759 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47054 * 90.00219 * 18 16 14 20 20 H 1.48502 * 109.47026 * 209.99915 * 18 16 14 21 21 H 1.48498 * 109.47177 * 330.00281 * 18 16 14 22 22 C 1.38871 * 119.86478 * 0.27488 * 12 11 10 23 23 C 1.38102 * 119.92968 * 359.49233 * 22 12 11 24 24 H 1.09006 * 109.47080 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47604 * 299.99568 * 1 2 3 26 26 H 1.09001 * 109.47211 * 59.99900 * 1 2 3 27 27 H 1.09003 * 109.47315 * 179.97438 * 6 4 2 28 28 H 1.08998 * 109.47280 * 299.99825 * 6 4 2 29 29 H 1.09002 * 109.47463 * 60.00298 * 6 4 2 30 30 H 1.09000 * 109.47198 * 60.00010 * 8 7 4 31 31 H 1.09000 * 109.47008 * 299.99602 * 8 7 4 32 32 H 1.08001 * 119.96675 * 0.02562 * 10 9 8 33 33 H 1.07996 * 120.03520 * 179.97438 * 11 10 9 34 34 H 0.97002 * 119.99567 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.03616 * 179.72161 * 22 12 11 36 36 H 1.08003 * 119.96565 * 180.22670 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 1 1.7131 -2.0404 0.5903 6 6 2.4066 -1.8102 -1.4362 7 16 3.9052 -1.0535 0.7233 8 6 4.5881 -2.7331 0.7780 9 6 5.9756 -2.6923 1.3648 10 6 6.1516 -2.8245 2.7302 11 6 7.4218 -2.7870 3.2710 12 6 8.5230 -2.6168 2.4422 13 8 9.7729 -2.5801 2.9707 14 6 9.8697 -2.5992 4.3154 15 1 8.9827 -2.7243 4.9189 16 6 11.1077 -2.4583 4.9235 17 7 11.2021 -2.4775 6.2356 18 14 12.6418 -2.2426 3.8797 19 1 12.8746 -0.7965 3.6349 20 1 13.8104 -2.8185 4.5925 21 1 12.4598 -2.9414 2.5821 22 6 8.3426 -2.4791 1.0721 23 6 7.0703 -2.5223 0.5369 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 2.9520 -2.7539 -1.4360 28 1 1.4183 -1.9614 -1.8705 29 1 2.9540 -1.0749 -2.0260 30 1 4.6322 -3.1405 -0.2320 31 1 3.9507 -3.3644 1.3970 32 1 5.2948 -2.9572 3.3742 33 1 7.5585 -2.8899 4.3374 34 1 12.0684 -2.3792 6.6609 35 1 9.1967 -2.3421 0.4255 36 1 6.9296 -2.4189 -0.5289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267691698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:10 Heat of formation + Delta-G solvation = -45.700379 kcal Electronic energy + Delta-G solvation = -18357.505361 eV Core-core repulsion = 15319.794939 eV Total energy + Delta-G solvation = -3037.710423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.66971 -39.23837 -36.91669 -33.76364 -32.54418 -31.36622 -30.30461 -30.05177 -26.53522 -24.79618 -24.74183 -22.14805 -20.77434 -19.86624 -17.94588 -17.38348 -16.77706 -16.34161 -15.44172 -15.02459 -14.98522 -14.79505 -14.26630 -14.07637 -13.79656 -13.66835 -13.26669 -13.23045 -12.81679 -12.71000 -12.42859 -12.32888 -12.24527 -12.14190 -11.91242 -11.25503 -11.00864 -10.74875 -10.71303 -10.19173 -9.94382 -9.79440 -9.43471 -8.89109 -8.32196 -7.60662 -7.34794 -6.45965 -4.12070 1.23114 1.70185 2.09594 2.24599 2.74105 3.20439 3.24649 3.38327 3.66180 4.20678 4.47279 4.51529 4.61621 4.78308 4.79451 4.97458 5.02827 5.05512 5.07195 5.11012 5.18786 5.32600 5.54559 5.56758 5.62640 5.70355 5.74373 6.08496 6.26371 6.50014 6.73055 6.96673 7.15459 7.17468 7.23613 7.54444 7.75340 7.98701 8.88807 9.49965 10.61332 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.038818 B = 0.003092 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.144221 B = 9054.833272 C = 9224.741146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.372 3.628 3 O -0.434 6.434 4 C -0.133 4.133 5 H 0.108 0.892 6 C -0.139 4.139 7 S -0.213 6.213 8 C -0.027 4.027 9 C -0.172 4.172 10 C -0.051 4.051 11 C -0.222 4.222 12 C 0.166 3.834 13 O -0.213 6.213 14 C -0.390 4.390 15 H 0.108 0.892 16 C 0.064 3.936 17 N -0.876 5.876 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.193 4.193 23 C -0.054 4.054 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.135 0.865 34 H 0.280 0.720 35 H 0.119 0.881 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.311 -1.009 -13.289 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.245 3.755 3 O -0.305 6.305 4 C -0.262 4.262 5 H 0.126 0.874 6 C -0.197 4.197 7 S 0.019 5.981 8 C -0.174 4.174 9 C -0.175 4.175 10 C -0.071 4.071 11 C -0.241 4.241 12 C 0.113 3.887 13 O -0.117 6.117 14 C -0.466 4.466 15 H 0.125 0.875 16 C -0.140 4.140 17 N -0.514 5.514 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.212 4.212 23 C -0.074 4.074 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.153 0.847 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.177 0.544 -12.868 22.277 hybrid contribution -0.023 -1.204 -0.440 1.282 sum -18.200 -0.660 -13.308 22.556 Atomic orbital electron populations 1.22218 0.93290 1.04758 1.05079 1.24061 0.91780 0.88780 0.70912 1.90471 1.71611 1.34341 1.34087 1.23957 0.99238 1.01257 1.01763 0.87361 1.21920 1.02744 1.02364 0.92703 1.87906 1.13742 1.14812 1.81683 1.22168 0.97220 0.94741 1.03307 1.18620 0.91749 1.13253 0.93882 1.20648 0.96401 0.96489 0.93565 1.21256 0.91943 1.09794 1.01134 1.19163 0.84824 0.92468 0.92247 1.83571 1.23459 1.80155 1.24527 1.20798 0.97279 1.51271 0.77227 0.87501 1.24484 0.98478 0.95544 0.95453 1.69646 1.26502 1.47256 1.07967 0.86174 0.80741 0.79226 0.80742 1.19776 1.20715 1.18308 1.20186 0.97234 1.11176 0.92644 1.20482 0.91294 0.97250 0.98406 0.89946 0.88589 0.88775 0.91114 0.91490 0.90909 0.90077 0.90212 0.87054 0.84725 0.90941 0.86284 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.08 10.33 36.00 0.37 -0.71 16 2 C 0.37 3.73 6.39 -29.04 -0.19 3.54 16 3 O -0.43 -6.32 16.88 6.00 0.10 -6.22 16 4 C -0.13 -1.25 3.03 -27.88 -0.08 -1.33 16 5 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.14 -1.04 9.08 37.16 0.34 -0.70 16 7 S -0.21 -3.00 20.44 -107.50 -2.20 -5.19 16 8 C -0.03 -0.35 5.76 36.01 0.21 -0.14 16 9 C -0.17 -2.84 5.14 -104.58 -0.54 -3.38 16 10 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 11 C -0.22 -4.77 9.17 -39.39 -0.36 -5.13 16 12 C 0.17 3.83 6.65 -39.11 -0.26 3.57 16 13 O -0.21 -5.59 8.59 0.04 0.00 -5.59 16 14 C -0.39 -10.95 9.95 30.89 0.31 -10.64 16 15 H 0.11 3.06 5.44 -52.48 -0.29 2.77 16 16 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 17 N -0.88 -25.22 13.96 55.48 0.77 -24.44 16 18 Si 0.91 21.59 28.62 -169.99 -4.86 16.72 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.19 -3.82 9.99 -39.40 -0.39 -4.21 16 23 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 24 H 0.08 0.27 8.00 -51.93 -0.42 -0.15 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.50 6.92 -51.93 -0.36 0.14 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.89 7.09 -51.92 -0.37 0.52 16 31 H 0.08 0.90 8.08 -51.92 -0.42 0.48 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.14 3.03 5.64 -52.49 -0.30 2.73 16 34 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 324.52 15.07 4.89 4.89 Total: -1.00 -31.80 324.52 -7.42 -39.22 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.66 Total: 0.66 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.46 Total: -20.05 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.77 Total: -24.44 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.10 Total: -11.81 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.86 Total: 16.72 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.20 Total: -5.19 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.80 -7.42 -39.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267691698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.481 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds